Rh2BG243000

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002915
Physical Location & Seq
Reverse (-)
24435053 .. 24438288
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG243000.1

Sequence Viewer

Length: 813 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACAACGGAGGAGGTGGTGGCAGAGTCAGAATGGCGAGTTCCGCAGCCGAAGAGGCCGCTTCGGCTGCGGCTCAGCTACAACAACAACAACAGCAGACACGGAGGGCGTGCAGGTATAGGGAGTGCCGGAAGAACCACGCCGTGGGGATTGGAGGCCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCCGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGGAACTTCCACCGCAGGGAGGCCGACGAGCCTTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACCACGGGGGGTTCGGGCACCCGCAATTCTCGGCGAGTGGCGGGTACTACCGCACTCCCGGCGGGTACCTCCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACCTCGGGTGGGGGAGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGCGGCGGCGGAGGAGGGAGTGGGTTTGGAATGGGAATGGGAACGACGTCGTCCAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGAGCGGCTGGGGTGGAGGATTCAGAAGCAGGACGAGGCGGCGGTGCAGAGCTTCTGTGACGAGACCGGAGTGAAGCGTCATGTCCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGGCAAGAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

270

Amino Acids

29.33

Weight (kDa)

6.65

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 61 - 113 1.8e-27 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 174
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 3 cut(s) 361, 417, 465
AccB7I CCANNNNNTGG 2 cut(s) 214, 235
AccBSI CCGCTC 1 cut(s) 682
AccI GTMKAC 1 cut(s) 509
AccII CGCG 4 cut(s) 233, 263, 287, 302
AclWI GGATC 2 cut(s) 21, 540
AcoI YGGCCR 1 cut(s) 258
AcvI CACGTG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 611
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 446, 467
AflIII ACRYGT 1 cut(s) 546
AhdI GACNNNNNGTC 1 cut(s) 547
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 2 cut(s) 255, 369
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AluBI AGCT 4 cut(s) 148, 358, 673, 729
AluI AGCT 4 cut(s) 148, 358, 673, 729
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 2 cut(s) 21, 540
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 6 cut(s) 126, 226, 258, 336, 373, 491
ApeKI GCWGC 4 cut(s) 116, 137, 484, 502
Asp700I GAANNNNTTC 1 cut(s) 626
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 4 cut(s) 235, 289, 299, 502
AspS9I GGNCC 2 cut(s) 373, 633
AsuC2I CCSGG 1 cut(s) 459
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 420
BanI GGYRCC 3 cut(s) 361, 417, 465
BbrPI CACGTG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 124, 128, 489, 496
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 2 cut(s) 197, 490
BciT130I CCWGG 2 cut(s) 257, 371
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 734
BfoI RGCGCY 1 cut(s) 503
BfuAI ACCTGC 1 cut(s) 174
BglI GCCNNNNNGGC 2 cut(s) 125, 134
BlpI GCTNAGC 1 cut(s) 144
Bme1390I CCNGG 3 cut(s) 257, 371, 459
Bme18I GGWCC 1 cut(s) 633
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 373, 633
BmiI GGNNCC 5 cut(s) 48, 268, 363, 419, 467
BmrFI CCNGG 3 cut(s) 257, 371, 459
BmsI GCATC 2 cut(s) 654, 765
BpmI CTGGAG 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 459
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 7 cut(s) 213, 261, 270, 370, 403, 513, 796
BsaWI WCCGGW 2 cut(s) 315, 743
BseBI CCWGG 2 cut(s) 257, 371
