Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Forward (+)

10649309 .. 10651183

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G179800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGTTTGGGAGATTTGCTTGGCTTGTGTTGCTGGTTTGCTTTGGCTTGTGTTTCTCTTCCACACAAGGAAACAGATTCTATGTTGGTGGGAAAGATGGGTGGGTCTTGAACCCCTCTGATAACTACATCCACTGGTCTGGGAGGAACAGGTTCCAGGTCAATGACACTCTATATTTCAAGTACAAGAAAGGAACAGACTCAGTGCTTGTGGTGAACAAGGATGACTTCTTCAAGTGCAACACCAAGAACCCAATTCAGAAGCTAGATGGTGGTGACTCAGAGTTCACTTTGGATAGGTCTGGGCCATTCTACTTCATCAGTGGGCAAAATGGTAATTGTGACAAGGGCCAGAAACTCTTCATAGTTGTCTTGGCTGTTAGGCATCACAACAAACCAAACCCTCCTGTTGCTCCCACAACTCCCCCTAGCACCAGCCCTACCTCCCCATCCCCCAAATCTCCATCTCCTCAGTACCCTCATCACCCTCCTGGGACCTCACCATCACCAGCATCAGTGGCTAACCCTCCAGCCACCTCACCATCACCAGTAGTGGCTAGCCCTCCTGCCACCTCCCCATCACCAGTGGGCTACCCTCCTGCCACCTCCCCATCGCCAGTGGGCTACCCTCCTGCCACCTCACCATCACCAGTGGGCTACCCTCCTGCCACCTCACCATCACCAGTGGGATACACTCCTGCCACCTCACCATCCCCATCAACAACAACATCTCCAGCGCTAGCGCCAGGTCCATCTTCATCCCTTACACCATTTCCTTCTCCACCCTCACCGCCCCCCGAGGGGCCCACACCGCCCTCCGAGGGGCCCACACCGGCCCCGTCCGCAGAGTCTGCGGGCCCCACACCACCGGGAACCGTTTCTCCGCCGCCCGGGACAGCGGACTCGACGGCTCCGAGACCGGCGGGGAGTGGAGCGTCGCATAGTGTAACGGCTCCTTCGAGCGTGCTGGTGTCTTCCGTTGTTTTTATCAGTGTGGCTCTGATGAACAGCTTTGTGCAGGGTGGTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

345

Amino Acids

35.28

Weight (kDa)

8.61

Isoelectric Point (pI)

