Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007826.1

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

117571 .. 118344

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007826.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggaattcaacgaccagcacgaggaacaagatgaggaaatggagatgagcccgaccgcgccaacaccaccccgttacgacgcttccatgcccaaaatggggccctctagcggcggtggaggaggtggaggagaggacacagccagaaaaaggggtccctccatctcgaccgtctccactatcaggtacagagaatgccagaagaaccacgccgttaacatcggaggccatgccctcgatggttgctgcgagttccttgcggccggagaggagggcacgctcgacgccctcaaatgcgccgcgtgcaactgccaccgcaatttccaccggaaggagcccgcggaaggaggtggtggggccattcttccccaccaacacacccagcagccgttctcagcttactaccgccacccttatccgcccacgccatcgggttacctccacctgaccccggcgcagccgcatgggcctctggccttgcccgcggctgggtcgggcgggtcccacagcagggaggaaggggatgacgtgtcgaacccgagttctagcgggggcggcgggagtggagttgggctgttgaaaaagagatttaggaccaagtttacggcggagcagaaggagaagatggtggagtttgctgagaaggtggggtggcggattcagaagcacgacgaggcggcggtggaggagttctgcgccgacactggggtgaaacgacaggtgctcaaggtttggatgcacaacaataagcacactatcggtaagaagccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

257

Amino Acids

27.71

Weight (kDa)

