Prupe.6G196000_v2.0.a1

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002915
Physical Location & Seq
Forward (+)
20377394 .. 20380994
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G196000.1

Sequence Viewer

Length: 864 bp
ATGGAGTTCGAGGATCAAGAGGAGCACGACGAAGAGATGGAGATGGCGGCGAGTTACGACTCGCTCGGAAACTCAGCGGGTGGCGTCCGGGTCAAAATGTCGAGTTCTGGACCCGAGGGCGTGGCAGCAATAGCGGCGGCGGCGGCGGGTTCTCAGCAGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAGAGGAAGGGCGCCTCGAGGTACAGAGAGTGCCTGAAGAACCACGCGGTCGGGATTGGAGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCCGGTGCCGAGGGCACGCTCGACGCGCTAAAATGCGCAGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGGGCGACTCGGGCGGGCTCGCGCTCATGACCCCAGACCCGTACGGGCAGCTGGTGCCGCTCCACGGGCAGCACAACCACCCGCAGTTCTCGCCGTACTACCGGACGCCAGCAGGGTACCTCCAGTTGGCGCCGCACCACAGGCCTCTGGCCCTGCCGTCGACGTCGGGAGGGGGCGGGACCCACAGCAGGGGGGAGGAGCAGGAGGACGACGTGTCGAATCCTAGCGGAGGGGGCGGCGGCGGAGGGGATTTGGGAATGGGAGGGGGTTTACATGGGACGGCGTCTTCCGGGAAGAAGAGGTTCAGGACGAAGTTTACGGCGGAGCAGAAGGAGAGGATGTTGACTTTGGCGGAGACGCTGGGGTGGAGGATTCAGAAGCAGGACGAGCCGGCGATTCAGCAGTTCTGCAACGAGACTGGAGTGAAGCGTCACGTCCTCAAGGTTTGGATGCATAACAACAAGCACACTCTGGGGCCTTCAAATGATGAACCCAACCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

288

Amino Acids

30.75

Weight (kDa)

