Rw2G017810

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002915
Physical Location & Seq
Reverse (-)
22222904 .. 22225602
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017810.1

Sequence Viewer

Length: 813 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGCGAACAACAACGGAGGAGGAGGAGGTGGTGGCAGAGTCAGAATGGCGAGTTCCGCAGCCGAAGCGGCCGCTTCGGCTGCGGCTCAGCTACAACAACAACAACAACAGCAGACAAGGAGGGCGTGCAGGTATAGGGAGTGCTTGAAGAACCACGCCGTGGGGATTGGAGGGCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCAGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAGGGAGGCCGACGAGCCTTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACAACGGGGGGTTCGGGCACCCGCAATTCTCGGCGAGTGGCGCGTACTACCGCACTCCCGGCGGGTACCTCCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACCTCGGGCGGGGGAGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGCGGCGGCGGAGGAGGGAGTGGGTTTGGAATGGGAATGGGAACGACGTCGTCCAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGAGCGGCTGGGGTGGAGGATTCAGAAGCAGGACGAGGCGGCGGTGCAGAGCTTCTGCGACGAGACCGGAGTGAAGCGTCATGTCCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

270

Amino Acids

29.09

Weight (kDa)

6.37

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 64 - 116 5.9e-28 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 183
Acc65I GGTACC 1 cut(s) 474
AccB1I GGYRCC 3 cut(s) 370, 426, 474
AccB7I CCANNNNNTGG 1 cut(s) 223
AccBSI CCGCTC 1 cut(s) 691
AccI GTMKAC 1 cut(s) 518
AccII CGCG 4 cut(s) 242, 296, 311, 452
AclWI GGATC 2 cut(s) 21, 549
AcoI YGGCCR 1 cut(s) 132
AcvI CACGTG 1 cut(s) 484
AcyI GRCGYC 1 cut(s) 620
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 2 cut(s) 455, 476
AfiI CCNNNNNNNGG 9 cut(s) 223, 271, 340, 343, 380, 415, 528, 572, 633
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 1 cut(s) 211
AhdI GACNNNNNGTC 1 cut(s) 556
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 2 cut(s) 264, 378
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 4 cut(s) 154, 367, 682, 738
AluI AGCT 4 cut(s) 154, 367, 682, 738
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 2 cut(s) 21, 549
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 4 cut(s) 132, 345, 382, 500
ApeKI GCWGC 5 cut(s) 122, 143, 269, 493, 511
Asp700I GAANNNNTTC 1 cut(s) 635
Asp718I GGTACC 1 cut(s) 474
AspLEI GCGC 5 cut(s) 244, 298, 308, 452, 511
AspS9I GGNCC 2 cut(s) 382, 642
AsuC2I CCSGG 1 cut(s) 468
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 1 cut(s) 642
BaeGI GKGCMC 2 cut(s) 240, 429
BanI GGYRCC 3 cut(s) 370, 426, 474
BbrPI CACGTG 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 130, 134, 281, 498, 505
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 2 cut(s) 206, 499
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 2 cut(s) 266, 380
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 743
BfoI RGCGCY 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 183
BglI GCCNNNNNGGC 2 cut(s) 131, 140
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 3 cut(s) 266, 380, 468
Bme18I GGWCC 1 cut(s) 642
BmeRI GACNNNNNGTC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 382, 642
BmiI GGNNCC 5 cut(s) 48, 277, 372, 428, 476
BmrFI CCNGG 3 cut(s) 266, 380, 468
BmsI GCATC 2 cut(s) 663, 774
BpmI CTGGAG 1 cut(s) 698
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 222, 279, 379, 522
BsaWI WCCGGW 1 cut(s) 752
Bsc4I CCNNNNNNNGG 9 cut(s) 223, 271, 340, 343, 380, 415, 528, 572, 633
