Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Forward (+)

26314086 .. 26315964

Gene Structure 1879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35900.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAATTCAACGACCATCACGAGGACCAAGACGAGGACATGGAGCTGAGCCCGACGGCGCCAACACCGCCAGGTTACGACTCTTCCAGGTCCAAAATGGGCCCCACTAGCGGCGGAGGAGGAGGAGATGGCGCCGCCAGAAAAAGGGTTCCTACTATCAGGTACAGAGAATGCTTGAAGAACCACGCCGTTAACATCGGAGGCCATGCCCTCGACGGTTGCGGCGAGTTCCTTGCGGCCGGTGAGGAGGGTTCACTCGACGCGCTGAAATGCGCCGCGTGCAACTGCCACCGCAACTTCCACCGCAAGGAGCCCGCGGAAGGTGGTGGTGGTGGGGCCACCATCGCCCACCAACAACACTCCCAGCAGCAGCCTTTCTCGGCTTACTACGGCCACCCTTATCCACCGCCCCCGCCTTCGGGTTACCTCCACCTCACCCCGGCGCAGCCGCAGAGGCCTCTGGCCTTGCCCGCGGCGGCTGGCTCGGGCGGGTCCCACAGCAGGGAGGAGCTGGATGACGTGTCGAACCCGAGTTCTAGCGGGGGCGGCGGGAGTGGGGTGGGGCTGTTGAGGAAGAGGTTTAGGACCAAGTTCACGGCGGAGCAGAAGGAGAAGATGGTGGAGTTTGCAGAGAAGGTGGGGTGGCGGATTCAGAAGCACGACGAGGCGGCGGTGGAGGAGTTCTGCGCCGTGACGGGGGTGAAACGACAGGTGCTCAAGGTTTGGATGCACAACAACAAGCACACTATCGGTAAGAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

255

Amino Acids

27.28

Weight (kDa)