6.19

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 524
AbsI CCTCGAGG 1 cut(s) 205
Acc16I TGCGCA 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 474
AccB1I GGYRCC 5 cut(s) 200, 290, 412, 474, 487
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 518
AccII CGCG 4 cut(s) 236, 257, 311, 380
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 245
AcyI GRCGYC 6 cut(s) 84, 201, 464, 488, 521, 641
AfaI GTAC 4 cut(s) 212, 401, 455, 476
AfiI CCNNNNNNNGG 7 cut(s) 355, 358, 422, 484, 546, 547, 587
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 1 cut(s) 840
AhdI GACNNNNNGTC 1 cut(s) 571
AjiI CACGTC 2 cut(s) 571, 793
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 707, 767
AlwI GGATC 1 cut(s) 21
Ama87I CYCGRG 4 cut(s) 113, 205, 367, 856
AoxI GGCC 5 cut(s) 250, 285, 500, 507, 833
Asp700I GAANNNNTTC 1 cut(s) 659
Asp718I GGTACC 1 cut(s) 474
AspLEI GCGC 6 cut(s) 203, 259, 313, 323, 382, 490
AspS9I GGNCC 4 cut(s) 110, 508, 537, 833
AsuC2I CCSGG 2 cut(s) 89, 649
AvaI CYCGRG 4 cut(s) 113, 205, 367, 856
AvaII GGWCC 2 cut(s) 110, 537
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 5 cut(s) 200, 290, 412, 474, 487
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 5 cut(s) 280, 436, 499, 654, 693
BcnI CCSGG 2 cut(s) 89, 649
BcoDI GTCTC 2 cut(s) 707, 767
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 2 cut(s) 204, 491
Bme1390I CCNGG 2 cut(s) 89, 649
Bme18I GGWCC 2 cut(s) 110, 537
BmeRI GACNNNNNGTC 1 cut(s) 571
BmeT110I CYCGRG 4 cut(s) 113, 205, 367, 856
BmgBI CACGTC 2 cut(s) 571, 793
BmgT120I GGNCC 4 cut(s) 110, 508, 537, 833
BmiI GGNNCC 9 cut(s) 112, 202, 292, 414, 476, 489, 538, 539, 834
BmrFI CCNGG 2 cut(s) 89, 649
BmsI GCATC 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 636
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 2 cut(s) 464, 798
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 2 cut(s) 89, 649
BsaHI GRCGYC 6 cut(s) 84, 201, 464, 488, 521, 641
BsaJI CCNNGG 3 cut(s) 114, 294, 421
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 7 cut(s) 355, 358, 422, 484, 546, 547, 587
Bse118I RCCGGY 3 cut(s) 283, 287, 748
Bse1I ACTGG 2 cut(s) 481, 781
BseDI CCNNGG 3 cut(s) 114, 294, 421
BseGI GGATG 2 cut(s) 702, 813
BseLI CCNNNNNNNGG 7 cut(s) 355, 358, 422, 484, 546, 547, 587
BseMII CTCAG 2 cut(s) 87, 167
BseNI ACTGG 2 cut(s) 481, 781
BseRI GAGGAG 2 cut(s) 35, 569
BseSI GKGCMC 1 cut(s) 302
BseX3I CGGCCG 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 718
Bsh1236I CGCG 4 cut(s) 236, 257, 311, 380
Bsh1285I CGRYCG 2 cut(s) 240, 288
BshFI GGCC 5 cut(s) 252, 287, 502, 509, 835
BshNI GGYRCC 5 cut(s) 200, 290, 412, 474, 487
BsiEI CGRYCG 2 cut(s) 240, 288
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 4 cut(s) 113, 205, 367, 856
BsiSI CCGG 6 cut(s) 88, 284, 288, 460, 648, 749
BsiWI CGTACG 1 cut(s) 399
BslFI GGGAC 2 cut(s) 550, 649
BslI CCNNNNNNNGG 7 cut(s) 355, 358, 422, 484, 546, 547, 587
BsmAI GTCTC 2 cut(s) 707, 767
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 2 cut(s) 550, 649
BsnI GGCC 5 cut(s) 252, 287, 502, 509, 835
BsoBI CYCGRG 4 cut(s) 113, 205, 367, 856
Bsp1286I GDGCHC 3 cut(s) 27, 302, 378
Bsp143I GATC 1 cut(s) 13
BspANI GGCC 5 cut(s) 252, 287, 502, 509, 835
BspCNI CTCAG 2 cut(s) 86, 166
BspFNI CGCG 4 cut(s) 236, 257, 311, 380
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 9 cut(s) 112, 202, 292, 414, 476, 489, 538, 539, 834