BseDI CCNNGG 7 cut(s) 213, 261, 270, 370, 403, 513, 796
BseGI GGATG 2 cut(s) 669, 780
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 4 cut(s) 35, 47, 96, 591
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 4 cut(s) 124, 128, 489, 496
BseYI CCCAGC 2 cut(s) 557, 685
BsgI GTGCAG 2 cut(s) 202, 743
Bsh1236I CGCG 4 cut(s) 233, 263, 287, 302
BshFI GGCC 6 cut(s) 128, 228, 260, 338, 375, 493
BshNI GGYRCC 3 cut(s) 361, 417, 465
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 4 cut(s) 199, 316, 459, 744
BslFI GGGAC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 6 cut(s) 128, 228, 260, 338, 375, 493
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 514
Bsp1286I GDGCHC 2 cut(s) 27, 420
Bsp143I GATC 2 cut(s) 13, 532
Bsp1720I GCTNAGC 1 cut(s) 144
BspANI GGCC 6 cut(s) 128, 228, 260, 338, 375, 493
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 4 cut(s) 233, 263, 287, 302
BspLI GGNNCC 5 cut(s) 48, 268, 363, 419, 467
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 21, 540
BspT107I GGYRCC 3 cut(s) 361, 417, 465
BspTNI GGTCTC 1 cut(s) 734
BsrBI CCGCTC 1 cut(s) 682
BssECI CCNNGG 7 cut(s) 213, 261, 270, 370, 403, 513, 796
BssMI GATC 2 cut(s) 13, 532
BssNI GRCGYC 1 cut(s) 611
Bst2UI CCWGG 2 cut(s) 257, 371
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 117, 617
BstACI GRCGYC 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 181, 498, 675
BstDEI CTNAG 1 cut(s) 144
BstDSI CCRYGG 3 cut(s) 213, 261, 403
BstF5I GGATG 2 cut(s) 669, 780
BstFNI CGCG 4 cut(s) 233, 263, 287, 302
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 4 cut(s) 235, 289, 299, 502
BstKTI GATC 2 cut(s) 16, 535
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 2 cut(s) 13, 532
BstNI CCWGG 2 cut(s) 257, 371
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 255, 369, 457
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 4 cut(s) 233, 263, 287, 302
BstV1I GCAGC 4 cut(s) 124, 128, 489, 496
BsuRI GGCC 6 cut(s) 128, 228, 260, 338, 375, 493
BtgI CCRYGG 3 cut(s) 213, 261, 403
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 669, 780
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 181, 498, 675
CfoI GCGC 4 cut(s) 235, 289, 299, 502
Cfr13I GGNCC 2 cut(s) 373, 633
Cfr42I CCGCGG 1 cut(s) 264
CseI GACGC 4 cut(s) 286, 293, 490, 743
Csp6I GTAC 2 cut(s) 445, 466
CviAII CATG 2 cut(s) 547, 758
CviQI GTAC 2 cut(s) 445, 466
DdeI CTNAG 1 cut(s) 144
DpnI GATC 2 cut(s) 15, 534
DpnII GATC 2 cut(s) 13, 532
DraIII CACNNNGTG 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 117, 617
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 2 cut(s) 117, 617
EciI GGCGGA 2 cut(s) 588, 692
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 633
Eco72I CACGTG 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 255, 369
EcoT22I ATGCAT 1 cut(s) 780
FaeI CATG 2 cut(s) 550, 761
FaiI YATR 4 cut(s) 189, 548, 759, 780
FaqI GGGAC 1 cut(s) 289
FatI CATG 2 cut(s) 546, 757
FauI CCCGC 4 cut(s) 256, 429, 434, 455
FblI GTMKAC 1 cut(s) 509
FokI GGATG 2 cut(s) 676, 787
GlaI GCGC 4 cut(s) 234, 288, 298, 501
GsaI CCCAGC 2 cut(s) 561, 689
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 6 cut(s) 128, 228, 260, 338, 375, 493
HapII CCGG 4 cut(s) 199, 316, 459, 744
HgaI GACGC 4 cut(s) 286, 293, 490, 743