BseBI CCWGG 2 cut(s) 266, 380
BseDI CCNNGG 4 cut(s) 222, 279, 379, 522
BseGI GGATG 2 cut(s) 678, 789
BseLI CCNNNNNNNGG 9 cut(s) 223, 271, 340, 343, 380, 415, 528, 572, 633
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 6 cut(s) 35, 47, 96, 99, 102, 600
BseSI GKGCMC 2 cut(s) 240, 429
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 5 cut(s) 130, 134, 281, 498, 505
BseYI CCCAGC 2 cut(s) 566, 694
BsgI GTGCAG 2 cut(s) 211, 752
Bsh1236I CGCG 4 cut(s) 242, 296, 311, 452
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 134, 347, 384, 502
BshNI GGYRCC 3 cut(s) 370, 426, 474
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 468, 753
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 9 cut(s) 223, 271, 340, 343, 380, 415, 528, 572, 633
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 4 cut(s) 134, 347, 384, 502
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 27, 240, 429
Bsp143I GATC 2 cut(s) 13, 541
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 4 cut(s) 134, 347, 384, 502
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 4 cut(s) 242, 296, 311, 452
BspLI GGNNCC 5 cut(s) 48, 277, 372, 428, 476
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 2 cut(s) 21, 549
BspT107I GGYRCC 3 cut(s) 370, 426, 474
BspTNI GGTCTC 1 cut(s) 743
BsrBI CCGCTC 1 cut(s) 691
BssECI CCNNGG 4 cut(s) 222, 279, 379, 522
BssMI GATC 2 cut(s) 13, 541
BssNI GRCGYC 1 cut(s) 620
Bst2UI CCWGG 2 cut(s) 266, 380
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 5 cut(s) 66, 190, 240, 507, 684
BstDEI CTNAG 2 cut(s) 150, 810
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 678, 789
BstFNI CGCG 4 cut(s) 242, 296, 311, 452
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 5 cut(s) 244, 298, 308, 452, 511
BstKTI GATC 2 cut(s) 16, 544
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 2 cut(s) 13, 541
BstMCI CGRYCG 1 cut(s) 135
BstNI CCWGG 2 cut(s) 266, 380
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 3 cut(s) 264, 378, 466
BstSLI GKGCMC 2 cut(s) 240, 429
BstUI CGCG 4 cut(s) 242, 296, 311, 452
BstV1I GCAGC 5 cut(s) 130, 134, 281, 498, 505
BstZI CGGCCG 1 cut(s) 132
BsuRI GGCC 4 cut(s) 134, 347, 384, 502
BtgI CCRYGG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 678, 789
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 5 cut(s) 66, 190, 240, 507, 684
CciNI GCGGCCGC 1 cut(s) 132
CfoI GCGC 5 cut(s) 244, 298, 308, 452, 511
Cfr13I GGNCC 2 cut(s) 382, 642
CseI GACGC 4 cut(s) 295, 302, 499, 752
Csp6I GTAC 2 cut(s) 454, 475
CviAII CATG 2 cut(s) 556, 767
CviQI GTAC 2 cut(s) 454, 475
DdeI CTNAG 2 cut(s) 150, 810
DpnI GATC 2 cut(s) 15, 543
DpnII GATC 2 cut(s) 13, 541
DraIII CACNNNGTG 1 cut(s) 223
DriI GACNNNNNGTC 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 626
Eam1105I GACNNNNNGTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 2 cut(s) 597, 701
EclXI CGGCCG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 642
Eco52I CGGCCG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 264, 378
EcoT22I ATGCAT 1 cut(s) 789
FaeI CATG 2 cut(s) 559, 770
FaiI YATR 4 cut(s) 198, 557, 768, 789
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 555, 766
FauI CCCGC 4 cut(s) 265, 438, 464, 521
FblI GTMKAC 1 cut(s) 518
FokI GGATG 2 cut(s) 685, 796
GlaI GCGC 5 cut(s) 243, 297, 307, 451, 510
GsaI CCCAGC 2 cut(s) 570, 698
GsuI CTGGAG 1 cut(s) 698