7.24

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	53 - 105	1.1e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 131
AccII	CGCG	4 cut(s)	263, 278, 317, 473
AcoI	YGGCCR	2 cut(s)	237, 391
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	59, 132
AfaI	GTAC	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	10, 178
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	70, 86
AluBI	AGCT	2 cut(s)	46, 511
AluI	AGCT	2 cut(s)	46, 511
Alw21I	GWGCWC	1 cut(s)	717
Ama87I	CYCGRG	2 cut(s)	484, 529
AoxI	GGCC	7 cut(s)	100, 202, 237, 336, 391, 455, 462
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	3 cut(s)	367, 370, 445
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	6 cut(s)	61, 134, 265, 275, 445, 689
AspS9I	GGNCC	7 cut(s)	25, 90, 100, 101, 336, 492, 585
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	254, 427, 712
AvaI	CYCGRG	2 cut(s)	484, 529
AvaII	GGWCC	4 cut(s)	25, 90, 492, 585
BaeGI	GKGCMC	1 cut(s)	104
BanI	GGYRCC	2 cut(s)	58, 131
BanII	GRGCYC	3 cut(s)	53, 104, 315
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	3 cut(s)	379, 382, 457
BccI	CCATC	4 cut(s)	24, 122, 350, 610
BceAI	ACGGC	5 cut(s)	72, 173, 406, 612, 674
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	72, 88
BcnI	CCSGG	1 cut(s)	440
BfaI	CTAG	2 cut(s)	108, 537
BfoI	RGCGCY	2 cut(s)	62, 135
BglI	GCCNNNNNGGC	1 cut(s)	454
BlpI	GCTNAGC	1 cut(s)	47
Bme1390I	CCNGG	3 cut(s)	72, 88, 440
Bme18I	GGWCC	4 cut(s)	25, 90, 492, 585
BmeT110I	CYCGRG	2 cut(s)	484, 529
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	7 cut(s)	25, 90, 100, 101, 336, 492, 585
BmiI	GGNNCC	9 cut(s)	60, 102, 103, 133, 150, 312, 337, 493, 494
BmrFI	CCNGG	3 cut(s)	72, 88, 440
BmsI	GCATC	1 cut(s)	717
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	440
BsaHI	GRCGYC	2 cut(s)	59, 132
BsaJI	CCNNGG	3 cut(s)	315, 438, 471
Bse118I	RCCGGY	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	72, 88
BseDI	CCNNGG	3 cut(s)	315, 438, 471
BseGI	GGATG	2 cut(s)	520, 732
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	6 cut(s)	132, 135, 138, 260, 521, 692
BseSI	GKGCMC	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	379, 382, 457
BseYI	CCCAGC	1 cut(s)	363
Bsh1236I	CGCG	4 cut(s)	263, 278, 317, 473
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	7 cut(s)	102, 204, 239, 338, 393, 457, 464
BshNI	GGYRCC	2 cut(s)	58, 131
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	2 cut(s)	484, 529
BsiSI	CCGG	2 cut(s)	240, 440
BslFI	GGGAC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	7 cut(s)	102, 204, 239, 338, 393, 457, 464
BsoBI	CYCGRG	2 cut(s)	484, 529
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	4 cut(s)	53, 104, 315, 717
Bsp1720I	GCTNAGC	1 cut(s)	47
BspANI	GGCC	7 cut(s)	102, 204, 239, 338, 393, 457, 464
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	4 cut(s)	263, 278, 317, 473
BspLI	GGNNCC	9 cut(s)	60, 102, 103, 133, 150, 312, 337, 493, 494
BspT107I	GGYRCC	2 cut(s)	58, 131
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	315, 438, 471
BssNI	GRCGYC	2 cut(s)	59, 132
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	72, 88
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	2 cut(s)	88, 569
BstACI	GRCGYC	2 cut(s)	59, 132
BstC8I	GCNNGC	4 cut(s)	280, 315, 471, 481
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	2 cut(s)	315, 471
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	520, 732
BstFNI	CGCG	4 cut(s)	263, 278, 317, 473
BstH2I	RGCGCY	2 cut(s)	62, 135
BstHHI	GCGC	6 cut(s)	61, 134, 265, 275, 445, 689
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 108, 279, 344, 454, 470, 546
BstNI	CCWGG	2 cut(s)	72, 88
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	70, 86, 438
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	4 cut(s)	263, 278, 317, 473
BstV1I	GCAGC	3 cut(s)	379, 382, 457
BstZI	CGGCCG	1 cut(s)	237
BsuRI	GGCC	7 cut(s)	102, 204, 239, 338, 393, 457, 464
BtgI	CCRYGG	2 cut(s)	315, 471
BtgZI	GCGATG	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	520, 732
Cac8I	GCNNGC	4 cut(s)	280, 315, 471, 481
CfoI	GCGC	6 cut(s)	61, 134, 265, 275, 445, 689
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	7 cut(s)	25, 90, 100, 101, 336, 492, 585
Cfr42I	CCGCGG	2 cut(s)	318, 474
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	40, 206
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	47
DinI	GGCGCC	2 cut(s)	60, 133
EaeI	YGGCCR	2 cut(s)	237, 391