HhaI GCGC 4 cut(s) 235, 289, 299, 502
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 2 cut(s) 550, 761
Hin6I GCGC 4 cut(s) 233, 287, 297, 500
HinP1I GCGC 4 cut(s) 233, 287, 297, 500
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 4 cut(s) 59, 96, 553, 697
HpaII CCGG 4 cut(s) 199, 316, 459, 744
Hpy166II GTNNAC 2 cut(s) 70, 510
Hpy188I TCNGA 2 cut(s) 101, 702
Hpy188III TCNNGA 4 cut(s) 17, 536, 631, 647
Hpy8I GTNNAC 2 cut(s) 70, 510
Hpy99I CGWCG 6 cut(s) 344, 484, 511, 545, 613, 616
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 3 cut(s) 378, 474, 611
HpyCH4V TGCA 3 cut(s) 183, 724, 778
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 3 cut(s) 378, 474, 611
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 2 cut(s) 550, 761
HspAI GCGC 4 cut(s) 233, 287, 297, 500
KpnI GGTACC 1 cut(s) 469
KspI CCGCGG 1 cut(s) 264
Kzo9I GATC 2 cut(s) 13, 532
LmnI GCTCC 6 cut(s) 22, 46, 266, 649, 670, 679
Lsp1109I GCAGC 4 cut(s) 124, 128, 489, 496
LweI GCATC 2 cut(s) 654, 765
MaeII ACGT 3 cut(s) 378, 474, 611
MaeIII GTNAC 4 cut(s) 53, 305, 475, 734
MalI GATC 2 cut(s) 15, 534
MbiI CCGCTC 1 cut(s) 682
MboI GATC 2 cut(s) 13, 532
MboII GAAGA 3 cut(s) 134, 214, 634
MhlI GDGCHC 2 cut(s) 27, 420
MluCI AATT 1 cut(s) 425
MlyI GAGTC 2 cut(s) 53, 105
Mph1103I ATGCAT 1 cut(s) 780
MroXI GAANNNNTTC 1 cut(s) 626
MspA1I CMGCKG 5 cut(s) 263, 358, 384, 496, 561
MspI CCGG 4 cut(s) 199, 316, 459, 744
MspR9I CCNGG 3 cut(s) 257, 371, 459
MvaI CCWGG 2 cut(s) 257, 371
MvnI CGCG 4 cut(s) 233, 263, 287, 302
NciI CCSGG 1 cut(s) 459
NdeII GATC 2 cut(s) 13, 532
NlaIII CATG 2 cut(s) 550, 761
NlaIV GGNNCC 5 cut(s) 48, 268, 363, 419, 467
NmeAIII GCCGAG 4 cut(s) 75, 295, 410, 777
NmuCI GTSAC 2 cut(s) 475, 734
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 553, 697
PflFI GACNNNGTC 1 cut(s) 613
PflMI CCANNNNNTGG 2 cut(s) 214, 235
PleI GAGTC 2 cut(s) 53, 104
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
PpsI GAGTC 2 cut(s) 53, 104
Ppu21I YACGTR 1 cut(s) 475
PscI ACATGT 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 255, 369
PspCI CACGTG 1 cut(s) 475
PspFI CCCAGC 2 cut(s) 557, 685
PspGI CCWGG 2 cut(s) 255, 369
PspN4I GGNNCC 5 cut(s) 48, 268, 363, 419, 467
PspPI GGNCC 2 cut(s) 373, 633
PsyI GACNNNGTC 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 446, 467
RsaNI GTAC 2 cut(s) 445, 466
SacII CCGCGG 1 cut(s) 264
SalI GTCGAC 1 cut(s) 508
Sau3AI GATC 2 cut(s) 13, 532
Sau96I GGNCC 2 cut(s) 373, 633
SchI GAGTC 2 cut(s) 53, 105
ScrFI CCNGG 3 cut(s) 257, 371, 459
SduI GDGCHC 2 cut(s) 27, 420
SfaNI GCATC 2 cut(s) 654, 765
Sfr303I CCGCGG 1 cut(s) 264
SgrBI CCGCGG 1 cut(s) 264
SinI GGWCC 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 1 cut(s) 425
StyD4I CCNGG 3 cut(s) 255, 369, 457
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 3 cut(s) 381, 477, 614
TaqI TCGA 2 cut(s) 509, 551
TasI AATT 1 cut(s) 425
TfiI GAWTC 2 cut(s) 553, 697
TseFI GTSAC 2 cut(s) 475, 734
TseI GCWGC 4 cut(s) 116, 137, 484, 502
Tsp45I GTSAC 2 cut(s) 475, 734
TspGWI ACGGA 3 cut(s) 93, 187, 545
Tth111I GACNNNGTC 1 cut(s) 613
Van91I CCANNNNNTGG 2 cut(s) 214, 235
VpaK11BI GGWCC 1 cut(s) 633
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 626
ZraI GACGTC 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.