Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

43152627 .. 43155075

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G527100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAATTTGAGGAGCACGAAGAGCACGAGGAGGAGATGGAGATGGAGATGCAGCCGGCGCCCCCAGGTTACGACTCGGCTGGGGCGAGTTCCAGGGCCAAAATGGGGCCAGCCCGGGAGGGCACCGTCTCCACCGCAAGAAAGAGGGGGCCCACCGCCACAGCGGCAATCACCAACACCACCACCACCCTCACCACCATGGTCAGGTACAGAGAATGCCTCAAGAATCACGCCGTCAGCATCGGTGGTCACGCCGTCGACGGCTGCTGCGAGTTCCTGGCTGCCGGGGACGAGGGAACAATGGACGCGCTCATATGCGCCGCCTGCAACTGCCATCGCAACTTCCACCGCAAGGAGCCCGAGGGCGAGCTGATTCATCACCATCAGGGTGGTACTACTGGGCCCTACCACCAGAGCGGTGGGTCCCACCACCACCTCCTCCAGCACCAATTTTCCTCGGCCTTCTATCGCCCACCGCCACCGCCATCTGGCTACCTGATCACCTCTCCGCACGCAAGGCCCACTCTAACCTTGCCTGCAGCATCAGGCGGTGGCGGTGGGTCTCATAGTAGGGACGATGGTGAGGATGTCTCGAACCCCAGCTCGAGCGGCGGTGGCGGTGGAGGAGGAGGAGGATTTGGGATAAATAAGAAGAGGCACCGGACCAAGTTCACGCAGGAGCAGAAGGAAAAGATGCTGGAGTTTGCGGAGAAAGTTGGGTGGAGGATTCAGAAGCATGACGAGGCAGCGGTGGAGGAGTTTTGTGGAGAGACTGGAGTGAAGCGACAGGTTCTCAAGGTTTGGATGCACAACAACAAGCACACCCTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

278

Amino Acids

29.92

Weight (kDa)

