Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

16566033 .. 16566854

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAATTTGATGAGCACGAAGAGCAAGACGAGGAGATGGAGATGCAGGCGGCGCCACCGGGTTACGCCTCTGTTGCAGAGAGTTCCAGGCCCAAAATGGGGCCCGCCGGCGAGGAGACCGTCTCCAGTTCTCGAAAAAGGGGGACTGCCGCAGCACCCAATTCCACCACCACCACCACCCTAGCCACCATGGTCAGGTACAGGGAATGCCTCAAGAACCACGCCGTCAGCATCGGCGGTCACGCCCTCGACGGCTGTGGCGAGTTTCTCTCTGCGGGGGATGAGGGCACCATCGACGCCCTAAAATGTGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGTCCGAGGGCGAGTTAATTCATCACCACCAGGGTGCCGGTGGGTCCCACCAGCTTCACCACCACCACCATCAGCATCAATTCTCCTCAGGCTACTGTCGCCCACCGCCACCGCCTTCTGGCTACCTGATCACCTCGCCGCACGCAAGGCCTACACTAGCCTTGCCTGCGGCATCCATCCGCGGCGGCGGAGGGTCTCATAGTAGGGAAGAGGGAGAGGACGTGTCGAATCCAAGTTCGAGTGGCGGTGGAGGCGGAGGAGGATTTGGGATGAGTAAGAAGAGACACCGGACAAAGTTCACGCAGGAGCAGAAGGAGAAGATGTTGGAGTTTGCGGAGAAAGTTGGGTGGAGGATTCAGAAACACGACGAGGCGGCGATTGAGGAGTTTTGCGGAGAGACTGGAGTGAAGCGCCATGTGCTCAAGGTTTGGATGCACAACAACAAGCACACTCTTGGTAAGAAATTAGTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

274

Amino Acids

29.64

Weight (kDa)

