Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Forward (+)

63655877 .. 63658898

Gene Structure 3022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG448300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAATTCAACGACCAGCACGAAGAACAAAATGAGGAAATGGAGATGAGCCCGACGGCGCCAACACCACCTCGTTACGACGCTTCCATGCTCAAAATGGGGCCCTCTAGCGGCGGCGGAGGAGGTGGAGGAGAGGCCACAGCCAGAAAAAGGGGTCCCTCCATCTCGACCGTCTCCACTATCAGGTACAGAGAATGCCAGAAGAACCACGCCGTTAACATCGGAGGCCATGCCCTCGATGGTTGCTGCGAGTTCCTTGCGGCCGGAGAGGAGGGCACGCTCGACGCCCTCAAATGCGCCGCGTGCAACTGCCACCGCAATTTCCACCGGAAGGAGCCAGCGGAAGGAGGTGGTGGGGCCATTCTTCCCCACCAACACACCCAGCAGCCGTTCTCGGCTTACTACCGCCACCCTTATCCGCCCACGCCATCGGGTTACCTCCACCTGACCCCGGCGCAGCCGCATAGGCCTCTGGCCTTGCCCGCGGCTGGGTCGGGAGGGTCCCACAGCAGGGAGGAAGGGGATGACGTGTCGAACCCGAGTTCTAGCGGGGGCGGCGGGAGTGGAGTTGGGCTGTTGAAAAAGAGATTTAGGACCAAGTTTACGGCGGTGCAGAAGGAGAAGATGGTGGAGTTTGCTGAGAAGGTGGGGTGGCGGATTCAGAAGCACGACGAGGCGGCGGTGGAGGAGTTCTGCGCCGAGACTGGGGTGAAACGACAGGTGCTCAAGGTTTGGATGCACAACAACAAGCACACTATCGGTAAGAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

257

Amino Acids

27.77

Weight (kDa)

