Rh2DG237800

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002915
Physical Location & Seq
Reverse (-)
23872913 .. 23873725
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG237800.1

Sequence Viewer

Length: 813 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACAACGGAGGAGGAGGAGGTGGTGGCAGAGTCAGAATGGCGAGTTCCGCAGCCGAAGCCGCTTCGGCTGCGGCTCAGCTACAACAACAACAGCAGACAAGGAGGGCGTGCAGGTATAGGGAGTGCTTGAAGAACCACGCCGTGGGGATTGGAGGGCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCCGCCGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAGGGAGGCCGACGAGCCTTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACCACGGGGGGTTCGGGCACCCGCAATTCTCGGCGAGTGGCGGGTACTACCGCACTCCCGGCGGGTACCTCCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACCTCGGGCGGGGGAGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGCGGCGGCGGAGGAGGGAGTGGGTTTGGAATGGGAATGGGAACGACGTCGTCCAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGATCGGCTGGGGTGGAGGATTCAGAAGCAGGACGAGGCGGCGGTGCAGAGCTTCTGCGACGAGACCGGAGTGAAGCGTCATGTCCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGGCAAGAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

270

Amino Acids

29.13

Weight (kDa)

6.65

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 61 - 113 5.9e-28 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 174
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 3 cut(s) 361, 417, 465
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 509
AccII CGCG 3 cut(s) 233, 287, 302
AclWI GGATC 3 cut(s) 21, 540, 687
AcoI YGGCCR 1 cut(s) 258
AcvI CACGTG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 611
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 446, 467
AfiI CCNNNNNNNGG 8 cut(s) 214, 331, 334, 371, 406, 519, 563, 624
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 1 cut(s) 202
AhdI GACNNNNNGTC 1 cut(s) 547
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 2 cut(s) 255, 369
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AluBI AGCT 4 cut(s) 151, 358, 673, 729
AluI AGCT 4 cut(s) 151, 358, 673, 729
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 3 cut(s) 21, 540, 687
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 4 cut(s) 258, 336, 373, 491
ApeKI GCWGC 4 cut(s) 122, 140, 484, 502
Asp700I GAANNNNTTC 1 cut(s) 626
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 4 cut(s) 235, 289, 299, 502
AspS9I GGNCC 2 cut(s) 373, 633
AsuC2I CCSGG 1 cut(s) 459
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 2 cut(s) 231, 420
BanI GGYRCC 3 cut(s) 361, 417, 465
BbrPI CACGTG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 127, 134, 489, 496
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 2 cut(s) 197, 490
BciT130I CCWGG 2 cut(s) 257, 371
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 734
BfoI RGCGCY 1 cut(s) 503
BfuAI ACCTGC 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 137
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 3 cut(s) 257, 371, 459
Bme18I GGWCC 1 cut(s) 633
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 373, 633
BmiI GGNNCC 5 cut(s) 48, 268, 363, 419, 467
BmrFI CCNGG 3 cut(s) 257, 371, 459
BmsI GCATC 2 cut(s) 654, 765
BpmI CTGGAG 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 459
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 6 cut(s) 213, 270, 370, 403, 513, 796
