RLG00000017943

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002915
Physical Location & Seq
Reverse (-)
23378636 .. 23381335
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017943

Sequence Viewer

Length: 846 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACGGAGGAGGAGGAGGTGGTGGCAGAGTCAGAATGGCGAGTTCAGCAGCCGAAGCGGCTGCTGCGGCCGCTTCGGCTGCGGCTCAGCTACAACAACAACAGCAGCAGACAAGGAACGCGTGCAGGTATAGGGAGTGCTTGAAGAACCACGCCGTGGGGATTGGAGGGCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCCGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAAGGAGATGGACGAGCCGTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACCACAACCACCACGGGGGTTTTGGGCACCCGCAATTCTCGGCGACTGGCGGGTACTACCGCACTCCCAGCGGGTACCTCCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACCTCGGGCGGGGGAGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGTGGCGGCGGAGGAGGGAGTGGGTTTGGAATGGGAATGGGAACGACGTCGTCCAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGAGCGGCTGGGGTGGAGGATTCAGAAGCAGGACGAGGCGGCGGTGCAGAGCTTCTGCAACGAGACCGGAGTGAAGCGTCATGTCCTCAAGGTGCAGGGAGTCTCCCTGAAAATGGAGAGGCATGCTGGTCGTGGGTCATTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

282

Amino Acids

30.19

Weight (kDa)

