Rroxscaffold_2G00131860

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002915
Physical Location & Seq
Forward (+)
68705865 .. 68706368
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131860.1

Sequence Viewer

Length: 504 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACAACGGAGGAGGTGGAGTAGGTGGTGGCAGAGTCAGAATGGCGAGTTCTGCAGCCGAAGCGGCTGCTGCGGCCGCTTCGGCTGCGGCTCAGCTGCAACAACAACAGCAGCAGACAAGGAGGGCGTGCAGGTATAGGGAGTGCTTGAAGAACCACGCCGTGGGGATTGGAGGGCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCCGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAAGGAGAACGACGAGCCGTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACCACAACCACAACGGGGGTTCGGGCACCCGCAATTCTCGGCGACTGGCGGGTACTACCGCACTCCCGGCGGGTACCTCCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

167

Amino Acids

17.67

Weight (kDa)

6.08

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 67 - 119 3.1e-28 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 192
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 3 cut(s) 379, 443, 491
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 4 cut(s) 251, 281, 305, 320
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 2 cut(s) 144, 276
AcvI CACGTG 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 3 cut(s) 368, 472, 493
AfiI CCNNNNNNNGG 5 cut(s) 232, 280, 349, 389, 433
AgsI TTSAA 1 cut(s) 220
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 273, 387
AluBI AGCT 2 cut(s) 166, 376
AluI AGCT 2 cut(s) 166, 376
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 1 cut(s) 21
AoxI GGCC 3 cut(s) 144, 276, 391
ApeKI GCWGC 6 cut(s) 125, 137, 140, 155, 166, 181
Asp718I GGTACC 1 cut(s) 491
AspLEI GCGC 3 cut(s) 253, 307, 317
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 485
BaeGI GKGCMC 2 cut(s) 249, 446
BanI GGYRCC 3 cut(s) 379, 443, 491
BbrPI CACGTG 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 6 cut(s) 124, 127, 137, 142, 153, 193
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 2 cut(s) 215, 349
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 2 cut(s) 275, 389
BcnI CCSGG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 192
BglI GCCNNNNNGGC 2 cut(s) 134, 152
BlpI GCTNAGC 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 275, 389, 485
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 5 cut(s) 48, 286, 381, 445, 493
BmrFI CCNGG 3 cut(s) 275, 389, 485
Bpu1102I GCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 231, 279, 288, 388
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 280, 349, 389, 433
Bse1I ACTGG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 275, 389
BseDI CCNNGG 4 cut(s) 231, 279, 288, 388
BseLI CCNNNNNNNGG 5 cut(s) 232, 280, 349, 389, 433
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 3 cut(s) 35, 47, 96
BseSI GKGCMC 2 cut(s) 249, 446
BseX3I CGGCCG 1 cut(s) 144
BseXI GCAGC 6 cut(s) 124, 127, 137, 142, 153, 193
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 4 cut(s) 251, 281, 305, 320
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 146, 278, 393
BshNI GGYRCC 3 cut(s) 379, 443, 491
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 485
BsiWI CGTACG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 5 cut(s) 232, 280, 349, 389, 433
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 3 cut(s) 146, 278, 393
Bsp1286I GDGCHC 3 cut(s) 27, 249, 446
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 3 cut(s) 146, 278, 393
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 4 cut(s) 251, 281, 305, 320
BspLI GGNNCC 5 cut(s) 48, 286, 381, 445, 493
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 3 cut(s) 379, 443, 491
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 4 cut(s) 231, 279, 288, 388
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 2 cut(s) 275, 389
