Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

7071899 .. 7074996

Gene Structure 3098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAATTCAACGACCAGCACGAGGAACAAGATGAGGAAATGGAGATGAGCCCGACGGCGCCAACACCACCCCGTTACGACGCTTCCATGCCCAAAATGGGGCCCCTAGCGGAGGTGGAGGAGGTGGAGGAGAGGCCACAGCCAGAAAAAGGGGTTCCTCCATCTCGACCGTCTCCACTATCAGGCCATGCCCTCGATGGTTGCTGCGAGTTCCTTGCGGCCGGAGAGGAGGGCACGCTCGACGCCCTCAAATGCGCCGCGTGCAACTGCCACCGCAATTTCCACCGGAAGGAGCCCGCGGAAGGAGGTGGTGGGGCCATTCTTCCCCACCAACACACCCAGCAGCCGTTCTCGGCTTACTACCGCCACCCTTATCCGCCCACGCCATCGGGTTACCTCCACCTGACCCCGGCGCAGCCGCATAGGCCTCTGGCCTTGCCAGCGGCTGGGTCGGGCGGGTCCCACAGCAGGGAGGAAGGGGATGACGTGTCGAACCCGAGTTCTAGCGGGGGCGGCGGGAGTGGAGTTGGGCTGTTGAAAAAGAGATTTAGGACCAAGTTTACGGCGGAGCAGAAGGAGAAGATGGTGGAGTTTGCTGAGAAGGACCTTTCGTCTCCGGACTCTCCGCCGCCGCACCATCCGATCTCGGCCCGCATCCAATTGCTCAATCGCCCGTCTTCACCGGTGCACCGTCGAGTAAGCTTTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

237

Amino Acids

25.73

Weight (kDa)

6.0

Isoelectric Point (pI)