6.54

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 65 - 117 4.7e-28 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 486
AccB1I GGYRCC 3 cut(s) 373, 438, 486
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 703
AccI GTMKAC 1 cut(s) 530
AccII CGCG 5 cut(s) 191, 245, 275, 299, 314
AclWI GGATC 2 cut(s) 21, 561
AcoI YGGCCR 2 cut(s) 138, 270
AcvI CACGTG 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 632
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 3 cut(s) 362, 467, 488
AfiI CCNNNNNNNGG 9 cut(s) 226, 274, 343, 383, 427, 540, 584, 645, 811
AflIII ACRYGT 2 cut(s) 189, 567
AgsI TTSAA 1 cut(s) 214
AhdI GACNNNNNGTC 1 cut(s) 568
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 2 cut(s) 267, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 4 cut(s) 160, 370, 694, 750
AluI AGCT 4 cut(s) 160, 370, 694, 750
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 755, 805
AlwI GGATC 2 cut(s) 21, 561
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 4 cut(s) 138, 270, 385, 512
ApeKI GCWGC 7 cut(s) 119, 131, 134, 149, 175, 505, 523
Asp700I GAANNNNTTC 1 cut(s) 647
Asp718I GGTACC 1 cut(s) 486
AspLEI GCGC 4 cut(s) 247, 301, 311, 523
AspS9I GGNCC 2 cut(s) 385, 654
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 1 cut(s) 654
BaeGI GKGCMC 2 cut(s) 243, 441
BanI GGYRCC 3 cut(s) 373, 438, 486
BbrPI CACGTG 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 7 cut(s) 118, 121, 131, 136, 187, 510, 517
BccI CCATC 3 cut(s) 31, 37, 343
BceAI ACGGC 3 cut(s) 209, 343, 511
BcgI CGANNNNNNTGC 4 cut(s) 113, 147, 809, 843
BciT130I CCWGG 2 cut(s) 269, 383
BcoDI GTCTC 2 cut(s) 755, 805
BfaI CTAG 1 cut(s) 844
BfoI RGCGCY 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 186
BglI GCCNNNNNGGC 2 cut(s) 128, 146
BlpI GCTNAGC 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 269, 383
Bme18I GGWCC 1 cut(s) 654
BmeRI GACNNNNNGTC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 385, 654
BmiI GGNNCC 5 cut(s) 48, 280, 375, 440, 488
BmrFI CCNGG 2 cut(s) 269, 383
BmsI GCATC 1 cut(s) 675
BpmI CTGGAG 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 496
BsaHI GRCGYC 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 755
BsaJI CCNNGG 6 cut(s) 225, 273, 282, 382, 424, 534
BsaWI WCCGGW 1 cut(s) 764
Bsc4I CCNNNNNNNGG 9 cut(s) 226, 274, 343, 383, 427, 540, 584, 645, 811
Bse1I ACTGG 1 cut(s) 463
BseBI CCWGG 2 cut(s) 269, 383
BseDI CCNNGG 6 cut(s) 225, 273, 282, 382, 424, 534
BseGI GGATG 1 cut(s) 690
BseLI CCNNNNNNNGG 9 cut(s) 226, 274, 343, 383, 427, 540, 584, 645, 811
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 6 cut(s) 35, 47, 93, 96, 99, 612
BseSI GKGCMC 2 cut(s) 243, 441
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 7 cut(s) 118, 121, 131, 136, 187, 510, 517
BseYI CCCAGC 3 cut(s) 479, 578, 706
BsgI GTGCAG 3 cut(s) 214, 764, 812
Bsh1236I CGCG 5 cut(s) 191, 245, 275, 299, 314
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 140, 272, 387, 514
BshNI GGYRCC 3 cut(s) 373, 438, 486
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 1 cut(s) 765
BsiWI CGTACG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 9 cut(s) 226, 274, 343, 383, 427, 540, 584, 645, 811
BsmAI GTCTC 2 cut(s) 755, 805
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 4 cut(s) 140, 272, 387, 514
Bso31I GGTCTC 1 cut(s) 755
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 3 cut(s) 27, 243, 441
Bsp143I GATC 2 cut(s) 13, 553
Bsp1720I GCTNAGC 1 cut(s) 156
BspANI GGCC 4 cut(s) 140, 272, 387, 514
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 5 cut(s) 191, 245, 275, 299, 314
BspLI GGNNCC 5 cut(s) 48, 280, 375, 440, 488
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 2 cut(s) 21, 561
BspT107I GGYRCC 3 cut(s) 373, 438, 486
BspTNI GGTCTC 1 cut(s) 755
BsrBI CCGCTC 1 cut(s) 703
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 6 cut(s) 225, 273, 282, 382, 424, 534
BssMI GATC 2 cut(s) 13, 553
BssNI GRCGYC 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 269, 383
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 638
BstACI GRCGYC 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 5 cut(s) 193, 243, 519, 696, 822
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 3 cut(s) 225, 273, 424
BstF5I GGATG 1 cut(s) 690
BstFNI CGCG 5 cut(s) 191, 245, 275, 299, 314
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 4 cut(s) 247, 301, 311, 523
BstKTI GATC 2 cut(s) 16, 556
BstMAI GTCTC 2 cut(s) 755, 805
BstMBI GATC 2 cut(s) 13, 553
BstMCI CGRYCG 1 cut(s) 141
BstNI CCWGG 2 cut(s) 269, 383
BstNSI RCATGY 2 cut(s) 571, 824
BstSCI CCNGG 2 cut(s) 267, 381
BstSLI GKGCMC 2 cut(s) 243, 441
BstUI CGCG 5 cut(s) 191, 245, 275, 299, 314
BstV1I GCAGC 7 cut(s) 118, 121, 131, 136, 187, 510, 517
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 4 cut(s) 140, 272, 387, 514
BtgI CCRYGG 3 cut(s) 225, 273, 424
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 690