BsaWI WCCGGW 1 cut(s) 743
Bsc4I CCNNNNNNNGG 8 cut(s) 214, 331, 334, 371, 406, 519, 563, 624
BseBI CCWGG 2 cut(s) 257, 371
BseDI CCNNGG 6 cut(s) 213, 270, 370, 403, 513, 796
BseGI GGATG 2 cut(s) 669, 780
BseLI CCNNNNNNNGG 8 cut(s) 214, 331, 334, 371, 406, 519, 563, 624
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 6 cut(s) 35, 47, 96, 99, 102, 591
BseSI GKGCMC 2 cut(s) 231, 420
BseXI GCAGC 4 cut(s) 127, 134, 489, 496
BseYI CCCAGC 2 cut(s) 557, 685
BsgI GTGCAG 2 cut(s) 202, 743
Bsh1236I CGCG 3 cut(s) 233, 287, 302
BshFI GGCC 4 cut(s) 260, 338, 375, 493
BshNI GGYRCC 3 cut(s) 361, 417, 465
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 3 cut(s) 264, 459, 744
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 8 cut(s) 214, 331, 334, 371, 406, 519, 563, 624
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 4 cut(s) 260, 338, 375, 493
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 514
Bsp1286I GDGCHC 3 cut(s) 27, 231, 420
Bsp143I GATC 3 cut(s) 13, 532, 679
Bsp1720I GCTNAGC 1 cut(s) 147
BspANI GGCC 4 cut(s) 260, 338, 375, 493
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 3 cut(s) 233, 287, 302
BspLI GGNNCC 5 cut(s) 48, 268, 363, 419, 467
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 3 cut(s) 21, 540, 687
BspT107I GGYRCC 3 cut(s) 361, 417, 465
BspTNI GGTCTC 1 cut(s) 734
BssECI CCNNGG 6 cut(s) 213, 270, 370, 403, 513, 796
BssMI GATC 3 cut(s) 13, 532, 679
BssNI GRCGYC 1 cut(s) 611
Bst2UI CCWGG 2 cut(s) 257, 371
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 617
BstACI GRCGYC 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 181, 231, 498, 675
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 2 cut(s) 213, 403
BstF5I GGATG 2 cut(s) 669, 780
BstFNI CGCG 3 cut(s) 233, 287, 302
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 4 cut(s) 235, 289, 299, 502
BstKTI GATC 3 cut(s) 16, 535, 682
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 3 cut(s) 13, 532, 679
BstNI CCWGG 2 cut(s) 257, 371
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 255, 369, 457
BstSLI GKGCMC 2 cut(s) 231, 420
BstUI CGCG 3 cut(s) 233, 287, 302
BstV1I GCAGC 4 cut(s) 127, 134, 489, 496
BsuRI GGCC 4 cut(s) 260, 338, 375, 493
BtgI CCRYGG 2 cut(s) 213, 403
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 669, 780
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 4 cut(s) 181, 231, 498, 675
CfoI GCGC 4 cut(s) 235, 289, 299, 502
Cfr13I GGNCC 2 cut(s) 373, 633
CseI GACGC 4 cut(s) 286, 293, 490, 743
Csp6I GTAC 2 cut(s) 445, 466
CviAII CATG 2 cut(s) 547, 758
CviQI GTAC 2 cut(s) 445, 466
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 15, 534, 681
DpnII GATC 3 cut(s) 13, 532, 679
DraIII CACNNNGTG 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 617
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 617
EciI GGCGGA 2 cut(s) 588, 692
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 633
Eco72I CACGTG 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 255, 369
EcoT22I ATGCAT 1 cut(s) 780
FaeI CATG 2 cut(s) 550, 761
FaiI YATR 4 cut(s) 189, 548, 759, 780
FaqI GGGAC 1 cut(s) 289
FatI CATG 2 cut(s) 546, 757
FauI CCCGC 4 cut(s) 429, 434, 455, 512
FblI GTMKAC 1 cut(s) 509
FokI GGATG 2 cut(s) 676, 787
GlaI GCGC 4 cut(s) 234, 288, 298, 501
GsaI CCCAGC 2 cut(s) 561, 689