6.89

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	65 - 117	9e-30	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	52, 287, 380
AccII	CGCG	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	53, 297
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	5 cut(s)	98, 99, 195, 343, 464
AflIII	ACRYGT	1 cut(s)	567
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	86, 375
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw21I	GWGCWC	2 cut(s)	18, 768
Alw26I	GTCTC	5 cut(s)	110, 127, 546, 622, 737
AoxI	GGCC	3 cut(s)	89, 101, 494
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	55, 759
AspS9I	GGNCC	4 cut(s)	90, 101, 102, 390
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	362, 395, 469
AvaII	GGWCC	1 cut(s)	390
AxyI	CCTNAGG	1 cut(s)	433
BaeGI	GKGCMC	3 cut(s)	105, 290, 819
BanI	GGYRCC	3 cut(s)	52, 287, 380
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	18, 768
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	4 cut(s)	31, 299, 423, 530
BceAI	ACGGC	2 cut(s)	209, 268
BciT130I	CCWGG	2 cut(s)	88, 377
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	5 cut(s)	110, 127, 546, 622, 737
BfaI	CTAG	2 cut(s)	182, 503
BfoI	RGCGCY	2 cut(s)	56, 760
BisI	GCNGC	9 cut(s)	51, 150, 153, 312, 485, 516, 529, 532, 720
BlsI	GCNGC	9 cut(s)	52, 151, 154, 313, 486, 517, 530, 533, 721
Bme1390I	CCNGG	3 cut(s)	60, 88, 377
Bme18I	GGWCC	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	4 cut(s)	90, 101, 102, 390
BmiI	GGNNCC	7 cut(s)	54, 102, 103, 289, 382, 391, 392
BmrFI	CCNGG	3 cut(s)	60, 88, 377
BmsI	GCATC	5 cut(s)	33, 240, 430, 527, 768
BplI	GAGNNNNNCTC	4 cut(s)	107, 139, 254, 286
BpmI	CTGGAG	2 cut(s)	109, 768
BpuEI	CTTGAG	2 cut(s)	197, 752
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	53, 297
BsaI	GGTCTC	2 cut(s)	110, 546
BsaJI	CCNNGG	4 cut(s)	189, 351, 376, 526
BsaWI	WCCGGW	1 cut(s)	633
BsaXI	ACNNNNNCTCC	4 cut(s)	552, 582, 653, 683
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 99, 195, 343, 464
Bse118I	RCCGGY	2 cut(s)	107, 383
Bse1I	ACTGG	2 cut(s)	126, 751
Bse21I	CCTNAGG	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	88, 377
BseDI	CCNNGG	4 cut(s)	189, 351, 376, 526
BseGI	GGATG	5 cut(s)	286, 518, 522, 621, 783
BseLI	CCNNNNNNNGG	5 cut(s)	98, 99, 195, 343, 464
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	126, 751
BseRI	GAGGAG	5 cut(s)	47, 128, 421, 618, 743
BseSI	GKGCMC	3 cut(s)	105, 290, 819
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	91, 103, 496
BshNI	GGYRCC	3 cut(s)	52, 287, 380
BsiHKAI	GWGCWC	2 cut(s)	18, 768
BsiSI	CCGG	4 cut(s)	59, 108, 384, 634
BslFI	GGGAC	2 cut(s)	157, 376
BslI	CCNNNNNNNGG	5 cut(s)	98, 99, 195, 343, 464
BsmAI	GTCTC	5 cut(s)	110, 127, 546, 622, 737
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	157, 376
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	91, 103, 496
Bso31I	GGTCTC	2 cut(s)	110, 546
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	5 cut(s)	18, 105, 290, 768, 819
Bsp143I	GATC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	189
BspANI	GGCC	3 cut(s)	91, 103, 496
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	7 cut(s)	54, 102, 103, 289, 382, 391, 392
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	3 cut(s)	52, 287, 380
BspTNI	GGTCTC	2 cut(s)	110, 546
BsrFI	RCCGGY	2 cut(s)	107, 383
BsrI	ACTGG	2 cut(s)	126, 751
BssAI	RCCGGY	2 cut(s)	107, 383
BssECI	CCNNGG	4 cut(s)	189, 351, 376, 526
BssMI	GATC	1 cut(s)	474
BssNI	GRCGYC	2 cut(s)	53, 297
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	88, 377
Bst4CI	ACNGT	2 cut(s)	121, 443
Bst6I	CTCTTC	3 cut(s)	15, 549, 620
BstACI	GRCGYC	2 cut(s)	53, 297
BstC8I	GCNNGC	6 cut(s)	48, 105, 109, 316, 489, 513
BstDEI	CTNAG	1 cut(s)	433
BstDSI	CCRYGG	2 cut(s)	189, 526
BstF5I	GGATG	5 cut(s)	286, 518, 522, 621, 783
BstFNI	CGCG	1 cut(s)	528
BstH2I	RGCGCY	2 cut(s)	56, 760
BstHHI	GCGC	2 cut(s)	55, 759
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	5 cut(s)	110, 127, 546, 622, 737
BstMBI	GATC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 52, 74, 444, 493, 512, 597, 763
BstNI	CCWGG	2 cut(s)	88, 377
BstSCI	CCNGG	3 cut(s)	58, 86, 375
BstSLI	GKGCMC	3 cut(s)	105, 290, 819
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	433
BsuRI	GGCC	3 cut(s)	91, 103, 496
BtgI	CCRYGG	2 cut(s)	189, 526
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	5 cut(s)	286, 518, 522, 621, 783
Cac8I	GCNNGC	6 cut(s)	48, 105, 109, 316, 489, 513
CfoI	GCGC	2 cut(s)	55, 759
Cfr10I	RCCGGY	2 cut(s)	107, 383
Cfr13I	GGNCC	4 cut(s)	90, 101, 102, 390
Cfr42I	CCGCGG	1 cut(s)	529
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	190, 761
CviJI	RGCY	9 cut(s)	91, 103, 185, 255, 400, 438, 468, 496, 506
CviKI_1	RGCY	9 cut(s)	91, 103, 185, 255, 400, 438, 468, 496, 506
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	433
