Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Forward (+)

26136002 .. 26137554

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGTTTGAAGACAACAACAACAACAACGACGAAGAGCAAGAAGAGGATATGAATCTTCATGAGGAAGAAGAAGACGACGACGCCGTTTACGACTCTCCTCCTCTCTCTCGTGTTCTCCCCAAAGCCTCGACAGAAAGTCATGAAACCACCGGAACTACTTCCACAGGCGGTGGCGGAGGATTCATGGTTGTTCACGGCGGTGGAGGGAGCAGGTTTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTCGATGGTTGTGGTGAGTTTATGCCAGCTGGAATCGAAGGTACCATCGACGCTCTAAAATGCGCCGCTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCATCACGCGCCGCCACAACATCAGCCTCCTCCTCCCCCGCCAGGGTTTTACCGTCTTCCAGCTCCGGTTAGCTACCGACCACCACCGTCACAAGCTCCTCCTCTTCAGCTCGCTCTTCCCCCTCCACAAAGAGAGAGATCAGAAGATCCAATGGAGACGTCTTCAGCTGAAGCAGGAGGAGGGATTAGGAAGAGGCATAGGACTAAGTTTACGGCTGAGCAAAAGGAAAGGATGTTAGCTTTAGCTGAGAGGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAGAGATTTTGTCAGGAGACTGGTGTTCCGAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTAAGTCGCCTTCACCACTTCATCATCATCAGGCTCCTCCTCCTCCACCACCACAGTCTTCGTTTCATCATGAACAAGACCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010371 GO:0010431 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032504 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044464 GO:0046885 GO:0046890 GO:0046983 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0071695 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

279

Amino Acids

31.1

Weight (kDa)

5.92

Isoelectric Point (pI)