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 5 cut(s) 200, 290, 412, 474, 487
BsrBI CCGCTC 1 cut(s) 418
BsrFI RCCGGY 3 cut(s) 283, 287, 748
BsrI ACTGG 2 cut(s) 481, 781
BssAI RCCGGY 3 cut(s) 283, 287, 748
BssECI CCNNGG 3 cut(s) 114, 294, 421
BssMI GATC 1 cut(s) 13
BssNI GRCGYC 6 cut(s) 84, 201, 464, 488, 521, 641
Bst6I CTCTTC 2 cut(s) 27, 650
BstACI GRCGYC 6 cut(s) 84, 201, 464, 488, 521, 641
BstAPI GCANNNNNTGC 1 cut(s) 412
BstC8I GCNNGC 7 cut(s) 285, 302, 328, 374, 378, 468, 750
BstDEI CTNAG 2 cut(s) 73, 153
BstDSI CCRYGG 1 cut(s) 421
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 2 cut(s) 702, 813
BstFNI CGCG 4 cut(s) 236, 257, 311, 380
BstH2I RGCGCY 2 cut(s) 204, 491
BstHHI GCGC 6 cut(s) 203, 259, 313, 323, 382, 490
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 2 cut(s) 707, 767
BstMBI GATC 1 cut(s) 13
BstMCI CGRYCG 2 cut(s) 240, 288
BstSCI CCNGG 2 cut(s) 87, 647
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 4 cut(s) 236, 257, 311, 380
BstV2I GAAGAC 1 cut(s) 636
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 5 cut(s) 252, 287, 502, 509, 835
BtgI CCRYGG 1 cut(s) 421
BtrI CACGTC 2 cut(s) 571, 793
BtsCI GGATG 2 cut(s) 702, 813
Cac8I GCNNGC 7 cut(s) 285, 302, 328, 374, 378, 468, 750
CciI TCATGA 1 cut(s) 384
CfoI GCGC 6 cut(s) 203, 259, 313, 323, 382, 490
Cfr10I RCCGGY 3 cut(s) 283, 287, 748
Cfr13I GGNCC 4 cut(s) 110, 508, 537, 833
CseI GACGC 6 cut(s) 73, 317, 472, 630, 724, 776
Csp6I GTAC 4 cut(s) 211, 400, 454, 475
CviAII CATG 3 cut(s) 280, 385, 632
CviQI GTAC 4 cut(s) 211, 400, 454, 475
DdeI CTNAG 2 cut(s) 73, 153
DinI GGCGCC 2 cut(s) 202, 489
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DriI GACNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 27, 650
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 2 cut(s) 27, 650
EciI GGCGGA 3 cut(s) 615, 695, 725
EclXI CGGCCG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 110, 537
Eco52I CGGCCG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 4 cut(s) 113, 205, 367, 856
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 2 cut(s) 537, 833
EcoT22I ATGCAT 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 378
EgeI GGCGCC 2 cut(s) 202, 489
EheI GGCGCC 2 cut(s) 202, 489
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 3 cut(s) 283, 388, 635
FaiI YATR 4 cut(s) 281, 386, 633, 813
FaqI GGGAC 2 cut(s) 550, 649
FatI CATG 3 cut(s) 279, 384, 631
FauI CCCGC 5 cut(s) 70, 139, 365, 447, 527
FblI GTMKAC 1 cut(s) 518
FokI GGATG 2 cut(s) 709, 820
FriOI GRGCYC 1 cut(s) 378
FspBI CTAG 1 cut(s) 582
FspI TGCGCA 1 cut(s) 322
GlaI GCGC 6 cut(s) 202, 258, 312, 322, 381, 489
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 2 cut(s) 464, 798
HaeII RGCGCY 2 cut(s) 204, 491
HaeIII GGCC 5 cut(s) 252, 287, 502, 509, 835
HapII CCGG 6 cut(s) 88, 284, 288, 460, 648, 749
HgaI GACGC 6 cut(s) 73, 317, 472, 630, 724, 776
HhaI GCGC 6 cut(s) 203, 259, 313, 323, 382, 490
Hin1I GRCGYC 6 cut(s) 84, 201, 464, 488, 521, 641
Hin1II CATG 3 cut(s) 283, 388, 635
Hin6I GCGC 6 cut(s) 201, 257, 311, 321, 380, 488
HinP1I GCGC 6 cut(s) 201, 257, 311, 321, 380, 488
HincII GTYRAC 2 cut(s) 519, 702
HindII GTYRAC 2 cut(s) 519, 702
HinfI GANTC 5 cut(s) 59, 365, 577, 730, 754
HpaII CCGG 6 cut(s) 88, 284, 288, 460, 648, 749
Hpy166II GTNNAC 4 cut(s) 519, 629, 675, 702
Hpy188I TCNGA 2 cut(s) 68, 735
Hpy188III TCNNGA 6 cut(s) 17, 108, 241, 385, 525, 664