74.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	61 - 99	3e-19	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccII	CGCG	2 cut(s)	260, 299
AccIII	TCCGGA	1 cut(s)	616
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	59, 243
AflIII	ACRYGT	1 cut(s)	486
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	2 cut(s)	10, 538
AhdI	GACNNNNNGTC	1 cut(s)	610
AjiI	CACGTC	1 cut(s)	487
AluBI	AGCT	1 cut(s)	702
AluI	AGCT	1 cut(s)	702
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	2 cut(s)	177, 618
Alw44I	GTGCAC	1 cut(s)	686
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	496
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	8 cut(s)	101, 134, 184, 219, 315, 425, 432, 648
ApaI	GGGCCC	1 cut(s)	105
ApaLI	GTGCAC	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	204, 343, 415
ApoI	RAATTY	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	682
AspLEI	GCGC	3 cut(s)	61, 257, 415
AspS9I	GGNCC	7 cut(s)	101, 102, 315, 459, 552, 604, 649
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	672
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	3 cut(s)	459, 552, 604
BaeGI	GKGCMC	3 cut(s)	105, 236, 690
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	3 cut(s)	53, 105, 297
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	3 cut(s)	191, 355, 427
BccI	CCATC	5 cut(s)	169, 191, 394, 577, 645
BceAI	ACGGC	3 cut(s)	72, 331, 579
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	177, 618
BfaI	CTAG	2 cut(s)	107, 504
BfoI	RGCGCY	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	3 cut(s)	459, 552, 604
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	496
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	7 cut(s)	101, 102, 315, 459, 552, 604, 649
BmiI	GGNNCC	9 cut(s)	60, 102, 103, 104, 156, 294, 316, 460, 461
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	59, 243
BsaJI	CCNNGG	2 cut(s)	297, 408
BsaWI	WCCGGW	3 cut(s)	285, 616, 682
Bse118I	RCCGGY	1 cut(s)	682
BseAI	TCCGGA	1 cut(s)	616
BseDI	CCNNGG	2 cut(s)	297, 408
BseGI	GGATG	3 cut(s)	487, 637, 654
BseMII	CTCAG	1 cut(s)	588
BseRI	GAGGAG	3 cut(s)	134, 143, 242
BseSI	GKGCMC	3 cut(s)	105, 236, 690
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	191, 355, 427
BseYI	CCCAGC	2 cut(s)	339, 446
Bsh1236I	CGCG	2 cut(s)	260, 299
Bsh1285I	CGRYCG	2 cut(s)	170, 222
BshFI	GGCC	8 cut(s)	103, 136, 186, 221, 317, 427, 434, 650
BshNI	GGYRCC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	682
BsiEI	CGRYCG	2 cut(s)	170, 222
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	5 cut(s)	222, 286, 410, 617, 683
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	177, 618
BsmBI	CGTCTC	2 cut(s)	177, 618
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	8 cut(s)	103, 136, 186, 221, 317, 427, 434, 650
BsoBI	CYCGRG	1 cut(s)	496
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	5 cut(s)	53, 105, 236, 297, 690
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	642
BspANI	GGCC	8 cut(s)	103, 136, 186, 221, 317, 427, 434, 650
BspCNI	CTCAG	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	616
BspFNI	CGCG	2 cut(s)	260, 299
BspLI	GGNNCC	9 cut(s)	60, 102, 103, 104, 156, 294, 316, 460, 461
BspT107I	GGYRCC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	2 cut(s)	297, 408
BssMI	GATC	1 cut(s)	642
BssNI	GRCGYC	2 cut(s)	59, 243
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	171, 692
BstACI	GRCGYC	2 cut(s)	59, 243
BstC8I	GCNNGC	5 cut(s)	236, 262, 297, 441, 652
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	1 cut(s)	297
BstEII	GGTNACC	1 cut(s)	392
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	3 cut(s)	487, 637, 654
BstFNI	CGCG	2 cut(s)	260, 299
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 257, 415
BstKTI	GATC	1 cut(s)	645
BstMAI	GTCTC	2 cut(s)	177, 618
BstMBI	GATC	1 cut(s)	642
BstMCI	CGRYCG	2 cut(s)	170, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 424, 440, 513
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	408
BstSLI	GKGCMC	3 cut(s)	105, 236, 690
BstUI	CGCG	2 cut(s)	260, 299
BstV1I	GCAGC	3 cut(s)	191, 355, 427
BstV2I	GAAGAC	1 cut(s)	669
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	8 cut(s)	103, 136, 186, 221, 317, 427, 434, 650
BtgI	CCRYGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	487, 637, 654
Cac8I	GCNNGC	5 cut(s)	236, 262, 297, 441, 652
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	3 cut(s)	61, 257, 415
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	7 cut(s)	101, 102, 315, 459, 552, 604, 649
Cfr42I	CCGCGG	1 cut(s)	300
CseI	GACGC	2 cut(s)	89, 251
CspAI	ACCGGT	1 cut(s)	682
CviAII	CATG	2 cut(s)	88, 188