78.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	73 - 124	8.6e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	204
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	2 cut(s)	269, 392
AciI	CCGC	9 cut(s)	171, 177, 201, 248, 269, 336, 364, 395, 422
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	3 cut(s)	473, 531, 573
AcyI	GRCGYC	2 cut(s)	84, 542
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	3 cut(s)	367, 425, 426
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	1 cut(s)	11
AhdI	GACNNNNNGTC	2 cut(s)	138, 269
AjnI	CCWGG	1 cut(s)	424
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	8 cut(s)	299, 446, 456, 479, 493, 551, 623, 629
AluI	AGCT	8 cut(s)	299, 446, 456, 479, 493, 551, 623, 629
Alw26I	GTCTC	5 cut(s)	239, 533, 649, 686, 700
AlwI	GGATC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	648
Asp700I	GAANNNNTTC	2 cut(s)	160, 672
Asp718I	GGTACC	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	335, 394
AsuHPI	GGTGA	4 cut(s)	262, 296, 341, 756
BanI	GGYRCC	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	745, 777
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	5 cut(s)	18, 81, 431, 537, 801
BccI	CCATC	4 cut(s)	269, 323, 393, 636
BceAI	ACGGC	3 cut(s)	71, 214, 612
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	5 cut(s)	239, 533, 649, 686, 700
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	204
BisI	GCNGC	2 cut(s)	336, 395
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	2 cut(s)	337, 396
Bme1390I	CCNGG	1 cut(s)	426
BmeRI	GACNNNNNGTC	2 cut(s)	138, 269
BmiI	GGNNCC	3 cut(s)	224, 313, 786
BmrFI	CCNGG	1 cut(s)	426
BpiI	GAAGAC	5 cut(s)	18, 81, 431, 537, 801
Bpu1102I	GCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	54
BsaHI	GRCGYC	2 cut(s)	84, 542
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	2 cut(s)	152, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 425, 426
Bse1I	ACTGG	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	2 cut(s)	621, 647
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	3 cut(s)	367, 425, 426
BseMII	CTCAG	2 cut(s)	591, 621
BseNI	ACTGG	1 cut(s)	700
Bsh1236I	CGCG	2 cut(s)	269, 392
Bsh1285I	CGRYCG	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	153, 449
BslI	CCNNNNNNNGG	3 cut(s)	367, 425, 426
BsmAI	GTCTC	5 cut(s)	239, 533, 649, 686, 700
BsmBI	CGTCTC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	521, 529
Bsp1720I	GCTNAGC	1 cut(s)	600
BspACI	CCGC	9 cut(s)	171, 177, 201, 248, 269, 336, 364, 395, 422
BspCNI	CTCAG	2 cut(s)	592, 622
BspFNI	CGCG	2 cut(s)	269, 392
BspHI	TCATGA	3 cut(s)	61, 142, 820
BspLI	GGNNCC	3 cut(s)	224, 313, 786
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	524
BspQI	GCTCTTC	2 cut(s)	30, 504
BspT107I	GGYRCC	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	2 cut(s)	521, 529
BssNI	GRCGYC	2 cut(s)	84, 542
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	353, 437, 471, 807
Bst6I	CTCTTC	5 cut(s)	30, 39, 492, 504, 569
BstACI	GRCGYC	2 cut(s)	84, 542
BstAFI	CTTAAG	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	297, 495
BstDEI	CTNAG	3 cut(s)	588, 600, 630
BstF5I	GGATG	2 cut(s)	621, 647
BstFNI	CGCG	2 cut(s)	269, 392
BstHHI	GCGC	2 cut(s)	335, 394
BstKTI	GATC	2 cut(s)	524, 532
BstMAI	GTCTC	5 cut(s)	239, 533, 649, 686, 700
BstMBI	GATC	2 cut(s)	521, 529
BstMCI	CGRYCG	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	2 cut(s)	269, 392
BstV2I	GAAGAC	5 cut(s)	18, 81, 431, 537, 801
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	621, 647
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	297, 495
CciI	TCATGA	3 cut(s)	61, 142, 820
CfoI	GCGC	2 cut(s)	335, 394
CseI	GACGC	2 cut(s)	92, 329
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	5 cut(s)	62, 143, 187, 821, 837
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	3 cut(s)	588, 600, 630
DpnI	GATC	2 cut(s)	523, 531
DpnII	GATC	2 cut(s)	521, 529
DriI	GACNNNNNGTC	2 cut(s)	138, 269
Eam1104I	CTCTTC	5 cut(s)	30, 39, 492, 504, 569
Eam1105I	GACNNNNNGTC	2 cut(s)	138, 269
EarI	CTCTTC	5 cut(s)	30, 39, 492, 504, 569
EciI	GGCGGA	1 cut(s)	192
Eco57I	CTGAAG	3 cut(s)	473, 531, 573
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	5 cut(s)	65, 146, 190, 824, 840
FatI	CATG	5 cut(s)	61, 142, 186, 820, 836
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	336, 395
FokI	GGATG	2 cut(s)	628, 654
Fsp4HI	GCNGC	2 cut(s)	336, 395
GlaI	GCGC	2 cut(s)	334, 393
GluI	GCNGC	2 cut(s)	336, 395
HapII	CCGG	2 cut(s)	153, 449
HgaI	GACGC	2 cut(s)	92, 329
HhaI	GCGC	2 cut(s)	335, 394
Hin1I	GRCGYC	2 cut(s)	84, 542
Hin1II	CATG	5 cut(s)	65, 146, 190, 824, 840
Hin6I	GCGC	2 cut(s)	333, 392
HinP1I	GCGC	2 cut(s)	333, 392
HinfI	GANTC	5 cut(s)	55, 95, 183, 303, 673
HpaII	CCGG	2 cut(s)	153, 449
HphI	GGTGA	4 cut(s)	262, 296, 341, 756
Hpy166II	GTNNAC	4 cut(s)	91, 196, 253, 594
Hpy188I	TCNGA	4 cut(s)	526, 654, 678, 705
Hpy188III	TCNNGA	5 cut(s)	62, 143, 238, 689, 821
Hpy8I	GTNNAC	4 cut(s)	91, 196, 253, 594
Hpy99I	CGWCG	4 cut(s)	35, 83, 86, 323
HpyAV	CCTTC	2 cut(s)	302, 771
HpyCH4III	ACNGT	4 cut(s)	353, 437, 471, 807
HpyCH4IV	ACGT	1 cut(s)	542
HpyF3I	CTNAG	3 cut(s)	588, 600, 630
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	2 cut(s)	84, 542
Hsp92II	CATG	5 cut(s)	65, 146, 190, 824, 840
HspAI	GCGC	2 cut(s)	333, 392
KpnI	GGTACC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	521, 529
LguI	GCTCTTC	2 cut(s)	30, 504
LmnI	GCTCC	4 cut(s)	210, 451, 484, 790
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	4 cut(s)	347, 353, 471, 726
MalI	GATC	2 cut(s)	523, 531
MboI	GATC	2 cut(s)	521, 529
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	2 cut(s)	371, 648
MlyI	GAGTC	1 cut(s)	89
MroXI	GAANNNNTTC	2 cut(s)	160, 672
MseI	TTAA	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	2 cut(s)	299, 551
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	2 cut(s)	153, 449
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	2 cut(s)	269, 392
NdeII	GATC	2 cut(s)	521, 529
NlaIII	CATG	5 cut(s)	65, 146, 190, 824, 840
NlaIV	GGNNCC	3 cut(s)	224, 313, 786
NmuCI	GTSAC	2 cut(s)	347, 471
OliI	CACNNNNGTG	1 cut(s)	201
PagI	TCATGA	3 cut(s)	61, 142, 820
PciSI	GCTCTTC	2 cut(s)	30, 504
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 90
PdmI	GAANNNNTTC	2 cut(s)	160, 672
PfeI	GAWTC	4 cut(s)	55, 183, 303, 673
PkrI	GCNGC	2 cut(s)	337, 396
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	224, 313, 786
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	2 cut(s)	299, 551
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	201
SapI	GCTCTTC	2 cut(s)	30, 504
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	2 cut(s)	336, 395
Sau3AI	GATC	2 cut(s)	521, 529
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	236, 716
SmoI	CTYRAG	2 cut(s)	236, 716
Sse9I	AATT	2 cut(s)	371, 648
SsiI	CCGC	9 cut(s)	171, 177, 201, 248, 269, 336, 364, 395, 422
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	4 cut(s)	353, 437, 471, 807
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	4 cut(s)	131, 273, 306, 318
TasI	AATT	2 cut(s)	371, 648
TauI	GCSGC	2 cut(s)	338, 397
TfiI	GAWTC	4 cut(s)	55, 183, 303, 673
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TseFI	GTSAC	2 cut(s)	347, 471
Tsp45I	GTSAC	2 cut(s)	347, 471
TspDTI	ATGAA	8 cut(s)	50, 68, 159, 175, 681, 761, 806, 837
TspGWI	ACGGA	1 cut(s)	215
Vha464I	CTTAAG	1 cut(s)	716
XapI	RAATTY	1 cut(s)	648
XmnI	GAANNNNTTC	2 cut(s)	160, 672
ZraI	GACGTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.