Hpy8I GTNNAC 4 cut(s) 519, 629, 675, 702
Hpy99I CGWCG 7 cut(s) 32, 266, 311, 520, 523, 526, 572
HpyAV CCTTC 3 cut(s) 190, 682, 846
HpyCH4IV ACGT 3 cut(s) 521, 570, 792
HpyCH4V TGCA 3 cut(s) 330, 768, 811
HpyF3I CTNAG 2 cut(s) 73, 153
HpySE526I ACGT 3 cut(s) 521, 570, 792
Hsp92I GRCGYC 6 cut(s) 84, 201, 464, 488, 521, 641
Hsp92II CATG 3 cut(s) 283, 388, 635
HspAI GCGC 6 cut(s) 201, 257, 311, 321, 380, 488
KasI GGCGCC 2 cut(s) 200, 487
KflI GGGWCCC 1 cut(s) 537
KpnI GGTACC 1 cut(s) 478
KroI GCCGGC 2 cut(s) 283, 748
KroNI GCCGGC 2 cut(s) 285, 750
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 4 cut(s) 22, 423, 556, 682
LweI GCATC 1 cut(s) 798
MaeI CTAG 1 cut(s) 582
MaeII ACGT 3 cut(s) 521, 570, 792
MaeIII GTNAC 2 cut(s) 53, 788
MalI GATC 1 cut(s) 15
MbiI CCGCTC 1 cut(s) 418
MboI GATC 1 cut(s) 13
MboII GAAGA 5 cut(s) 44, 238, 636, 664, 667
MhlI GDGCHC 3 cut(s) 27, 302, 378
Mly113I GGCGCC 2 cut(s) 201, 488
MlyI GAGTC 2 cut(s) 53, 359
Mph1103I ATGCAT 1 cut(s) 813
MroNI GCCGGC 2 cut(s) 283, 748
MroXI GAANNNNTTC 1 cut(s) 659
MspA1I CMGCKG 2 cut(s) 77, 409
MspI CCGG 6 cut(s) 88, 284, 288, 460, 648, 749
MspR9I CCNGG 2 cut(s) 89, 649
MvnI CGCG 4 cut(s) 236, 257, 311, 380
NaeI GCCGGC 2 cut(s) 285, 750
NarI GGCGCC 2 cut(s) 201, 488
NciI CCSGG 2 cut(s) 89, 649
NdeII GATC 1 cut(s) 13
NgoMIV GCCGGC 2 cut(s) 283, 748
NlaIII CATG 3 cut(s) 283, 388, 635
NlaIV GGNNCC 9 cut(s) 112, 202, 292, 414, 476, 489, 538, 539, 834
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 788
NsbI TGCGCA 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 813
PaeR7I CTCGAG 1 cut(s) 205
PagI TCATGA 1 cut(s) 384
PceI AGGCCT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdiI GCCGGC 2 cut(s) 285, 750
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 3 cut(s) 577, 730, 754
Pfl23II CGTACG 1 cut(s) 399
PflFI GACNNNGTC 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 647
PleI GAGTC 2 cut(s) 53, 359
PluTI GGCGCC 2 cut(s) 204, 491
PpsI GAGTC 2 cut(s) 53, 359
PpuMI RGGWCCY 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 718
PspLI CGTACG 1 cut(s) 399
PspN4I GGNNCC 9 cut(s) 112, 202, 292, 414, 476, 489, 538, 539, 834
PspPI GGNCC 4 cut(s) 110, 508, 537, 833
PspPPI RGGWCCY 1 cut(s) 537
PspXI VCTCGAGB 1 cut(s) 205
PsyI GACNNNGTC 1 cut(s) 640
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 4 cut(s) 212, 401, 455, 476
RsaNI GTAC 4 cut(s) 211, 400, 454, 475
SalI GTCGAC 1 cut(s) 517
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 4 cut(s) 110, 508, 537, 833
SchI GAGTC 2 cut(s) 53, 359
ScrFI CCNGG 2 cut(s) 89, 649
SduI GDGCHC 3 cut(s) 27, 302, 378
SetI ASST 8 cut(s) 212, 411, 480, 524, 573, 662, 795, 804
SfaNI GCATC 1 cut(s) 798
SfoI GGCGCC 2 cut(s) 202, 489
Sfr274I CTCGAG 1 cut(s) 205
SgrDI CGTCGACG 1 cut(s) 517
SinI GGWCC 2 cut(s) 110, 537
SlaI CTCGAG 1 cut(s) 205
SmlI CTYRAG 2 cut(s) 205, 797
SmoI CTYRAG 2 cut(s) 205, 797
SseBI AGGCCT 1 cut(s) 502
SspDI GGCGCC 2 cut(s) 200, 487
SspMI CTAG 1 cut(s) 582
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 87, 647
TaiI ACGT 3 cut(s) 524, 573, 795
TaqI TCGA 7 cut(s) 9, 101, 206, 261, 306, 518, 575
TfiI GAWTC 3 cut(s) 577, 730, 754
TseFI GTSAC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 2 cut(s) 268, 861
Tth111I GACNNNGTC 1 cut(s) 640
VpaK11BI GGWCC 2 cut(s) 110, 537
XagI CCTNNNNNAGG 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.