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 5 cut(s) 193, 243, 519, 696, 822
CciNI GCGGCCGC 1 cut(s) 138
CfoI GCGC 4 cut(s) 247, 301, 311, 523
Cfr13I GGNCC 2 cut(s) 385, 654
Cfr42I CCGCGG 1 cut(s) 276
CseI GACGC 4 cut(s) 298, 305, 511, 764
Csp6I GTAC 3 cut(s) 361, 466, 487
CviAII CATG 3 cut(s) 568, 779, 821
CviQI GTAC 3 cut(s) 361, 466, 487
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 15, 555
DpnII GATC 2 cut(s) 13, 553
DraIII CACNNNGTG 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 568
EaeI YGGCCR 2 cut(s) 138, 270
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 638
Eam1105I GACNNNNNGTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 638
EciI GGCGGA 2 cut(s) 609, 713
EclXI CGGCCG 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 755
Eco47I GGWCC 1 cut(s) 654
Eco52I CGGCCG 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 267, 381
FaeI CATG 3 cut(s) 571, 782, 824
FaiI YATR 4 cut(s) 201, 569, 780, 822
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 567, 778, 820
FauI CCCGC 5 cut(s) 268, 450, 455, 476, 533
FblI GTMKAC 1 cut(s) 530
FokI GGATG 1 cut(s) 697
FspBI CTAG 1 cut(s) 844
GlaI GCGC 4 cut(s) 246, 300, 310, 522
GsaI CCCAGC 3 cut(s) 483, 582, 710
GsuI CTGGAG 1 cut(s) 710
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 4 cut(s) 140, 272, 387, 514
HapII CCGG 1 cut(s) 765
HgaI GACGC 4 cut(s) 298, 305, 511, 764
HhaI GCGC 4 cut(s) 247, 301, 311, 523
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 3 cut(s) 571, 782, 824
Hin6I GCGC 4 cut(s) 245, 299, 309, 521
HinP1I GCGC 4 cut(s) 245, 299, 309, 521
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HinfI GANTC 5 cut(s) 59, 99, 574, 718, 798
HpaII CCGG 1 cut(s) 765
Hpy166II GTNNAC 2 cut(s) 70, 531
Hpy188I TCNGA 2 cut(s) 104, 723
Hpy188III TCNNGA 4 cut(s) 17, 557, 652, 668
Hpy8I GTNNAC 2 cut(s) 70, 531
Hpy99I CGWCG 5 cut(s) 505, 532, 566, 634, 637
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 3 cut(s) 390, 495, 632
HpyCH4V TGCA 4 cut(s) 195, 745, 756, 793
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 3 cut(s) 390, 495, 632
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 3 cut(s) 571, 782, 824
HspAI GCGC 4 cut(s) 245, 299, 309, 521
KpnI GGTACC 1 cut(s) 490
KspI CCGCGG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 13, 553
LmnI GCTCC 6 cut(s) 22, 46, 278, 670, 691, 700
Lsp1109I GCAGC 7 cut(s) 118, 121, 131, 136, 187, 510, 517
LweI GCATC 1 cut(s) 675
MaeI CTAG 1 cut(s) 844
MaeII ACGT 3 cut(s) 390, 495, 632
MaeIII GTNAC 3 cut(s) 53, 317, 496
MalI GATC 2 cut(s) 15, 555
MbiI CCGCTC 1 cut(s) 703
MboI GATC 2 cut(s) 13, 553
MboII GAAGA 2 cut(s) 226, 655
MhlI GDGCHC 3 cut(s) 27, 243, 441
MluCI AATT 1 cut(s) 446
MluI ACGCGT 1 cut(s) 189
MlyI GAGTC 3 cut(s) 53, 108, 807
MroXI GAANNNNTTC 1 cut(s) 647
MspA1I CMGCKG 6 cut(s) 275, 370, 396, 483, 517, 582
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 2 cut(s) 269, 383
MvaI CCWGG 2 cut(s) 269, 383
MvnI CGCG 5 cut(s) 191, 245, 275, 299, 314
NdeII GATC 2 cut(s) 13, 553
NlaIII CATG 3 cut(s) 571, 782, 824
NlaIV GGNNCC 5 cut(s) 48, 280, 375, 440, 488
NmeAIII GCCGAG 3 cut(s) 75, 307, 431
NmuCI GTSAC 1 cut(s) 496
NotI GCGGCCGC 1 cut(s) 138
NspI RCATGY 2 cut(s) 571, 824
PaeI GCATGC 1 cut(s) 824
PciI ACATGT 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 2 cut(s) 574, 718
Pfl23II CGTACG 1 cut(s) 360
PflFI GACNNNGTC 1 cut(s) 634
PflMI CCANNNNNTGG 1 cut(s) 226
PleI GAGTC 3 cut(s) 53, 107, 806
PmaCI CACGTG 1 cut(s) 496
PmlI CACGTG 1 cut(s) 496
PpsI GAGTC 3 cut(s) 53, 107, 806
Ppu21I YACGTR 1 cut(s) 496
PscI ACATGT 1 cut(s) 567
Psp6I CCWGG 2 cut(s) 267, 381
PspCI CACGTG 1 cut(s) 496
PspFI CCCAGC 3 cut(s) 479, 578, 706
PspGI CCWGG 2 cut(s) 267, 381
PspLI CGTACG 1 cut(s) 360
PspN4I GGNNCC 5 cut(s) 48, 280, 375, 440, 488
PspPI GGNCC 2 cut(s) 385, 654
PsyI GACNNNGTC 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 362, 467, 488
RsaNI GTAC 3 cut(s) 361, 466, 487
SacII CCGCGG 1 cut(s) 276
SalI GTCGAC 1 cut(s) 529
Sau3AI GATC 2 cut(s) 13, 553
Sau96I GGNCC 2 cut(s) 385, 654
SchI GAGTC 3 cut(s) 53, 108, 807
ScrFI CCNGG 2 cut(s) 269, 383
SduI GDGCHC 3 cut(s) 27, 243, 441
SfaNI GCATC 1 cut(s) 675
Sfr303I CCGCGG 1 cut(s) 276
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SphI GCATGC 1 cut(s) 824
Sse9I AATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 844
StyD4I CCNGG 2 cut(s) 267, 381
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 3 cut(s) 393, 498, 635
TaqI TCGA 2 cut(s) 530, 572
TasI AATT 1 cut(s) 446
TfiI GAWTC 2 cut(s) 574, 718
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 7 cut(s) 119, 131, 134, 149, 175, 505, 523
Tsp45I GTSAC 1 cut(s) 496
TspGWI ACGGA 2 cut(s) 90, 566
Tth111I GACNNNGTC 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 654
XceI RCATGY 2 cut(s) 571, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 844
ZraI GACGTC 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.