Rh7AG462100

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002915
Physical Location & Seq
Forward (+)
63671125 .. 63674990
3866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG462100.1

Sequence Viewer

Length: 774 bp
ATGGAATTCAACAACCAGCACGAGGAACAAGATGAGGAAATGGAGATGAGCCCGACGGCGCCAACACCACCCCGTTACGACGCTTCCATGCCCAAAATGGGGCCCTCTAGCGGCGGTGGAGGAGGTGGAGGAGAGGCCACAGCCAGAAAAAGGGGTCCCTCCATCTCGACCGTCTCCACTATCAGGTACAGAGAATGCCAGAAGAACCACGCCGTTAACATCGGAGGCCATGCCCTCGATGGTTGCTGCGAGTTCCTTGCGGCCGGAGAGGAGGGCACGCTCGACGCCCTCAAATGCGCCGCGTGCAACTGCCACCGCAATTTCCACCGGAAGGAGCCCGCGGAAGGAGGTGGTGGGGCCATTCTTCCCCACCAACACACCCAGCAGCCGTTCTCAGCTTACTACCGCCACCCTTATCCGCCCACGCCATCGGGTTACCTCCACCTGACCCCGGCGCAGCCGCATAGACCTCTGGCCTTGCCCGCGGCTGGGTCGGGCGGGTCGCACAGCAGGGAGGAAGGGGATGACGTGTCGAACCCGAGTTCTAGCGGGGGCGGCGGGAGTGGAGTTGGGCTGTTGAAAAAGAGATTTAGGACCAAGTTTACGGCGGAGCAGAAGGAGAAGATGGTGGAGTTTGCTGAGAAGGTGGGGTGGCGGATTCAGAAGCACGACGAGGCGGCGGTGGAGGAGTTCTGCGCCGACAGTGGGGTGAAACGACAGGTGCTCAAGGTTTGGATGCACAACAACAAGCACACTATCGGTAAGAAGCCCTAA

Protein Analysis

257

Amino Acids

27.75

Weight (kDa)

7.7

Isoelectric Point (pI)

