FvH4_1g20040

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002915
Physical Location & Seq
Reverse (-)
12163757 .. 12165272
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20040.t1

Sequence Viewer

Length: 786 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACAACGGAGGTGGAGGTGGAGGTGGTGCTCGACTTAAAATGGCAGCCGAAGCGGCTGCGGGTCAGCTACAGCAACAACAGCAGCACCAGCAGACAACGAAGGCCTGCAGGTACAGGGAGTGCTTAAAGAACCATGCCGTGGGGATCGGCGGCCACGCGCTGGACGGCTGCGGCGAGTTTCTGGCCGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGTGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAAGGAGACCGACGAGCCTTACGGTCAGCTGGTGCCGCACCAGAGCCACGTCGGCGGCGGCCATCATAACCACCACGTCCACGGCTTCGGCCACCCGCAATTCTCGCCGAGTGGAGGCTACTACCGCACCCCCGCCGGGTACCTCCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACCTCTGGCGGTGGCGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGCGGCGGAGGAGGGAGTGGATTTGGGATGGGAACGACGTCGTCTAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGAGCGGCTGGGGTGGAGGATTCAGAAGCAGGACGAGGCGGCAGTGCAGAGCTTCTGCGACGAGACCGGTGTGAAGCGTCATGTCCTCAAGTTGGGTTGTCTAAAAGAATGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

262

Amino Acids

28.24

Weight (kDa)