6.46

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	58, 122, 657
AccBSI	CCGCTC	2 cut(s)	417, 609
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	2 cut(s)	209, 394
AfiI	CCNNNNNNNGG	4 cut(s)	105, 204, 352, 488
AjnI	CCWGG	3 cut(s)	64, 92, 276
AluBI	AGCT	2 cut(s)	370, 603
AluI	AGCT	2 cut(s)	370, 603
Alw21I	GWGCWC	2 cut(s)	18, 27
Alw26I	GTCTC	4 cut(s)	133, 567, 595, 764
Ama87I	CYCGRG	3 cut(s)	114, 359, 604
AoxI	GGCC	6 cut(s)	96, 107, 149, 401, 459, 518
ApaI	GGGCCC	2 cut(s)	153, 405
ApeKI	GCWGC	6 cut(s)	52, 264, 267, 281, 539, 746
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	61, 310, 320
AspS9I	GGNCC	9 cut(s)	96, 107, 149, 150, 401, 402, 423, 519, 663
AsuC2I	CCSGG	3 cut(s)	115, 116, 286
AsuHPI	GGTGA	5 cut(s)	163, 184, 371, 493, 593
AvaI	CYCGRG	3 cut(s)	114, 359, 604
AvaII	GGWCC	2 cut(s)	423, 663
BaeGI	GKGCMC	3 cut(s)	125, 153, 405
BanI	GGYRCC	3 cut(s)	58, 122, 657
BanII	GRGCYC	3 cut(s)	153, 360, 405
BauI	CACGAG	1 cut(s)	26
Bbv12I	GWGCWC	2 cut(s)	18, 27
BbvI	GCAGC	6 cut(s)	64, 251, 254, 268, 551, 758
BccI	CCATC	6 cut(s)	31, 37, 342, 390, 493, 572
BceAI	ACGGC	3 cut(s)	218, 239, 277
BciT130I	CCWGG	3 cut(s)	66, 94, 278
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	3 cut(s)	115, 116, 286
BcoDI	GTCTC	4 cut(s)	133, 567, 595, 764
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	9 cut(s)	53, 165, 265, 268, 282, 321, 540, 610, 747
BlsI	GCNGC	9 cut(s)	54, 166, 266, 269, 283, 322, 541, 611, 748
Bme1390I	CCNGG	6 cut(s)	66, 94, 115, 116, 278, 286
Bme18I	GGWCC	2 cut(s)	423, 663
BmeT110I	CYCGRG	3 cut(s)	114, 359, 604
BmgT120I	GGNCC	9 cut(s)	96, 107, 149, 150, 401, 402, 423, 519, 663
BmrFI	CCNGG	6 cut(s)	66, 94, 115, 116, 278, 286
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	5 cut(s)	39, 249, 551, 684, 795
BmuI	ACTGGG	1 cut(s)	408
BplI	GAGNNNNNCTC	4 cut(s)	204, 236, 575, 607
BpmI	CTGGAG	3 cut(s)	425, 719, 795
BpuEI	CTTGAG	2 cut(s)	206, 779
BpuMI	CCSGG	3 cut(s)	115, 116, 286
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	7 cut(s)	64, 93, 114, 198, 285, 360, 456
BsaWI	WCCGGW	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 204, 352, 488
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	403, 778
BseBI	CCWGG	3 cut(s)	66, 94, 278
BseDI	CCNNGG	7 cut(s)	64, 93, 114, 198, 285, 360, 456
BseGI	GGATG	2 cut(s)	592, 810
BseLI	CCNNNNNNNGG	4 cut(s)	105, 204, 352, 488
BseNI	ACTGG	2 cut(s)	403, 778
BseRI	GAGGAG	8 cut(s)	26, 44, 47, 428, 639, 642, 645, 770
BseSI	GKGCMC	3 cut(s)	125, 153, 405
BseXI	GCAGC	6 cut(s)	64, 251, 254, 268, 551, 758
BseYI	CCCAGC	2 cut(s)	80, 599
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	6 cut(s)	98, 109, 151, 403, 461, 520
BshNI	GGYRCC	3 cut(s)	58, 122, 657
BsiHKAI	GWGCWC	2 cut(s)	18, 27
BsiHKCI	CYCGRG	3 cut(s)	114, 359, 604
BsiSI	CCGG	4 cut(s)	56, 115, 285, 661
BslFI	GGGAC	3 cut(s)	302, 409, 587
BslI	CCNNNNNNNGG	4 cut(s)	105, 204, 352, 488
BsmAI	GTCTC	4 cut(s)	133, 567, 595, 764
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	3 cut(s)	302, 409, 587
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	6 cut(s)	98, 109, 151, 403, 461, 520
Bso31I	GGTCTC	1 cut(s)	567
BsoBI	CYCGRG	3 cut(s)	114, 359, 604
Bsp120I	GGGCCC	2 cut(s)	149, 401
Bsp1286I	GDGCHC	6 cut(s)	18, 27, 125, 153, 360, 405
Bsp143I	GATC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	198
BspANI	GGCC	6 cut(s)	98, 109, 151, 403, 461, 520
BspFNI	CGCG	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	541
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	3 cut(s)	58, 122, 657
BspTNI	GGTCTC	1 cut(s)	567
BsrBI	CCGCTC	2 cut(s)	417, 609
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	403, 778
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	7 cut(s)	64, 93, 114, 198, 285, 360, 456
BssMI	GATC	1 cut(s)	498
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	3 cut(s)	66, 94, 278
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	15, 647
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	6 cut(s)	57, 111, 325, 368, 513, 537
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	592, 810
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 310, 320
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	4 cut(s)	133, 567, 595, 764
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 58, 164, 324, 517, 609, 615
BstNI	CCWGG	3 cut(s)	66, 94, 278
BstSCI	CCNGG	6 cut(s)	64, 92, 113, 114, 276, 284
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	3 cut(s)	125, 153, 405
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	6 cut(s)	64, 251, 254, 268, 551, 758
BstXI	CCANNNNNNTGG	2 cut(s)	389, 419
BsuRI	GGCC	6 cut(s)	98, 109, 151, 403, 461, 520
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	592, 810
Cac8I	GCNNGC	6 cut(s)	57, 111, 325, 368, 513, 537
CfoI	GCGC	3 cut(s)	61, 310, 320
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	9 cut(s)	96, 107, 149, 150, 401, 402, 423, 519, 663
Cfr9I	CCCGGG	1 cut(s)	114
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	208, 393
CviAII	CATG	3 cut(s)	199, 737, 831
CviQI	GTAC	2 cut(s)	208, 393
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	15, 647
EarI	CTCTTC	2 cut(s)	15, 647