DdeI	CTNAG	1 cut(s)	597
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	1 cut(s)	644
DpnII	GATC	1 cut(s)	642
DriI	GACNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EciI	GGCGGA	3 cut(s)	366, 581, 615
EclXI	CGGCCG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	3 cut(s)	53, 105, 297
Eco47I	GGWCC	3 cut(s)	459, 552, 604
Eco52I	CGGCCG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	496
Eco91I	GGTNACC	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	4 cut(s)	101, 102, 459, 604
EcoO65I	GGTNACC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	3 cut(s)	53, 105, 297
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
Esp3I	CGTCTC	2 cut(s)	177, 618
FaeI	CATG	2 cut(s)	91, 191
FaiI	YATR	3 cut(s)	89, 189, 423
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	87, 187
FauI	CCCGC	5 cut(s)	304, 449, 500, 509, 659
FokI	GGATG	3 cut(s)	494, 624, 641
FriOI	GRGCYC	3 cut(s)	53, 105, 297
FspBI	CTAG	2 cut(s)	107, 504
GlaI	GCGC	3 cut(s)	60, 256, 414
GsaI	CCCAGC	2 cut(s)	343, 450
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	8 cut(s)	103, 136, 186, 221, 317, 427, 434, 650
HapII	CCGG	5 cut(s)	222, 286, 410, 617, 683
HgaI	GACGC	2 cut(s)	89, 251
HhaI	GCGC	3 cut(s)	61, 257, 415
Hin1I	GRCGYC	2 cut(s)	59, 243
Hin1II	CATG	2 cut(s)	91, 191
Hin6I	GCGC	3 cut(s)	59, 255, 413
HinP1I	GCGC	3 cut(s)	59, 255, 413
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	1 cut(s)	620
HpaII	CCGG	5 cut(s)	222, 286, 410, 617, 683
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	2 cut(s)	561, 688
Hpy188I	TCNGA	1 cut(s)	642
Hpy188III	TCNNGA	2 cut(s)	165, 617
Hpy8I	GTNNAC	2 cut(s)	561, 688
Hpy99I	CGWCG	4 cut(s)	58, 83, 245, 696
HpyAV	CCTTC	5 cut(s)	283, 296, 470, 568, 595
HpyCH4III	ACNGT	2 cut(s)	171, 692
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	264, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 424, 440, 513
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	2 cut(s)	59, 243
Hsp92II	CATG	2 cut(s)	91, 191
HspAI	GCGC	3 cut(s)	59, 255, 413
KasI	GGCGCC	1 cut(s)	58
KflI	GGGWCCC	1 cut(s)	459
Kpn2I	TCCGGA	1 cut(s)	616
KspI	CCGCGG	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	292, 568
Lsp1109I	GCAGC	3 cut(s)	191, 355, 427
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	2 cut(s)	107, 504
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	74, 392
MalI	GATC	1 cut(s)	644
MboI	GATC	1 cut(s)	642
MboII	GAAGA	3 cut(s)	314, 592, 669
MfeI	CAATTG	1 cut(s)	659
MhlI	GDGCHC	5 cut(s)	53, 105, 236, 297, 690
MluCI	AATT	3 cut(s)	5, 277, 659
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	614
MroI	TCCGGA	1 cut(s)	616
MspA1I	CMGCKG	2 cut(s)	299, 443
MspI	CCGG	5 cut(s)	222, 286, 410, 617, 683
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	659
MvnI	CGCG	2 cut(s)	260, 299
MwoI	GCNNNNNNNGC	4 cut(s)	261, 424, 440, 513
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	1 cut(s)	642
NlaIII	CATG	2 cut(s)	91, 191
NlaIV	GGNNCC	9 cut(s)	60, 102, 103, 104, 156, 294, 316, 460, 461
NmeAIII	GCCGAG	2 cut(s)	332, 626
PceI	AGGCCT	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	682
PleI	GAGTC	1 cut(s)	614
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	614
PpuMI	RGGWCCY	2 cut(s)	459, 604
Psp5II	RGGWCCY	2 cut(s)	459, 604
PspEI	GGTNACC	1 cut(s)	392
PspFI	CCCAGC	2 cut(s)	339, 446
PspN4I	GGNNCC	9 cut(s)	60, 102, 103, 104, 156, 294, 316, 460, 461
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	7 cut(s)	101, 102, 315, 459, 552, 604, 649
PspPPI	RGGWCCY	2 cut(s)	459, 604
PstNI	CAGNNNCTG	1 cut(s)	446
SacII	CCGCGG	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	642
Sau96I	GGNCC	7 cut(s)	101, 102, 315, 459, 552, 604, 649
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	5 cut(s)	53, 105, 236, 297, 690
SetI	ASST	8 cut(s)	117, 126, 310, 399, 405, 489, 609, 704
SfaNI	GCATC	1 cut(s)	663
SfoI	GGCGCC	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	682
SgrBI	CCGCGG	1 cut(s)	300
SinI	GGWCC	3 cut(s)	459, 552, 604
Sse9I	AATT	3 cut(s)	5, 277, 659
SseBI	AGGCCT	1 cut(s)	427
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	107, 504
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	171, 692
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	5 cut(s)	166, 195, 240, 491, 694
TasI	AATT	3 cut(s)	5, 277, 659
TauI	GCSGC	7 cut(s)	221, 260, 421, 446, 516, 631, 634
TseI	GCWGC	3 cut(s)	204, 343, 415
Van91I	CCANNNNNTGG	1 cut(s)	446
VneI	GTGCAC	1 cut(s)	686
VpaK11BI	GGWCC	3 cut(s)	459, 552, 604
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 194
XspI	CTAG	2 cut(s)	107, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.