6.27

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 60 - 112 3.7e-28 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 605
Acc36I ACCTGC 2 cut(s) 171, 771
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 358, 465
AccB7I CCANNNNNTGG 2 cut(s) 211, 232
AccBSI CCGCTC 1 cut(s) 673
AccI GTMKAC 1 cut(s) 509
AccII CGCG 4 cut(s) 230, 260, 284, 299
AclWI GGATC 3 cut(s) 21, 224, 540
AcoI YGGCCR 4 cut(s) 223, 255, 385, 415
AcvI CACGTG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 602
AfaI GTAC 2 cut(s) 185, 467
AfiI CCNNNNNNNGG 7 cut(s) 211, 232, 328, 440, 462, 563, 760
AflIII ACRYGT 1 cut(s) 546
AgeI ACCGGT 1 cut(s) 734
AhdI GACNNNNNGTC 1 cut(s) 547
AjiI CACGTC 2 cut(s) 376, 403
AluBI AGCT 4 cut(s) 139, 355, 664, 720
AluI AGCT 4 cut(s) 139, 355, 664, 720
Alw21I GWGCWC 2 cut(s) 27, 103
Alw26I GTCTC 2 cut(s) 326, 725
AlwI GGATC 3 cut(s) 21, 224, 540
AoxI GGCC 6 cut(s) 174, 223, 255, 385, 415, 491
ApeKI GCWGC 6 cut(s) 116, 128, 154, 240, 484, 502
AsiGI ACCGGT 1 cut(s) 734
Asp700I GAANNNNTTC 1 cut(s) 617
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 3 cut(s) 232, 286, 502
AspS9I GGNCC 1 cut(s) 624
AsuC2I CCSGG 1 cut(s) 463
AvaII GGWCC 1 cut(s) 624
BanI GGYRCC 2 cut(s) 358, 465
BbrPI CACGTG 1 cut(s) 475
Bbv12I GWGCWC 2 cut(s) 27, 103
BbvI GCAGC 6 cut(s) 115, 128, 166, 227, 489, 496
BccI CCATC 4 cut(s) 31, 37, 396, 586
BceAI ACGGC 4 cut(s) 194, 253, 424, 490
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 326, 725
BfmI CTRYAG 2 cut(s) 140, 178
BfoI RGCGCY 1 cut(s) 503
BfuAI ACCTGC 2 cut(s) 171, 771
BglI GCCNNNNNGGC 2 cut(s) 125, 378
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 1 cut(s) 624
BmeRI GACNNNNNGTC 1 cut(s) 547
BmgBI CACGTC 2 cut(s) 376, 403
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 4 cut(s) 48, 265, 360, 467
BmrFI CCNGG 1 cut(s) 463
BmsI GCATC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 463
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 602
BsaI GGTCTC 2 cut(s) 326, 725
BsaJI CCNNGG 4 cut(s) 210, 258, 267, 406
BsaWI WCCGGW 1 cut(s) 734
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 232, 328, 440, 462, 563, 760
Bse118I RCCGGY 1 cut(s) 734
BseDI CCNNGG 4 cut(s) 210, 258, 267, 406
BseGI GGATG 2 cut(s) 597, 660
BseLI CCNNNNNNNGG 7 cut(s) 211, 232, 328, 440, 462, 563, 760
BseRI GAGGAG 3 cut(s) 35, 47, 588
BseXI GCAGC 6 cut(s) 115, 128, 166, 227, 489, 496
BseYI CCCAGC 2 cut(s) 557, 676
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 4 cut(s) 230, 260, 284, 299
BshFI GGCC 6 cut(s) 176, 225, 257, 387, 417, 493
BshNI GGYRCC 2 cut(s) 358, 465
BshTI ACCGGT 1 cut(s) 734
BsiHKAI GWGCWC 2 cut(s) 27, 103
BsiSI CCGG 2 cut(s) 462, 735
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 7 cut(s) 211, 232, 328, 440, 462, 563, 760
BsmAI GTCTC 2 cut(s) 326, 725
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 6 cut(s) 176, 225, 257, 387, 417, 493
Bso31I GGTCTC 2 cut(s) 326, 725
Bsp1286I GDGCHC 2 cut(s) 27, 103
Bsp143I GATC 3 cut(s) 13, 216, 532
BspANI GGCC 6 cut(s) 176, 225, 257, 387, 417, 493
BspFNI CGCG 4 cut(s) 230, 260, 284, 299
BspLI GGNNCC 4 cut(s) 48, 265, 360, 467
BspMAI CTGCAG 1 cut(s) 182
BspMI ACCTGC 2 cut(s) 171, 771
BspPI GGATC 3 cut(s) 21, 224, 540
BspT107I GGYRCC 2 cut(s) 358, 465
BspTNI GGTCTC 2 cut(s) 326, 725
BsrBI CCGCTC 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 734
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 4 cut(s) 210, 258, 267, 406
BssMI GATC 3 cut(s) 13, 216, 532
BssNI GRCGYC 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 608
BstACI GRCGYC 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 178, 498, 666
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 3 cut(s) 210, 258, 406
BstF5I GGATG 2 cut(s) 597, 660
BstFNI CGCG 4 cut(s) 230, 260, 284, 299
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 3 cut(s) 232, 286, 502
BstKTI GATC 3 cut(s) 16, 219, 535
BstMAI GTCTC 2 cut(s) 326, 725
BstMBI GATC 3 cut(s) 13, 216, 532
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 461
BstSFI CTRYAG 2 cut(s) 140, 178
BstUI CGCG 4 cut(s) 230, 260, 284, 299
BstV1I GCAGC 6 cut(s) 115, 128, 166, 227, 489, 496
BsuRI GGCC 6 cut(s) 176, 225, 257, 387, 417, 493
BtgI CCRYGG 3 cut(s) 210, 258, 406
BtrI CACGTC 2 cut(s) 376, 403
BtsCI GGATG 2 cut(s) 597, 660
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 1 cut(s) 717
BveI ACCTGC 2 cut(s) 171, 771
Cac8I GCNNGC 3 cut(s) 178, 498, 666
CfoI GCGC 3 cut(s) 232, 286, 502
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 1 cut(s) 624
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 4 cut(s) 283, 290, 490, 734