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	3 cut(s)	153, 360, 405
Eco31I	GGTCTC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	423, 663
Eco88I	CYCGRG	3 cut(s)	114, 359, 604
EcoO109I	RGGNCCY	3 cut(s)	149, 402, 423
EcoRII	CCWGG	3 cut(s)	64, 92, 276
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	3 cut(s)	153, 360, 405
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	3 cut(s)	202, 740, 834
FaiI	YATR	6 cut(s)	200, 314, 316, 567, 738, 832
FaqI	GGGAC	3 cut(s)	302, 409, 587
FatI	CATG	3 cut(s)	198, 736, 830
FauNDI	CATATG	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	9 cut(s)	53, 165, 265, 268, 282, 321, 540, 610, 747
FokI	GGATG	2 cut(s)	599, 817
FriOI	GRGCYC	3 cut(s)	153, 360, 405
Fsp4HI	GCNGC	9 cut(s)	53, 165, 265, 268, 282, 321, 540, 610, 747
GlaI	GCGC	3 cut(s)	60, 309, 319
GluI	GCNGC	9 cut(s)	53, 165, 265, 268, 282, 321, 540, 610, 747
GsaI	CCCAGC	2 cut(s)	84, 603
GsuI	CTGGAG	3 cut(s)	425, 719, 795
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	6 cut(s)	98, 109, 151, 403, 461, 520
HapII	CCGG	4 cut(s)	56, 115, 285, 661
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	3 cut(s)	61, 310, 320
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	202, 740, 834
Hin6I	GCGC	3 cut(s)	59, 308, 318
HinP1I	GCGC	3 cut(s)	59, 308, 318
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	74, 226, 373, 727
HpaII	CCGG	4 cut(s)	56, 115, 285, 661
HphI	GGTGA	5 cut(s)	163, 184, 371, 493, 593
Hpy166II	GTNNAC	2 cut(s)	259, 672
Hpy188I	TCNGA	1 cut(s)	732
Hpy188III	TCNNGA	2 cut(s)	223, 592
Hpy8I	GTNNAC	2 cut(s)	259, 672
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyAV	CCTTC	2 cut(s)	472, 679
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	52, 327, 539, 808
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 58, 164, 324, 517, 609, 615
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	202, 740, 834
HspAI	GCGC	3 cut(s)	59, 308, 318
KasI	GGCGCC	1 cut(s)	58
KflI	GGGWCCC	1 cut(s)	423
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	498
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	13, 355, 679
Lsp1109I	GCAGC	6 cut(s)	64, 251, 254, 268, 551, 758
LweI	GCATC	5 cut(s)	39, 249, 551, 684, 795
MaeIII	GTNAC	2 cut(s)	68, 248
MalI	GATC	1 cut(s)	500
MbiI	CCGCTC	2 cut(s)	417, 609
MboI	GATC	1 cut(s)	498
MboII	GAAGA	2 cut(s)	32, 664
MhlI	GDGCHC	6 cut(s)	18, 27, 125, 153, 360, 405
MluCI	AATT	2 cut(s)	5, 449
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	55
MslI	CAYNNNNRTG	2 cut(s)	197, 387
MspA1I	CMGCKG	2 cut(s)	164, 749
MspI	CCGG	4 cut(s)	56, 115, 285, 661
MspR9I	CCNGG	6 cut(s)	66, 94, 115, 116, 278, 286
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	3 cut(s)	66, 94, 278
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	7 cut(s)	22, 58, 164, 324, 517, 609, 615
NaeI	GCCGGC	1 cut(s)	57
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	3 cut(s)	115, 116, 286
NcoI	CCATGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	1 cut(s)	498
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	202, 740, 834
NmeAIII	GCCGAG	2 cut(s)	56, 437
NmuCI	GTSAC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 83, 267
PctI	GAATGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	226, 373, 727
PkrI	GCNGC	9 cut(s)	54, 166, 266, 269, 283, 322, 541, 611, 748
PleI	GAGTC	1 cut(s)	68
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	64, 92, 276
PspFI	CCCAGC	2 cut(s)	80, 599
PspGI	CCWGG	3 cut(s)	64, 92, 276
PspOMI	GGGCCC	2 cut(s)	149, 401
PspPI	GGNCC	9 cut(s)	96, 107, 149, 150, 401, 402, 423, 519, 663
PspPPI	RGGWCCY	1 cut(s)	423
PspXI	VCTCGAGB	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	2 cut(s)	209, 394
RsaNI	GTAC	2 cut(s)	208, 393
RseI	CAYNNNNRTG	2 cut(s)	197, 387
SalI	GTCGAC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	15
SatI	GCNGC	9 cut(s)	53, 165, 265, 268, 282, 321, 540, 610, 747
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	9 cut(s)	96, 107, 149, 150, 401, 402, 423, 519, 663
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	6 cut(s)	66, 94, 115, 116, 278, 286
SduI	GDGCHC	6 cut(s)	18, 27, 125, 153, 360, 405
SfaNI	GCATC	5 cut(s)	39, 249, 551, 684, 795
SfcI	CTRYAG	1 cut(s)	537
SfoI	GGCGCC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	604
SgrDI	CGTCGACG	1 cut(s)	257
SinI	GGWCC	2 cut(s)	423, 663
SlaI	CTCGAG	1 cut(s)	604
SmaI	CCCGGG	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	197, 387
SmlI	CTYRAG	3 cut(s)	221, 604, 794
SmoI	CTYRAG	3 cut(s)	221, 604, 794
Sse9I	AATT	2 cut(s)	5, 449
SspDI	GGCGCC	1 cut(s)	58
StyD4I	CCNGG	6 cut(s)	64, 92, 113, 114, 276, 284
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	258, 593, 605
TasI	AATT	2 cut(s)	5, 449
TauI	GCSGC	3 cut(s)	167, 323, 612
TfiI	GAWTC	3 cut(s)	226, 373, 727
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	6 cut(s)	52, 264, 267, 281, 539, 746
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	365
TspMI	CCCGGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	423, 663
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 416
XhoI	CTCGAG	1 cut(s)	604
XmaI	CCCGGG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.