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 4 cut(s) 260, 338, 375, 493
HapII CCGG 3 cut(s) 264, 459, 744
HgaI GACGC 4 cut(s) 286, 293, 490, 743
HhaI GCGC 4 cut(s) 235, 289, 299, 502
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 2 cut(s) 550, 761
Hin6I GCGC 4 cut(s) 233, 287, 297, 500
HinP1I GCGC 4 cut(s) 233, 287, 297, 500
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 4 cut(s) 59, 102, 553, 697
HpaII CCGG 3 cut(s) 264, 459, 744
Hpy166II GTNNAC 2 cut(s) 70, 510
Hpy188I TCNGA 2 cut(s) 107, 702
Hpy188III TCNNGA 4 cut(s) 17, 536, 631, 647
Hpy8I GTNNAC 2 cut(s) 70, 510
Hpy99I CGWCG 7 cut(s) 344, 484, 511, 545, 613, 616, 740
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 3 cut(s) 378, 474, 611
HpyCH4V TGCA 3 cut(s) 183, 724, 778
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 3 cut(s) 378, 474, 611
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 2 cut(s) 550, 761
HspAI GCGC 4 cut(s) 233, 287, 297, 500
KpnI GGTACC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 13, 532, 679
LmnI GCTCC 5 cut(s) 22, 46, 266, 649, 670
Lsp1109I GCAGC 4 cut(s) 127, 134, 489, 496
LweI GCATC 2 cut(s) 654, 765
MaeII ACGT 3 cut(s) 378, 474, 611
MaeIII GTNAC 3 cut(s) 53, 305, 475
MalI GATC 3 cut(s) 15, 534, 681
MboI GATC 3 cut(s) 13, 532, 679
MboII GAAGA 2 cut(s) 214, 634
MhlI GDGCHC 3 cut(s) 27, 231, 420
MluCI AATT 1 cut(s) 425
MlyI GAGTC 2 cut(s) 53, 111
Mph1103I ATGCAT 1 cut(s) 780
MroXI GAANNNNTTC 1 cut(s) 626
MspA1I CMGCKG 4 cut(s) 358, 384, 496, 561
MspI CCGG 3 cut(s) 264, 459, 744
MspR9I CCNGG 3 cut(s) 257, 371, 459
MvaI CCWGG 2 cut(s) 257, 371
MvnI CGCG 3 cut(s) 233, 287, 302
NciI CCSGG 1 cut(s) 459
NdeII GATC 3 cut(s) 13, 532, 679
NlaIII CATG 2 cut(s) 550, 761
NlaIV GGNNCC 5 cut(s) 48, 268, 363, 419, 467
NmeAIII GCCGAG 4 cut(s) 75, 295, 410, 777
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 553, 697
PflFI GACNNNGTC 1 cut(s) 613
PflMI CCANNNNNTGG 1 cut(s) 214
PleI GAGTC 2 cut(s) 53, 110
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
PpsI GAGTC 2 cut(s) 53, 110
Ppu21I YACGTR 1 cut(s) 475
PscI ACATGT 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 255, 369
PspCI CACGTG 1 cut(s) 475
PspFI CCCAGC 2 cut(s) 557, 685
PspGI CCWGG 2 cut(s) 255, 369
PspN4I GGNNCC 5 cut(s) 48, 268, 363, 419, 467
PspPI GGNCC 2 cut(s) 373, 633
PsyI GACNNNGTC 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 446, 467
RsaNI GTAC 2 cut(s) 445, 466
SalI GTCGAC 1 cut(s) 508
Sau3AI GATC 3 cut(s) 13, 532, 679
Sau96I GGNCC 2 cut(s) 373, 633
SchI GAGTC 2 cut(s) 53, 111
ScrFI CCNGG 3 cut(s) 257, 371, 459
SduI GDGCHC 3 cut(s) 27, 231, 420
SfaNI GCATC 2 cut(s) 654, 765
SinI GGWCC 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 1 cut(s) 425
StyD4I CCNGG 3 cut(s) 255, 369, 457
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 3 cut(s) 381, 477, 614
TaqI TCGA 2 cut(s) 509, 551
TasI AATT 1 cut(s) 425
TfiI GAWTC 2 cut(s) 553, 697
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 4 cut(s) 122, 140, 484, 502
Tsp45I GTSAC 1 cut(s) 475
TspGWI ACGGA 2 cut(s) 93, 545
Tth111I GACNNNGTC 1 cut(s) 613
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 633
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 626
ZraI GACGTC 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.