Bst4CI ACNGT 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 199, 249
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 2 cut(s) 231, 279
BstFNI CGCG 4 cut(s) 251, 281, 305, 320
BstHHI GCGC 3 cut(s) 253, 307, 317
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 147
BstNI CCWGG 2 cut(s) 275, 389
BstSCI CCNGG 3 cut(s) 273, 387, 483
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 2 cut(s) 249, 446
BstUI CGCG 4 cut(s) 251, 281, 305, 320
BstV1I GCAGC 6 cut(s) 124, 127, 137, 142, 153, 193
BstZI CGGCCG 1 cut(s) 144
BsuRI GGCC 3 cut(s) 146, 278, 393
BtgI CCRYGG 2 cut(s) 231, 279
BtrI CACGTC 1 cut(s) 397
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 199, 249
CciNI GCGGCCGC 1 cut(s) 144
CfoI GCGC 3 cut(s) 253, 307, 317
Cfr13I GGNCC 1 cut(s) 391
Cfr42I CCGCGG 1 cut(s) 282
CseI GACGC 2 cut(s) 304, 311
Csp6I GTAC 3 cut(s) 367, 471, 492
CviQI GTAC 3 cut(s) 367, 471, 492
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DraIII CACNNNGTG 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 144, 276
EagI CGGCCG 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 144
Eco52I CGGCCG 1 cut(s) 144
Eco72I CACGTG 1 cut(s) 501
EcoRII CCWGG 2 cut(s) 273, 387
FaiI YATR 1 cut(s) 207
FaqI GGGAC 1 cut(s) 307
FauI CCCGC 4 cut(s) 274, 455, 460, 481
GlaI GCGC 3 cut(s) 252, 306, 316
HaeIII GGCC 3 cut(s) 146, 278, 393
HapII CCGG 1 cut(s) 485
HgaI GACGC 2 cut(s) 304, 311
HhaI GCGC 3 cut(s) 253, 307, 317
Hin6I GCGC 3 cut(s) 251, 305, 315
HinP1I GCGC 3 cut(s) 251, 305, 315
HinfI GANTC 2 cut(s) 59, 105
HpaII CCGG 1 cut(s) 485
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 362
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 2 cut(s) 396, 500
HpyCH4V TGCA 3 cut(s) 125, 169, 201
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 396, 500
HspAI GCGC 3 cut(s) 251, 305, 315
KpnI GGTACC 1 cut(s) 495
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 3 cut(s) 22, 46, 284
Lsp1109I GCAGC 6 cut(s) 124, 127, 137, 142, 153, 193
MaeII ACGT 2 cut(s) 396, 500
MaeIII GTNAC 2 cut(s) 53, 323
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 3 cut(s) 27, 249, 446
MluCI AATT 1 cut(s) 451
MlyI GAGTC 2 cut(s) 53, 114
MnlI CCTC 8 cut(s) 4, 13, 25, 74, 77, 186, 236, 283
MspA1I CMGCKG 4 cut(s) 166, 281, 376, 402
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 3 cut(s) 275, 389, 485
MvaI CCWGG 2 cut(s) 275, 389
MvnI CGCG 4 cut(s) 251, 281, 305, 320
NciI CCSGG 1 cut(s) 485
NdeII GATC 1 cut(s) 13
NlaIV GGNNCC 5 cut(s) 48, 286, 381, 445, 493
NmeAIII GCCGAG 3 cut(s) 75, 313, 436
NotI GCGGCCGC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 264
Pfl23II CGTACG 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 232
PleI GAGTC 2 cut(s) 53, 113
PmaCI CACGTG 1 cut(s) 501
PmlI CACGTG 1 cut(s) 501
PpsI GAGTC 2 cut(s) 53, 113
Ppu21I YACGTR 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 273, 387
PspCI CACGTG 1 cut(s) 501
PspGI CCWGG 2 cut(s) 273, 387
PspLI CGTACG 1 cut(s) 366
PspN4I GGNNCC 5 cut(s) 48, 286, 381, 445, 493
PspPI GGNCC 1 cut(s) 391
PstI CTGCAG 1 cut(s) 127
PvuII CAGCTG 2 cut(s) 166, 376
RsaI GTAC 3 cut(s) 368, 472, 493
RsaNI GTAC 3 cut(s) 367, 471, 492
SacII CCGCGG 1 cut(s) 282
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 2 cut(s) 53, 114
ScrFI CCNGG 3 cut(s) 275, 389, 485
SduI GDGCHC 3 cut(s) 27, 249, 446
SetI ASST 8 cut(s) 88, 97, 168, 206, 378, 399, 497, 503
SfcI CTRYAG 1 cut(s) 123
Sfr303I CCGCGG 1 cut(s) 282
SgrBI CCGCGG 1 cut(s) 282
Sse9I AATT 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 273, 387, 483
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 2 cut(s) 399, 503
TasI AATT 1 cut(s) 451
TauI GCSGC 8 cut(s) 137, 146, 149, 161, 267, 281, 320, 385
TseI GCWGC 6 cut(s) 125, 137, 140, 155, 166, 181
TspGWI ACGGA 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.