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 4 cut(s) 134, 347, 384, 502
HapII CCGG 2 cut(s) 468, 753
HgaI GACGC 4 cut(s) 295, 302, 499, 752
HhaI GCGC 5 cut(s) 244, 298, 308, 452, 511
Hin1I GRCGYC 1 cut(s) 620
Hin1II CATG 2 cut(s) 559, 770
Hin6I GCGC 5 cut(s) 242, 296, 306, 450, 509
HinP1I GCGC 5 cut(s) 242, 296, 306, 450, 509
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 4 cut(s) 59, 102, 562, 706
HpaII CCGG 2 cut(s) 468, 753
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 2 cut(s) 107, 711
Hpy188III TCNNGA 4 cut(s) 17, 545, 640, 656
Hpy8I GTNNAC 1 cut(s) 519
Hpy99I CGWCG 7 cut(s) 353, 493, 520, 554, 622, 625, 749
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 3 cut(s) 387, 483, 620
HpyCH4V TGCA 3 cut(s) 192, 733, 787
HpyF3I CTNAG 2 cut(s) 150, 810
HpySE526I ACGT 3 cut(s) 387, 483, 620
Hsp92I GRCGYC 1 cut(s) 620
Hsp92II CATG 2 cut(s) 559, 770
HspAI GCGC 5 cut(s) 242, 296, 306, 450, 509
KpnI GGTACC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 13, 541
LmnI GCTCC 6 cut(s) 22, 46, 275, 658, 679, 688
Lsp1109I GCAGC 5 cut(s) 130, 134, 281, 498, 505
LweI GCATC 2 cut(s) 663, 774
MaeII ACGT 3 cut(s) 387, 483, 620
MaeIII GTNAC 3 cut(s) 53, 314, 484
MalI GATC 2 cut(s) 15, 543
MbiI CCGCTC 1 cut(s) 691
MboI GATC 2 cut(s) 13, 541
MboII GAAGA 2 cut(s) 223, 643
MhlI GDGCHC 3 cut(s) 27, 240, 429
MluCI AATT 1 cut(s) 434
MlyI GAGTC 2 cut(s) 53, 111
Mph1103I ATGCAT 1 cut(s) 789
MroXI GAANNNNTTC 1 cut(s) 635
MspA1I CMGCKG 5 cut(s) 272, 367, 393, 505, 570
MspI CCGG 2 cut(s) 468, 753
MspR9I CCNGG 3 cut(s) 266, 380, 468
MvaI CCWGG 2 cut(s) 266, 380
MvnI CGCG 4 cut(s) 242, 296, 311, 452
NciI CCSGG 1 cut(s) 468
NdeII GATC 2 cut(s) 13, 541
NlaIII CATG 2 cut(s) 559, 770
NlaIV GGNNCC 5 cut(s) 48, 277, 372, 428, 476
NmeAIII GCCGAG 3 cut(s) 75, 304, 419
NmuCI GTSAC 1 cut(s) 484
NotI GCGGCCGC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 789
NspI RCATGY 1 cut(s) 559
PciI ACATGT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 2 cut(s) 562, 706
PflFI GACNNNGTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 223
PleI GAGTC 2 cut(s) 53, 110
PmaCI CACGTG 1 cut(s) 484
PmlI CACGTG 1 cut(s) 484
PpsI GAGTC 2 cut(s) 53, 110
Ppu21I YACGTR 1 cut(s) 484
PscI ACATGT 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 264, 378
PspCI CACGTG 1 cut(s) 484
PspFI CCCAGC 2 cut(s) 566, 694
PspGI CCWGG 2 cut(s) 264, 378
PspN4I GGNNCC 5 cut(s) 48, 277, 372, 428, 476
PspPI GGNCC 2 cut(s) 382, 642
PsyI GACNNNGTC 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 367
RsaI GTAC 2 cut(s) 455, 476
RsaNI GTAC 2 cut(s) 454, 475
SalI GTCGAC 1 cut(s) 517
Sau3AI GATC 2 cut(s) 13, 541
Sau96I GGNCC 2 cut(s) 382, 642
SchI GAGTC 2 cut(s) 53, 111
ScrFI CCNGG 3 cut(s) 266, 380, 468
SduI GDGCHC 3 cut(s) 27, 240, 429
SfaNI GCATC 2 cut(s) 663, 774
SinI GGWCC 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 264, 378, 466
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 3 cut(s) 390, 486, 623
TaqI TCGA 2 cut(s) 518, 560
TasI AATT 1 cut(s) 434
TfiI GAWTC 2 cut(s) 562, 706
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 5 cut(s) 122, 143, 269, 493, 511
Tsp45I GTSAC 1 cut(s) 484
TspGWI ACGGA 2 cut(s) 93, 554
Tth111I GACNNNGTC 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 642
XceI RCATGY 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 635
ZraI GACGTC 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.