6.7

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	59, 302, 341, 485
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	2 cut(s)	10, 580
AjiI	CACGTC	1 cut(s)	529
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	6 cut(s)	101, 226, 261, 357, 467, 474
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	246, 385, 457
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	4 cut(s)	61, 299, 457, 698
AspS9I	GGNCC	7 cut(s)	101, 102, 155, 357, 467, 501, 594
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	3 cut(s)	155, 501, 594
BaeGI	GKGCMC	2 cut(s)	105, 278
BanII	GRGCYC	3 cut(s)	53, 105, 339
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	726
BbvI	GCAGC	3 cut(s)	233, 397, 469
BccI	CCATC	4 cut(s)	170, 233, 436, 619
BceAI	ACGGC	3 cut(s)	197, 373, 621
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	108, 546
BglI	GCCNNNNNGGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	3 cut(s)	155, 501, 594
BmeT110I	CYCGRG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	7 cut(s)	101, 102, 155, 357, 467, 501, 594
BmiI	GGNNCC	8 cut(s)	102, 103, 156, 157, 336, 358, 502, 503
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	726
BmuI	ACTGGG	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	339, 450, 483
BsaWI	WCCGGW	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	709
BseDI	CCNNGG	3 cut(s)	339, 450, 483
BseGI	GGATG	2 cut(s)	529, 741
BseMII	CTCAG	2 cut(s)	408, 630
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	4 cut(s)	135, 144, 284, 701
BseSI	GKGCMC	2 cut(s)	105, 278
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	233, 397, 469
BseYI	CCCAGC	2 cut(s)	381, 488
Bsh1236I	CGCG	4 cut(s)	59, 302, 341, 485
Bsh1285I	CGRYCG	3 cut(s)	57, 171, 264
BshFI	GGCC	6 cut(s)	103, 228, 263, 359, 469, 476
BsiEI	CGRYCG	3 cut(s)	57, 171, 264
BsiHKAI	GWGCWC	1 cut(s)	726
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	264, 328, 452
BslFI	GGGAC	2 cut(s)	141, 487
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	141, 487
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	6 cut(s)	103, 228, 263, 359, 469, 476
BsoBI	CYCGRG	1 cut(s)	538
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	5 cut(s)	53, 105, 278, 339, 726
BspANI	GGCC	6 cut(s)	103, 228, 263, 359, 469, 476
BspCNI	CTCAG	2 cut(s)	407, 631
BspFNI	CGCG	4 cut(s)	59, 302, 341, 485
BspLI	GGNNCC	8 cut(s)	102, 103, 156, 157, 336, 358, 502, 503
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	3 cut(s)	339, 450, 483
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	278, 304, 339, 483
BstDEI	CTNAG	2 cut(s)	394, 639
BstDSI	CCRYGG	2 cut(s)	339, 483
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	529, 741
BstFNI	CGCG	4 cut(s)	59, 302, 341, 485
BstHHI	GCGC	4 cut(s)	61, 299, 457, 698
BstMAI	GTCTC	1 cut(s)	178
BstMCI	CGRYCG	3 cut(s)	57, 171, 264
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 466, 482, 555
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	450
BstSLI	GKGCMC	2 cut(s)	105, 278
BstUI	CGCG	4 cut(s)	59, 302, 341, 485
BstV1I	GCAGC	3 cut(s)	233, 397, 469
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	103, 228, 263, 359, 469, 476
BtgI	CCRYGG	2 cut(s)	339, 483
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	529, 741
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	4 cut(s)	278, 304, 339, 483
CfoI	GCGC	4 cut(s)	61, 299, 457, 698
Cfr13I	GGNCC	7 cut(s)	101, 102, 155, 357, 467, 501, 594
Cfr42I	CCGCGG	2 cut(s)	342, 486
CseI	GACGC	2 cut(s)	89, 293
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	88, 230, 464
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	394, 639
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
EciI	GGCGGA	3 cut(s)	408, 623, 670
EclXI	CGGCCG	1 cut(s)	261
Eco24I	GRGCYC	3 cut(s)	53, 105, 339
Eco47I	GGWCC	3 cut(s)	155, 501, 594
Eco52I	CGGCCG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	434
EcoO109I	RGGNCCY	4 cut(s)	101, 102, 155, 501
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	3 cut(s)	53, 105, 339
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	3 cut(s)	91, 233, 467
FaiI	YATR	3 cut(s)	89, 231, 465
FaqI	GGGAC	2 cut(s)	141, 487
FatI	CATG	3 cut(s)	87, 229, 463
FauI	CCCGC	5 cut(s)	346, 490, 491, 542, 551
FokI	GGATG	2 cut(s)	536, 748
FriOI	GRGCYC	3 cut(s)	53, 105, 339
FspBI	CTAG	2 cut(s)	108, 546
GlaI	GCGC	4 cut(s)	60, 298, 456, 697
GsaI	CCCAGC	2 cut(s)	385, 492
HaeIII	GGCC	6 cut(s)	103, 228, 263, 359, 469, 476
HapII	CCGG	3 cut(s)	264, 328, 452
HgaI	GACGC	2 cut(s)	89, 293
HhaI	GCGC	4 cut(s)	61, 299, 457, 698
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	91, 233, 467
Hin6I	GCGC	4 cut(s)	59, 297, 455, 696
HinP1I	GCGC	4 cut(s)	59, 297, 455, 696
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	658
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	264, 328, 452
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	2 cut(s)	217, 603
Hpy188I	TCNGA	2 cut(s)	224, 663
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	217, 603
Hpy99I	CGWCG	3 cut(s)	83, 287, 674
HpyAV	CCTTC	5 cut(s)	325, 338, 512, 610, 637
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	2 cut(s)	306, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 466, 482, 555
HpyF3I	CTNAG	2 cut(s)	394, 639
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	91, 233, 467
HspAI	GCGC	4 cut(s)	59, 297, 455, 696
KflI	GGGWCCC	2 cut(s)	155, 501
KspAI	GTTAAC	1 cut(s)	217
KspI	CCGCGG	2 cut(s)	342, 486
LmnI	GCTCC	2 cut(s)	334, 610
Lsp1109I	GCAGC	3 cut(s)	233, 397, 469
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	2 cut(s)	108, 546
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	74, 434
MboII	GAAGA	3 cut(s)	214, 356, 634
MhlI	GDGCHC	5 cut(s)	53, 105, 278, 339, 726
MluCI	AATT	2 cut(s)	5, 319
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	2 cut(s)	341, 485
MspI	CCGG	3 cut(s)	264, 328, 452
MspR9I	CCNGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	200
MvnI	CGCG	4 cut(s)	59, 302, 341, 485
MwoI	GCNNNNNNNGC	4 cut(s)	303, 466, 482, 555
NciI	CCSGG	1 cut(s)	452
NlaIII	CATG	3 cut(s)	91, 233, 467
NlaIV	GGNNCC	8 cut(s)	102, 103, 156, 157, 336, 358, 502, 503
OliI	CACNNNNGTG	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	658
PpuMI	RGGWCCY	2 cut(s)	155, 501
Psp5II	RGGWCCY	2 cut(s)	155, 501
PspEI	GGTNACC	1 cut(s)	434
PspFI	CCCAGC	2 cut(s)	381, 488
PspN4I	GGNNCC	8 cut(s)	102, 103, 156, 157, 336, 358, 502, 503
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	7 cut(s)	101, 102, 155, 357, 467, 501, 594
PspPPI	RGGWCCY	2 cut(s)	155, 501
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	707
SacII	CCGCGG	2 cut(s)	342, 486
SaqAI	TTAA	1 cut(s)	216
Sau96I	GGNCC	7 cut(s)	101, 102, 155, 357, 467, 501, 594
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	5 cut(s)	53, 105, 278, 339, 726
SfaNI	GCATC	1 cut(s)	726
Sfr303I	CCGCGG	2 cut(s)	342, 486
SgrBI	CCGCGG	2 cut(s)	342, 486
SinI	GGWCC	3 cut(s)	155, 501, 594
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	2 cut(s)	5, 319
SspMI	CTAG	2 cut(s)	108, 546
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	4 cut(s)	167, 237, 282, 533
TasI	AATT	2 cut(s)	5, 319
TauI	GCSGC	7 cut(s)	114, 263, 302, 463, 488, 558, 680
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	709
TseI	GCWGC	3 cut(s)	246, 385, 457
TspRI	CASTG	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	155, 501, 594
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 236
XspI	CTAG	2 cut(s)	108, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.