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	15, 549, 620
EarI	CTCTTC	3 cut(s)	15, 549, 620
EciI	GGCGGA	2 cut(s)	549, 615
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	110, 546
Eco47I	GGWCC	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	433
EcoO109I	RGGNCCY	2 cut(s)	101, 390
EcoRII	CCWGG	2 cut(s)	86, 375
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	105
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	2 cut(s)	193, 764
FaiI	YATR	3 cut(s)	191, 546, 762
FaqI	GGGAC	2 cut(s)	157, 376
FatI	CATG	2 cut(s)	189, 760
FauI	CCCGC	2 cut(s)	112, 268
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	9 cut(s)	51, 150, 153, 312, 485, 516, 529, 532, 720
FokI	GGATG	5 cut(s)	293, 505, 509, 628, 790
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	9 cut(s)	51, 150, 153, 312, 485, 516, 529, 532, 720
FspBI	CTAG	2 cut(s)	182, 503
GlaI	GCGC	2 cut(s)	54, 758
GluI	GCNGC	9 cut(s)	51, 150, 153, 312, 485, 516, 529, 532, 720
GsuI	CTGGAG	2 cut(s)	109, 768
HaeII	RGCGCY	2 cut(s)	56, 760
HaeIII	GGCC	3 cut(s)	91, 103, 496
HapII	CCGG	4 cut(s)	59, 108, 384, 634
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	55, 759
Hin1I	GRCGYC	2 cut(s)	53, 297
Hin1II	CATG	2 cut(s)	193, 764
Hin6I	GCGC	2 cut(s)	53, 757
HinP1I	GCGC	2 cut(s)	53, 757
HinfI	GANTC	3 cut(s)	347, 574, 700
HpaII	CCGG	4 cut(s)	59, 108, 384, 634
HphI	GGTGA	3 cut(s)	362, 395, 469
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	2 cut(s)	352, 705
Hpy188III	TCNNGA	2 cut(s)	132, 214
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	3 cut(s)	254, 299, 716
HpyAV	CCTTC	2 cut(s)	471, 652
HpyCH4III	ACNGT	2 cut(s)	121, 443
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	4 cut(s)	46, 77, 318, 781
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 52, 74, 444, 493, 512, 597, 763
HpyF3I	CTNAG	1 cut(s)	433
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	2 cut(s)	53, 297
Hsp92II	CATG	2 cut(s)	193, 764
HspAI	GCGC	2 cut(s)	53, 757
KasI	GGCGCC	1 cut(s)	52
KflI	GGGWCCC	1 cut(s)	390
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	474
KspI	CCGCGG	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	474
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	5 cut(s)	33, 240, 430, 527, 768
MaeI	CTAG	2 cut(s)	182, 503
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	62, 239
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	4 cut(s)	32, 566, 637, 676
MhlI	GDGCHC	5 cut(s)	18, 105, 290, 768, 819
MluCI	AATT	5 cut(s)	5, 160, 363, 425, 809
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	651
MreI	CGCCGGCG	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	528
MspI	CCGG	4 cut(s)	59, 108, 384, 634
MspR9I	CCNGG	3 cut(s)	60, 88, 377
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	2 cut(s)	88, 377
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	8 cut(s)	22, 52, 74, 444, 493, 512, 597, 763
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	474
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	193, 764
NlaIV	GGNNCC	7 cut(s)	54, 102, 103, 289, 382, 391, 392
NmuCI	GTSAC	1 cut(s)	239
OliI	CACNNNNGTG	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	574, 700
PkrI	GCNGC	9 cut(s)	52, 151, 154, 313, 486, 517, 530, 533, 721
PleI	GAGTC	1 cut(s)	355
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	86, 375
PspGI	CCWGG	2 cut(s)	86, 375
PspN4I	GGNNCC	7 cut(s)	54, 102, 103, 289, 382, 391, 392
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	90, 101, 102, 390
PspPPI	RGGWCCY	1 cut(s)	390
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	378
SacII	CCGCGG	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	9 cut(s)	51, 150, 153, 312, 485, 516, 529, 532, 720
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	4 cut(s)	90, 101, 102, 390
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	60, 88, 377
SduI	GDGCHC	5 cut(s)	18, 105, 290, 768, 819
SetI	ASST	6 cut(s)	200, 402, 474, 482, 570, 774
SfaNI	GCATC	5 cut(s)	33, 240, 430, 527, 768
SfoI	GGCGCC	1 cut(s)	54
Sfr303I	CCGCGG	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	529
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	212, 767
SmoI	CTYRAG	2 cut(s)	212, 767
Sse9I	AATT	5 cut(s)	5, 160, 363, 425, 809
SseBI	AGGCCT	1 cut(s)	496
SspDI	GGCGCC	1 cut(s)	52
SspMI	CTAG	2 cut(s)	182, 503
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	3 cut(s)	58, 86, 375
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	121, 443
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	5 cut(s)	133, 249, 294, 572, 584
TasI	AATT	5 cut(s)	5, 160, 363, 425, 809
TauI	GCSGC	8 cut(s)	53, 152, 314, 487, 518, 531, 534, 722
TfiI	GAWTC	2 cut(s)	574, 700
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 383
XspI	CTAG	2 cut(s)	182, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.