Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

14032845 .. 14033840

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28365.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTTTGGTCATGAGGTTTGATCTTTACCTTATGTTTGTGATGTTGATGGGTTTAGGGTTTACGATATCAAATGGATACAAGTTCTATGTTGGTGGGAAAGATGGTTGGGTCCCGACTCCTTCCGAAGATTATTCTCATTGGTCTCACCGAAACCGGTTTCAAGTCAACGACACTCTTCATTTTAAGTACGCCAAGGGAAAAGATTCAGTGTTGGAGGTGACTGAACAAGAGTACAACACATGCAACACGACACACCCCCTGACTTCCCTCTCAGACGGAGACTCTCTCTTCCTACTTAGCCACTCAGGTTCCTACTTTTTCATTAGTGGCAACTCTCAAAACTGTCTTAAAGGTCAGAAGCTAGCCGTCAAGGTCTTGTCCACCGTCCACCACAGCCACTCTCCTCGTCATACCTCTCCCTCCCCGTCTCCGGTCCATCAGGAGTTGTCTTCGCCGGGGCCTTCTCCAGGAGTGGAACCATCATCTGATTCAAACTCTCGTGTTCCAGCTCCAGGACCGGCTACAGCTCCCAATTCGGCCGGTTTGGTTGGTCCGGGGATGGTGGTTCTTGTGATTATGATAAGTTCTCTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

199

Amino Acids

21.6

Weight (kDa)