Csp6I GTAC 2 cut(s) 184, 466
CspAI ACCGGT 1 cut(s) 734
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 3 cut(s) 206, 547, 749
CviQI GTAC 2 cut(s) 184, 466
DdeI CTNAG 1 cut(s) 609
DpnI GATC 3 cut(s) 15, 218, 534
DpnII GATC 3 cut(s) 13, 216, 532
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 4 cut(s) 223, 255, 385, 415
Eam1104I CTCTTC 1 cut(s) 608
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 608
EciI GGCGGA 2 cut(s) 585, 683
Eco147I AGGCCT 1 cut(s) 176
Eco31I GGTCTC 2 cut(s) 326, 725
Eco47I GGWCC 1 cut(s) 624
Eco72I CACGTG 1 cut(s) 475
FaeI CATG 3 cut(s) 209, 550, 752
FaiI YATR 4 cut(s) 207, 393, 548, 750
FaqI GGGAC 1 cut(s) 286
FatI CATG 3 cut(s) 205, 546, 748
FauI CCCGC 4 cut(s) 124, 253, 429, 466
FblI GTMKAC 1 cut(s) 509
FokI GGATG 2 cut(s) 604, 667
GlaI GCGC 3 cut(s) 231, 285, 501
GsaI CCCAGC 2 cut(s) 561, 680
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 6 cut(s) 176, 225, 257, 387, 417, 493
HapII CCGG 2 cut(s) 462, 735
HgaI GACGC 4 cut(s) 283, 290, 490, 734
HhaI GCGC 3 cut(s) 232, 286, 502
Hin1I GRCGYC 1 cut(s) 602
Hin1II CATG 3 cut(s) 209, 550, 752
Hin6I GCGC 3 cut(s) 230, 284, 500
HinP1I GCGC 3 cut(s) 230, 284, 500
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 3 cut(s) 59, 553, 688
HpaII CCGG 2 cut(s) 462, 735
Hpy166II GTNNAC 3 cut(s) 70, 406, 510
Hpy188I TCNGA 1 cut(s) 693
Hpy188III TCNNGA 4 cut(s) 17, 536, 622, 638
Hpy8I GTNNAC 3 cut(s) 70, 406, 510
Hpy99I CGWCG 8 cut(s) 341, 380, 484, 511, 545, 604, 607, 731
HpyAV CCTTC 2 cut(s) 166, 640
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 4 cut(s) 375, 402, 474, 602
HpyCH4V TGCA 3 cut(s) 180, 715, 780
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 4 cut(s) 375, 402, 474, 602
Hsp92I GRCGYC 1 cut(s) 602
Hsp92II CATG 3 cut(s) 209, 550, 752
HspAI GCGC 3 cut(s) 230, 284, 500
KpnI GGTACC 1 cut(s) 469
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 3 cut(s) 13, 216, 532
LmnI GCTCC 6 cut(s) 22, 46, 263, 640, 661, 670
Lsp1109I GCAGC 6 cut(s) 115, 128, 166, 227, 489, 496
LweI GCATC 1 cut(s) 645
MaeII ACGT 4 cut(s) 375, 402, 474, 602
MaeIII GTNAC 3 cut(s) 53, 302, 475
MalI GATC 3 cut(s) 15, 218, 534
MbiI CCGCTC 1 cut(s) 673
MboI GATC 3 cut(s) 13, 216, 532
MboII GAAGA 1 cut(s) 625
MhlI GDGCHC 2 cut(s) 27, 103
MluCI AATT 1 cut(s) 425
MlyI GAGTC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 2 cut(s) 108, 197
MspA1I CMGCKG 4 cut(s) 260, 355, 496, 561
MspI CCGG 2 cut(s) 462, 735
MspR9I CCNGG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 782
MvnI CGCG 4 cut(s) 230, 260, 284, 299
NciI CCSGG 1 cut(s) 463
NdeII GATC 3 cut(s) 13, 216, 532
NlaIII CATG 3 cut(s) 209, 550, 752
NlaIV GGNNCC 4 cut(s) 48, 265, 360, 467
NmeAIII GCCGAG 3 cut(s) 75, 292, 459
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 550
PceI AGGCCT 1 cut(s) 176
PciI ACATGT 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 2 cut(s) 553, 688
PflFI GACNNNGTC 1 cut(s) 604
PflMI CCANNNNNTGG 2 cut(s) 211, 232
PinAI ACCGGT 1 cut(s) 734
PleI GAGTC 1 cut(s) 53
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
PpsI GAGTC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 475
PscI ACATGT 1 cut(s) 546
PspCI CACGTG 1 cut(s) 475
PspFI CCCAGC 2 cut(s) 557, 676
PspN4I GGNNCC 4 cut(s) 48, 265, 360, 467
PspPI GGNCC 1 cut(s) 624
PstI CTGCAG 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 355
RsaI GTAC 2 cut(s) 185, 467
RsaNI GTAC 2 cut(s) 184, 466
SacII CCGCGG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 508
SaqAI TTAA 2 cut(s) 108, 197
Sau3AI GATC 3 cut(s) 13, 216, 532
Sau96I GGNCC 1 cut(s) 624
SbfI CCTGCAGG 1 cut(s) 182
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 463
SdaI CCTGCAGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 27, 103
SfaNI GCATC 1 cut(s) 645
SfcI CTRYAG 2 cut(s) 140, 178
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
Sse8387I CCTGCAGG 1 cut(s) 182
Sse9I AATT 1 cut(s) 425
SseBI AGGCCT 1 cut(s) 176
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 4 cut(s) 378, 405, 477, 605
TaqI TCGA 3 cut(s) 103, 509, 551
TaqII GACCGA 1 cut(s) 350
TasI AATT 1 cut(s) 425
TfiI GAWTC 2 cut(s) 553, 688
Tru1I TTAA 2 cut(s) 108, 197
Tru9I TTAA 2 cut(s) 108, 197
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 6 cut(s) 116, 128, 154, 240, 484, 502
Tsp45I GTSAC 1 cut(s) 475
TspGWI ACGGA 2 cut(s) 93, 545
TspRI CASTG 1 cut(s) 717
Tth111I GACNNNGTC 1 cut(s) 604
Van91I CCANNNNNTGG 2 cut(s) 211, 232
VpaK11BI GGWCC 1 cut(s) 624
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 617
ZraI GACGTC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.