8.14

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	61 - 113	3.9e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccII	CGCG	2 cut(s)	302, 485
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	59, 285
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	2 cut(s)	10, 580
AjiI	CACGTC	1 cut(s)	529
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	2 cut(s)	178, 695
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	7 cut(s)	101, 135, 226, 261, 357, 467, 474
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	246, 385, 457
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	4 cut(s)	61, 299, 457, 698
AspS9I	GGNCC	6 cut(s)	101, 102, 155, 357, 501, 594
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	3 cut(s)	155, 501, 594
BaeGI	GKGCMC	2 cut(s)	105, 278
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	53, 105
Bbv12I	GWGCWC	1 cut(s)	726
BbvI	GCAGC	3 cut(s)	233, 397, 469
BccI	CCATC	4 cut(s)	170, 233, 436, 619
BceAI	ACGGC	4 cut(s)	72, 197, 373, 621
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	178, 695
BfaI	CTAG	2 cut(s)	108, 546
BfoI	RGCGCY	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	3 cut(s)	155, 501, 594
BmeT110I	CYCGRG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	6 cut(s)	101, 102, 155, 357, 501, 594
BmiI	GGNNCC	9 cut(s)	60, 102, 103, 156, 157, 336, 358, 502, 503
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	726
BmuI	ACTGGG	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	452
BsaHI	GRCGYC	2 cut(s)	59, 285
BsaJI	CCNNGG	2 cut(s)	450, 483
BsaWI	WCCGGW	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	709
BseDI	CCNNGG	2 cut(s)	450, 483
BseGI	GGATG	2 cut(s)	529, 741
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	4 cut(s)	135, 144, 284, 701
BseSI	GKGCMC	2 cut(s)	105, 278
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	233, 397, 469
BseYI	CCCAGC	2 cut(s)	381, 488
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	302, 485
Bsh1285I	CGRYCG	2 cut(s)	171, 264
BshFI	GGCC	7 cut(s)	103, 137, 228, 263, 359, 469, 476
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	2 cut(s)	171, 264
BsiHKAI	GWGCWC	1 cut(s)	726
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	264, 328, 452
BslFI	GGGAC	2 cut(s)	141, 487
BsmAI	GTCTC	2 cut(s)	178, 695
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	141, 487
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	7 cut(s)	103, 137, 228, 263, 359, 469, 476
BsoBI	CYCGRG	1 cut(s)	538
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	53, 105, 278, 726
BspANI	GGCC	7 cut(s)	103, 137, 228, 263, 359, 469, 476
BspCNI	CTCAG	1 cut(s)	631
BspFNI	CGCG	2 cut(s)	302, 485
BspLI	GGNNCC	9 cut(s)	60, 102, 103, 156, 157, 336, 358, 502, 503
BspT107I	GGYRCC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	2 cut(s)	450, 483
BssNI	GRCGYC	2 cut(s)	59, 285
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	2 cut(s)	59, 285
BstC8I	GCNNGC	4 cut(s)	278, 304, 339, 483
BstDEI	CTNAG	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	483
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	529, 741
BstFNI	CGCG	2 cut(s)	302, 485
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	4 cut(s)	61, 299, 457, 698
BstMAI	GTCTC	2 cut(s)	178, 695
BstMCI	CGRYCG	2 cut(s)	171, 264
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 466, 482, 555
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	450
BstSLI	GKGCMC	2 cut(s)	105, 278
BstUI	CGCG	2 cut(s)	302, 485
BstV1I	GCAGC	3 cut(s)	233, 397, 469
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	7 cut(s)	103, 137, 228, 263, 359, 469, 476
BtgI	CCRYGG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	529, 741
Cac8I	GCNNGC	4 cut(s)	278, 304, 339, 483
CfoI	GCGC	4 cut(s)	61, 299, 457, 698
Cfr13I	GGNCC	6 cut(s)	101, 102, 155, 357, 501, 594
Cfr42I	CCGCGG	1 cut(s)	486
CseI	GACGC	2 cut(s)	89, 293
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	88, 230
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	639
DinI	GGCGCC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
EciI	GGCGGA	3 cut(s)	132, 408, 670
EclXI	CGGCCG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	2 cut(s)	53, 105
Eco47I	GGWCC	3 cut(s)	155, 501, 594
Eco52I	CGGCCG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	434
EcoO109I	RGGNCCY	4 cut(s)	101, 102, 155, 501
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	2 cut(s)	53, 105
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	91, 233
FaiI	YATR	3 cut(s)	89, 231, 465
FaqI	GGGAC	2 cut(s)	141, 487
FatI	CATG	2 cut(s)	87, 229
FauI	CCCGC	3 cut(s)	490, 542, 551
FokI	GGATG	2 cut(s)	536, 748
FriOI	GRGCYC	2 cut(s)	53, 105
FspBI	CTAG	2 cut(s)	108, 546
GlaI	GCGC	4 cut(s)	60, 298, 456, 697
GsaI	CCCAGC	2 cut(s)	385, 492
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	7 cut(s)	103, 137, 228, 263, 359, 469, 476
HapII	CCGG	3 cut(s)	264, 328, 452
HgaI	GACGC	2 cut(s)	89, 293
HhaI	GCGC	4 cut(s)	61, 299, 457, 698
Hin1I	GRCGYC	2 cut(s)	59, 285
Hin1II	CATG	2 cut(s)	91, 233
Hin6I	GCGC	4 cut(s)	59, 297, 455, 696
HinP1I	GCGC	4 cut(s)	59, 297, 455, 696
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	658
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	264, 328, 452
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	2 cut(s)	217, 603
Hpy188I	TCNGA	2 cut(s)	224, 663
Hpy188III	TCNNGA	2 cut(s)	166, 495
Hpy8I	GTNNAC	2 cut(s)	217, 603
Hpy99I	CGWCG	4 cut(s)	58, 83, 287, 674
HpyAV	CCTTC	5 cut(s)	325, 338, 512, 610, 637
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	3 cut(s)	306, 613, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 466, 482, 555
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	2 cut(s)	59, 285
Hsp92II	CATG	2 cut(s)	91, 233
HspAI	GCGC	4 cut(s)	59, 297, 455, 696
KasI	GGCGCC	1 cut(s)	58
KflI	GGGWCCC	2 cut(s)	155, 501
KspAI	GTTAAC	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	486
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	3 cut(s)	233, 397, 469
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	2 cut(s)	108, 546
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	74, 434
MboII	GAAGA	4 cut(s)	35, 214, 356, 634
MhlI	GDGCHC	4 cut(s)	53, 105, 278, 726
MluCI	AATT	2 cut(s)	5, 319
Mly113I	GGCGCC	1 cut(s)	59
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	341, 485
MspI	CCGG	3 cut(s)	264, 328, 452
MspR9I	CCNGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	200
MvnI	CGCG	2 cut(s)	302, 485
MwoI	GCNNNNNNNGC	4 cut(s)	303, 466, 482, 555
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	452
NlaIII	CATG	2 cut(s)	91, 233
NlaIV	GGNNCC	9 cut(s)	60, 102, 103, 156, 157, 336, 358, 502, 503
NmeAIII	GCCGAG	2 cut(s)	374, 724
PceI	AGGCCT	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	658
PluTI	GGCGCC	1 cut(s)	62
PpuMI	RGGWCCY	2 cut(s)	155, 501
Psp5II	RGGWCCY	2 cut(s)	155, 501
PspEI	GGTNACC	1 cut(s)	434
PspFI	CCCAGC	2 cut(s)	381, 488
PspN4I	GGNNCC	9 cut(s)	60, 102, 103, 156, 157, 336, 358, 502, 503
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	6 cut(s)	101, 102, 155, 357, 501, 594
PspPPI	RGGWCCY	2 cut(s)	155, 501
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	216
Sau96I	GGNCC	6 cut(s)	101, 102, 155, 357, 501, 594
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	4 cut(s)	53, 105, 278, 726
SfaNI	GCATC	1 cut(s)	726
SfoI	GGCGCC	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	486
SgrBI	CCGCGG	1 cut(s)	486
SinI	GGWCC	3 cut(s)	155, 501, 594
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	2 cut(s)	5, 319
SseBI	AGGCCT	1 cut(s)	469
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	108, 546
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	4 cut(s)	167, 237, 282, 533
TasI	AATT	2 cut(s)	5, 319
TauI	GCSGC	8 cut(s)	114, 117, 263, 302, 463, 488, 558, 680
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	3 cut(s)	246, 385, 457
VpaK11BI	GGWCC	3 cut(s)	155, 501, 594
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 236
XspI	CTAG	2 cut(s)	108, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.