6.78

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 120	3.7e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	540
AfaI	GTAC	2 cut(s)	191, 236
AfiI	CCNNNNNNNGG	3 cut(s)	433, 470, 515
AgeI	ACCGGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	164, 495
AjnI	CCWGG	2 cut(s)	469, 514
AluBI	AGCT	3 cut(s)	364, 512, 530
AluI	AGCT	3 cut(s)	364, 512, 530
Alw26I	GTCTC	3 cut(s)	150, 276, 435
AoxI	GGCC	2 cut(s)	461, 540
AsiGI	ACCGGT	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	205
AspS9I	GGNCC	5 cut(s)	112, 436, 461, 518, 554
AsuC2I	CCSGG	2 cut(s)	459, 558
AsuHPI	GGTGA	2 cut(s)	140, 232
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	4 cut(s)	112, 436, 518, 554
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	444
BccI	CCATC	5 cut(s)	43, 98, 447, 490, 556
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	2 cut(s)	471, 516
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	459, 558
BcoDI	GTCTC	3 cut(s)	150, 276, 435
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	71
Bme1390I	CCNGG	4 cut(s)	459, 471, 516, 558
Bme18I	GGWCC	4 cut(s)	112, 436, 518, 554
BmgT120I	GGNCC	5 cut(s)	112, 436, 461, 518, 554
BmiI	GGNNCC	5 cut(s)	113, 114, 313, 462, 480
BmrFI	CCNGG	4 cut(s)	459, 471, 516, 558
BmtI	GCTAGC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	2 cut(s)	453, 498
BpuMI	CCSGG	2 cut(s)	459, 558
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	195, 458, 557
BsaWI	WCCGGW	2 cut(s)	156, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 470, 515
Bse118I	RCCGGY	3 cut(s)	156, 520, 542
BseBI	CCWGG	2 cut(s)	471, 516
BseDI	CCNNGG	3 cut(s)	195, 458, 557
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	3 cut(s)	433, 470, 515
BseMII	CTCAG	2 cut(s)	288, 321
BseRI	GAGGAG	1 cut(s)	396
BseX3I	CGGCCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	463, 542
BshTI	ACCGGT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	543
BsiSI	CCGG	6 cut(s)	157, 434, 458, 521, 543, 557
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	433, 470, 515
BsmAI	GTCTC	3 cut(s)	150, 276, 435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	463, 542
Bso31I	GGTCTC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	463, 542
BspCNI	CTCAG	2 cut(s)	287, 320
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	5 cut(s)	113, 114, 313, 462, 480
BspOI	GCTAGC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	150
BsrFI	RCCGGY	3 cut(s)	156, 520, 542
BssAI	RCCGGY	3 cut(s)	156, 520, 542
BssECI	CCNNGG	3 cut(s)	195, 458, 557
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	471, 516
Bst4CI	ACNGT	2 cut(s)	347, 388
Bst6I	CTCTTC	2 cut(s)	183, 296
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	274, 299, 307
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	567
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	3 cut(s)	150, 276, 435
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	543
BstNI	CCWGG	2 cut(s)	471, 516
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	4 cut(s)	457, 469, 514, 556
BstSFI	CTRYAG	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	444
BstZI	CGGCCG	1 cut(s)	540
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	463, 542
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	12
Cfr10I	RCCGGY	3 cut(s)	156, 520, 542
Cfr13I	GGNCC	5 cut(s)	112, 436, 461, 518, 554
Csp6I	GTAC	2 cut(s)	190, 235
CspAI	ACCGGT	1 cut(s)	156
CviAII	CATG	2 cut(s)	13, 243
CviJI	RGCY	9 cut(s)	303, 364, 368, 399, 463, 512, 524, 530, 542
CviKI_1	RGCY	9 cut(s)	303, 364, 368, 399, 463, 512, 524, 530, 542
CviQI	GTAC	2 cut(s)	190, 235
DdeI	CTNAG	3 cut(s)	274, 299, 307
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	540
EagI	CGGCCG	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	183, 296
EarI	CTCTTC	2 cut(s)	183, 296
EclXI	CGGCCG	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	69
Eco47I	GGWCC	4 cut(s)	112, 436, 518, 554
Eco52I	CGGCCG	1 cut(s)	540
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoO109I	RGGNCCY	2 cut(s)	112, 461
EcoRII	CCWGG	2 cut(s)	469, 514
EcoRV	GATATC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	2 cut(s)	16, 246
FaiI	YATR	6 cut(s)	14, 35, 90, 244, 414, 581
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	12, 242
FokI	GGATG	1 cut(s)	574
FspBI	CTAG	1 cut(s)	365
GsuI	CTGGAG	2 cut(s)	453, 498
HaeIII	GGCC	2 cut(s)	463, 542
HapII	CCGG	6 cut(s)	157, 434, 458, 521, 543, 557
Hin1II	CATG	2 cut(s)	16, 246
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	118, 206, 284, 491
HpaII	CCGG	6 cut(s)	157, 434, 458, 521, 543, 557
HphI	GGTGA	2 cut(s)	140, 232
Hpy166II	GTNNAC	4 cut(s)	63, 169, 384, 391
Hpy188I	TCNGA	4 cut(s)	127, 277, 360, 490
Hpy188III	TCNNGA	3 cut(s)	13, 115, 443
Hpy8I	GTNNAC	4 cut(s)	63, 169, 384, 391
HpyAV	CCTTC	2 cut(s)	132, 474
HpyCH4III	ACNGT	2 cut(s)	347, 388
HpyCH4V	TGCA	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	274, 299, 307
Hsp92II	CATG	2 cut(s)	16, 246
KflI	GGGWCCC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	517, 535
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	4 cut(s)	140, 170, 283, 444
MluCI	AATT	1 cut(s)	535
MlyI	GAGTC	2 cut(s)	112, 278
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	9, 211, 281, 417, 427, 433
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	186, 351
MspI	CCGG	6 cut(s)	157, 434, 458, 521, 543, 557
MspR9I	CCNGG	4 cut(s)	459, 471, 516, 558
MvaI	CCWGG	2 cut(s)	471, 516
NciI	CCSGG	2 cut(s)	459, 558
NdeII	GATC	1 cut(s)	22
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	16, 246
NlaIV	GGNNCC	5 cut(s)	113, 114, 313, 462, 480
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	246
PagI	TCATGA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	206, 491
PfoI	TCCNGGA	2 cut(s)	469, 514
PinAI	ACCGGT	1 cut(s)	156
PleI	GAGTC	2 cut(s)	112, 278
PpsI	GAGTC	2 cut(s)	112, 278
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	469, 514
PspGI	CCWGG	2 cut(s)	469, 514
PspN4I	GGNNCC	5 cut(s)	113, 114, 313, 462, 480
PspPI	GGNCC	5 cut(s)	112, 436, 461, 518, 554
PspPPI	RGGWCCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	191, 236
RsaNI	GTAC	2 cut(s)	190, 235
SaqAI	TTAA	2 cut(s)	186, 351
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	5 cut(s)	112, 436, 461, 518, 554
SchI	GAGTC	2 cut(s)	112, 278
ScrFI	CCNGG	4 cut(s)	459, 471, 516, 558
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	4 cut(s)	112, 436, 518, 554
Sse9I	AATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	4 cut(s)	457, 469, 514, 556
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	347, 388
TasI	AATT	1 cut(s)	535
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	206, 491
Tru1I	TTAA	2 cut(s)	186, 351
Tru9I	TTAA	2 cut(s)	186, 351
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	170, 313
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	4 cut(s)	112, 436, 518, 554
XagI	CCTNNNNNAGG	1 cut(s)	468
XceI	RCATGY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.