60.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 61 - 113 3.9e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AccII CGCG 3 cut(s) 302, 341, 485
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 59, 285
AfaI GTAC 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 2 cut(s) 10, 580
AjiI CACGTC 1 cut(s) 529
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 6 cut(s) 101, 135, 226, 261, 357, 474
ApaI GGGCCC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 246, 385, 457
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 4 cut(s) 61, 299, 457, 698
AspS9I GGNCC 5 cut(s) 101, 102, 155, 357, 594
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 721
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 2 cut(s) 155, 594
BaeGI GKGCMC 2 cut(s) 105, 278
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 3 cut(s) 53, 105, 339
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 726
BbvI GCAGC 3 cut(s) 233, 397, 469
BccI CCATC 4 cut(s) 170, 233, 436, 619
BceAI ACGGC 4 cut(s) 72, 197, 373, 621
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 2 cut(s) 108, 546
BfoI RGCGCY 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 2 cut(s) 155, 594
BmeT110I CYCGRG 1 cut(s) 538
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 5 cut(s) 101, 102, 155, 357, 594
BmiI GGNNCC 7 cut(s) 60, 102, 103, 156, 157, 336, 358
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 59, 285
BsaJI CCNNGG 3 cut(s) 339, 450, 483
BsaWI WCCGGW 1 cut(s) 327
BseDI CCNNGG 3 cut(s) 339, 450, 483
BseGI GGATG 2 cut(s) 529, 741
BseMII CTCAG 2 cut(s) 408, 630
BseRI GAGGAG 4 cut(s) 135, 144, 284, 701
BseSI GKGCMC 2 cut(s) 105, 278
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 233, 397, 469
BseYI CCCAGC 2 cut(s) 381, 488
Bsh1236I CGCG 3 cut(s) 302, 341, 485
Bsh1285I CGRYCG 2 cut(s) 171, 264
BshFI GGCC 6 cut(s) 103, 137, 228, 263, 359, 476
BshNI GGYRCC 1 cut(s) 58
BsiEI CGRYCG 2 cut(s) 171, 264
BsiHKAI GWGCWC 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 3 cut(s) 264, 328, 452
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 6 cut(s) 103, 137, 228, 263, 359, 476
BsoBI CYCGRG 1 cut(s) 538
Bsp120I GGGCCC 1 cut(s) 101
Bsp1286I GDGCHC 5 cut(s) 53, 105, 278, 339, 726
BspANI GGCC 6 cut(s) 103, 137, 228, 263, 359, 476
BspCNI CTCAG 2 cut(s) 407, 631
BspFNI CGCG 3 cut(s) 302, 341, 485
BspLI GGNNCC 7 cut(s) 60, 102, 103, 156, 157, 336, 358
BspT107I GGYRCC 1 cut(s) 58
BssECI CCNNGG 3 cut(s) 339, 450, 483
BssNI GRCGYC 2 cut(s) 59, 285
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 172, 704
BstACI GRCGYC 2 cut(s) 59, 285
BstC8I GCNNGC 4 cut(s) 278, 304, 339, 483
BstDEI CTNAG 2 cut(s) 394, 639
BstDSI CCRYGG 2 cut(s) 339, 483
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 2 cut(s) 529, 741
BstFNI CGCG 3 cut(s) 302, 341, 485
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 4 cut(s) 61, 299, 457, 698
BstMAI GTCTC 1 cut(s) 178
BstMCI CGRYCG 2 cut(s) 171, 264
BstMWI GCNNNNNNNGC 3 cut(s) 303, 482, 555
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 450
BstSLI GKGCMC 2 cut(s) 105, 278
BstUI CGCG 3 cut(s) 302, 341, 485
BstV1I GCAGC 3 cut(s) 233, 397, 469
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 6 cut(s) 103, 137, 228, 263, 359, 476
BtgI CCRYGG 2 cut(s) 339, 483
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 2 cut(s) 529, 741
BtsIMutI CAGTG 1 cut(s) 709
Cac8I GCNNGC 4 cut(s) 278, 304, 339, 483
CfoI GCGC 4 cut(s) 61, 299, 457, 698
Cfr13I GGNCC 5 cut(s) 101, 102, 155, 357, 594
Cfr42I CCGCGG 2 cut(s) 342, 486
CseI GACGC 2 cut(s) 89, 293
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 88, 230
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 394, 639
DinI GGCGCC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
EciI GGCGGA 3 cut(s) 408, 623, 670
EclXI CGGCCG 1 cut(s) 261
Eco24I GRGCYC 3 cut(s) 53, 105, 339
Eco47I GGWCC 2 cut(s) 155, 594
Eco52I CGGCCG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 538
Eco91I GGTNACC 1 cut(s) 434
EcoO109I RGGNCCY 3 cut(s) 101, 102, 155
EcoO65I GGTNACC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 5
EcoT38I GRGCYC 3 cut(s) 53, 105, 339
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 2 cut(s) 91, 233
FaiI YATR 3 cut(s) 89, 231, 465
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 87, 229
FauI CCCGC 5 cut(s) 346, 490, 491, 542, 551
FokI GGATG 2 cut(s) 536, 748
FriOI GRGCYC 3 cut(s) 53, 105, 339
FspBI CTAG 2 cut(s) 108, 546
GlaI GCGC 4 cut(s) 60, 298, 456, 697
GsaI CCCAGC 2 cut(s) 385, 492
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 6 cut(s) 103, 137, 228, 263, 359, 476
HapII CCGG 3 cut(s) 264, 328, 452
HgaI GACGC 2 cut(s) 89, 293
HhaI GCGC 4 cut(s) 61, 299, 457, 698
Hin1I GRCGYC 2 cut(s) 59, 285
Hin1II CATG 2 cut(s) 91, 233
Hin6I GCGC 4 cut(s) 59, 297, 455, 696
HinP1I GCGC 4 cut(s) 59, 297, 455, 696
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 658
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 3 cut(s) 264, 328, 452
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 2 cut(s) 217, 603
Hpy188I TCNGA 2 cut(s) 224, 663
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 217, 603
Hpy99I CGWCG 4 cut(s) 58, 83, 287, 674
HpyAV CCTTC 5 cut(s) 325, 338, 512, 610, 637
HpyCH4III ACNGT 2 cut(s) 172, 704
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 306, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 303, 482, 555
HpyF3I CTNAG 2 cut(s) 394, 639
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 2 cut(s) 59, 285
Hsp92II CATG 2 cut(s) 91, 233
HspAI GCGC 4 cut(s) 59, 297, 455, 696
KasI GGCGCC 1 cut(s) 58
KflI GGGWCCC 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 217
KspI CCGCGG 2 cut(s) 342, 486
LmnI GCTCC 2 cut(s) 334, 610
Lsp1109I GCAGC 3 cut(s) 233, 397, 469
LweI GCATC 1 cut(s) 726
MaeI CTAG 2 cut(s) 108, 546
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 74, 434
MboII GAAGA 3 cut(s) 214, 356, 634
MhlI GDGCHC 5 cut(s) 53, 105, 278, 339, 726
MluCI AATT 2 cut(s) 5, 319
Mly113I GGCGCC 1 cut(s) 59
MseI TTAA 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 341, 485
MspI CCGG 3 cut(s) 264, 328, 452
MspR9I CCNGG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 200
MvnI CGCG 3 cut(s) 302, 341, 485
MwoI GCNNNNNNNGC 3 cut(s) 303, 482, 555
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 1 cut(s) 452
NlaIII CATG 2 cut(s) 91, 233
NlaIV GGNNCC 7 cut(s) 60, 102, 103, 156, 157, 336, 358
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 658
PluTI GGCGCC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 434
PspFI CCCAGC 2 cut(s) 381, 488
PspN4I GGNNCC 7 cut(s) 60, 102, 103, 156, 157, 336, 358
PspOMI GGGCCC 1 cut(s) 101
PspPI GGNCC 5 cut(s) 101, 102, 155, 357, 594
PspPPI RGGWCCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SacII CCGCGG 2 cut(s) 342, 486
SaqAI TTAA 1 cut(s) 216
Sau96I GGNCC 5 cut(s) 101, 102, 155, 357, 594
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 5 cut(s) 53, 105, 278, 339, 726
SfaNI GCATC 1 cut(s) 726
SfoI GGCGCC 1 cut(s) 60
Sfr303I CCGCGG 2 cut(s) 342, 486
SgrBI CCGCGG 2 cut(s) 342, 486
SinI GGWCC 2 cut(s) 155, 594
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 2 cut(s) 5, 319
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 2 cut(s) 108, 546
StyD4I CCNGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 172, 704
TaiI ACGT 1 cut(s) 531
TaqI TCGA 4 cut(s) 167, 237, 282, 533
TasI AATT 2 cut(s) 5, 319
TauI GCSGC 7 cut(s) 114, 263, 302, 463, 488, 558, 680
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 709
TseI GCWGC 3 cut(s) 246, 385, 457
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 155, 594
XapI RAATTY 1 cut(s) 5
XcmI CCANNNNNNNNNTGG 2 cut(s) 94, 236
XspI CTAG 2 cut(s) 108, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.