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	88, 569
EarI	CTCTTC	2 cut(s)	88, 569
EciI	GGCGGA	3 cut(s)	129, 614, 661
EclXI	CGGCCG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	457
Eco24I	GRGCYC	3 cut(s)	53, 104, 315
Eco47I	GGWCC	4 cut(s)	25, 90, 492, 585
Eco52I	CGGCCG	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	484, 529
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	2 cut(s)	101, 492
EcoO65I	GGTNACC	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	70, 86
EcoT38I	GRGCYC	3 cut(s)	53, 104, 315
EgeI	GGCGCC	2 cut(s)	60, 133
EheI	GGCGCC	2 cut(s)	60, 133
FaeI	CATG	2 cut(s)	43, 209
FaiI	YATR	2 cut(s)	41, 207
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	39, 205
FauI	CCCGC	6 cut(s)	322, 420, 478, 482, 533, 542
FokI	GGATG	2 cut(s)	527, 739
FriOI	GRGCYC	3 cut(s)	53, 104, 315
FspBI	CTAG	2 cut(s)	108, 537
GlaI	GCGC	6 cut(s)	60, 133, 264, 274, 444, 688
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	2 cut(s)	62, 135
HaeIII	GGCC	7 cut(s)	102, 204, 239, 338, 393, 457, 464
HapII	CCGG	2 cut(s)	240, 440
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	6 cut(s)	61, 134, 265, 275, 445, 689
Hin1I	GRCGYC	2 cut(s)	59, 132
Hin1II	CATG	2 cut(s)	43, 209
Hin6I	GCGC	6 cut(s)	59, 132, 263, 273, 443, 687
HinP1I	GCGC	6 cut(s)	59, 132, 263, 273, 443, 687
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	80, 649
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	240, 440
HphI	GGTGA	3 cut(s)	254, 427, 712
Hpy166II	GTNNAC	3 cut(s)	193, 254, 594
Hpy188I	TCNGA	2 cut(s)	200, 654
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	3 cut(s)	193, 254, 594
Hpy99I	CGWCG	4 cut(s)	58, 218, 263, 665
HpyAV	CCTTC	4 cut(s)	314, 426, 601, 628
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	282, 629, 730
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 108, 279, 344, 454, 470, 546
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	2 cut(s)	59, 132
Hsp92II	CATG	2 cut(s)	43, 209
HspAI	GCGC	6 cut(s)	59, 132, 263, 273, 443, 687
KasI	GGCGCC	2 cut(s)	58, 131
KflI	GGGWCCC	1 cut(s)	492
KspAI	GTTAAC	1 cut(s)	193
KspI	CCGCGG	2 cut(s)	318, 474
LmnI	GCTCC	4 cut(s)	43, 310, 508, 601
Lsp1109I	GCAGC	3 cut(s)	379, 382, 457
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	2 cut(s)	108, 537
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	3 cut(s)	74, 422, 691
MboII	GAAGA	4 cut(s)	75, 190, 586, 625
MhlI	GDGCHC	4 cut(s)	53, 104, 315, 717
MluCI	AATT	1 cut(s)	5
Mly113I	GGCGCC	2 cut(s)	59, 132
MlyI	GAGTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	317, 473
MspI	CCGG	2 cut(s)	240, 440
MspR9I	CCNGG	3 cut(s)	72, 88, 440
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	72, 88
MvnI	CGCG	4 cut(s)	263, 278, 317, 473
MwoI	GCNNNNNNNGC	7 cut(s)	67, 108, 279, 344, 454, 470, 546
NarI	GGCGCC	2 cut(s)	59, 132
NciI	CCSGG	1 cut(s)	440
NlaIII	CATG	2 cut(s)	43, 209
NlaIV	GGNNCC	9 cut(s)	60, 102, 103, 133, 150, 312, 337, 493, 494
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 222
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	74
PluTI	GGCGCC	2 cut(s)	62, 135
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	70, 86
PspEI	GGTNACC	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	2 cut(s)	70, 86
PspN4I	GGNNCC	9 cut(s)	60, 102, 103, 133, 150, 312, 337, 493, 494
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	7 cut(s)	25, 90, 100, 101, 336, 492, 585
PspPPI	RGGWCCY	1 cut(s)	492
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacII	CCGCGG	2 cut(s)	318, 474
SaqAI	TTAA	1 cut(s)	192
Sau96I	GGNCC	7 cut(s)	25, 90, 100, 101, 336, 492, 585
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	72, 88, 440
SduI	GDGCHC	4 cut(s)	53, 104, 315, 717
SfaNI	GCATC	1 cut(s)	717
SfoI	GGCGCC	2 cut(s)	60, 133
Sfr303I	CCGCGG	2 cut(s)	318, 474
SgrBI	CCGCGG	2 cut(s)	318, 474
SinI	GGWCC	4 cut(s)	25, 90, 492, 585
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	457
SspDI	GGCGCC	2 cut(s)	58, 131
SspMI	CTAG	2 cut(s)	108, 537
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	70, 86, 438
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	3 cut(s)	213, 258, 524
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	3 cut(s)	367, 370, 445
Tsp45I	GTSAC	1 cut(s)	691
VpaK11BI	GGWCC	4 cut(s)	25, 90, 492, 585
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	2 cut(s)	108, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.