79.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	791, 812, 843, 854, 884, 887, 899, 923
AfaI	GTAC	2 cut(s)	185, 476
AfeI	AGCGCT	1 cut(s)	738
AfiI	CCNNNNNNNGG	5 cut(s)	800, 801, 821, 822, 890
AgsI	TTSAA	3 cut(s)	112, 181, 235
AjnI	CCWGG	3 cut(s)	156, 490, 745
AloI	GAACNNNNNNTCC	2 cut(s)	865, 897
AluBI	AGCT	2 cut(s)	265, 1011
AluI	AGCT	2 cut(s)	265, 1011
Alw26I	GTCTC	1 cut(s)	910
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	2 cut(s)	797, 890
Aor51HI	AGCGCT	1 cut(s)	738
AoxI	GGCC	6 cut(s)	305, 349, 803, 824, 834, 856
ApaI	GGGCCC	3 cut(s)	807, 828, 860
Asp700I	GAANNNNTTC	3 cut(s)	152, 359, 877
AspLEI	GCGC	2 cut(s)	739, 745
AsuC2I	CCSGG	3 cut(s)	870, 891, 892
AsuNHI	GCTAGC	2 cut(s)	557, 739
AvaI	CYCGRG	2 cut(s)	797, 890
AvaII	GGWCC	2 cut(s)	495, 749
BaeGI	GKGCMC	3 cut(s)	807, 828, 860
BanII	GRGCYC	3 cut(s)	807, 828, 860
BbsI	GAAGAC	1 cut(s)	966
BceAI	ACGGC	2 cut(s)	924, 966
BciT130I	CCWGG	3 cut(s)	158, 492, 747
BciVI	GTATCC	1 cut(s)	683
BcnI	CCSGG	3 cut(s)	870, 891, 892
BcoDI	GTCTC	1 cut(s)	910
BfaI	CTAG	4 cut(s)	266, 429, 558, 740
BfoI	RGCGCY	2 cut(s)	740, 746
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	1 cut(s)	887
BlsI	GCNGC	1 cut(s)	888
Bme1390I	CCNGG	6 cut(s)	158, 492, 747, 870, 891, 892
Bme18I	GGWCC	2 cut(s)	495, 749
BmeT110I	CYCGRG	2 cut(s)	797, 890
BmrFI	CCNGG	6 cut(s)	158, 492, 747, 870, 891, 892
BmsI	GCATC	2 cut(s)	394, 521
BmtI	GCTAGC	2 cut(s)	561, 743
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	2 cut(s)	513, 717
BpuMI	CCSGG	3 cut(s)	870, 891, 892
BsaI	GGTCTC	1 cut(s)	910
BsaJI	CCNNGG	4 cut(s)	491, 798, 819, 890
BsaXI	ACNNNNNCTCC	4 cut(s)	715, 745, 865, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	800, 801, 821, 822, 890
Bse118I	RCCGGY	2 cut(s)	832, 919
Bse1I	ACTGG	6 cut(s)	140, 548, 584, 617, 650, 683
BseBI	CCWGG	3 cut(s)	158, 492, 747
BseDI	CCNNGG	4 cut(s)	491, 798, 819, 890
BseGI	GGATG	5 cut(s)	129, 229, 449, 710, 758
BseLI	CCNNNNNNNGG	5 cut(s)	800, 801, 821, 822, 890
BseMII	CTCAG	3 cut(s)	216, 294, 485
BseNI	ACTGG	6 cut(s)	140, 548, 584, 617, 650, 683
BseRI	GAGGAG	1 cut(s)	459
BseSI	GKGCMC	3 cut(s)	807, 828, 860
BshFI	GGCC	6 cut(s)	307, 351, 805, 826, 836, 858
BsiHKCI	CYCGRG	2 cut(s)	797, 890
BsiSI	CCGG	4 cut(s)	833, 869, 891, 920
BslFI	GGGAC	2 cut(s)	508, 907
BslI	CCNNNNNNNGG	5 cut(s)	800, 801, 821, 822, 890
BsmAI	GTCTC	1 cut(s)	910
BsmFI	GGGAC	2 cut(s)	508, 907
BsnI	GGCC	6 cut(s)	307, 351, 805, 826, 836, 858
Bso31I	GGTCTC	1 cut(s)	910
BsoBI	CYCGRG	2 cut(s)	797, 890
Bsp120I	GGGCCC	3 cut(s)	803, 824, 856
Bsp1286I	GDGCHC	3 cut(s)	807, 828, 860
BspACI	CCGC	8 cut(s)	791, 812, 843, 854, 884, 887, 899, 923
BspANI	GGCC	6 cut(s)	307, 351, 805, 826, 836, 858
BspCNI	CTCAG	3 cut(s)	215, 293, 484
BspOI	GCTAGC	2 cut(s)	561, 743
BspTNI	GGTCTC	1 cut(s)	910
BsrFI	RCCGGY	2 cut(s)	832, 919
BsrI	ACTGG	6 cut(s)	140, 548, 584, 617, 650, 683
BssAI	RCCGGY	2 cut(s)	832, 919
BssECI	CCNNGG	4 cut(s)	491, 798, 819, 890
Bst2UI	CCWGG	3 cut(s)	158, 492, 747
Bst4CI	ACNGT	1 cut(s)	877
Bst6I	CTCTTC	2 cut(s)	64, 365
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstC8I	GCNNGC	4 cut(s)	559, 741, 856, 965
BstDEI	CTNAG	3 cut(s)	202, 280, 471
BstF5I	GGATG	5 cut(s)	129, 229, 449, 710, 758
BstH2I	RGCGCY	2 cut(s)	740, 746
BstHHI	GCGC	2 cut(s)	739, 745
BstMAI	GTCTC	1 cut(s)	910
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 518, 811, 842, 851
BstNI	CCWGG	3 cut(s)	158, 492, 747
BstSCI	CCNGG	6 cut(s)	156, 490, 745, 868, 889, 890
BstSLI	GKGCMC	3 cut(s)	807, 828, 860
BstV2I	GAAGAC	1 cut(s)	966
BstXI	CCANNNNNNTGG	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	6 cut(s)	307, 351, 805, 826, 836, 858
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	5 cut(s)	129, 229, 449, 710, 758
BtsIMutI	CAGTG	9 cut(s)	133, 210, 328, 522, 591, 624, 657, 690, 997
Cac8I	GCNNGC	4 cut(s)	559, 741, 856, 965
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	2 cut(s)	739, 745
Cfr10I	RCCGGY	2 cut(s)	832, 919
Cfr9I	CCCGGG	1 cut(s)	890
CseI	GACGC	1 cut(s)	924
Csp6I	GTAC	2 cut(s)	184, 475
CviQI	GTAC	2 cut(s)	184, 475
DdeI	CTNAG	3 cut(s)	202, 280, 471
Eam1104I	CTCTTC	2 cut(s)	64, 365
EarI	CTCTTC	2 cut(s)	64, 365
EciI	GGCGGA	1 cut(s)	873
Eco24I	GRGCYC	3 cut(s)	807, 828, 860
Eco31I	GGTCTC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	495, 749
Eco47III	AGCGCT	1 cut(s)	738
Eco88I	CYCGRG	2 cut(s)	797, 890
EcoO109I	RGGNCCY	4 cut(s)	495, 803, 824, 857
EcoRII	CCWGG	3 cut(s)	156, 490, 745
EcoT38I	GRGCYC	3 cut(s)	807, 828, 860
FaiI	YATR	4 cut(s)	84, 175, 365, 942
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	508, 907
FauI	CCCGC	2 cut(s)	847, 916
Fnu4HI	GCNGC	1 cut(s)	887
FokI	GGATG	5 cut(s)	116, 236, 436, 697, 745
FriOI	GRGCYC	3 cut(s)	807, 828, 860
Fsp4HI	GCNGC	1 cut(s)	887
FspBI	CTAG	4 cut(s)	266, 429, 558, 740
GlaI	GCGC	2 cut(s)	738, 744
GluI	GCNGC	1 cut(s)	887
GsuI	CTGGAG	2 cut(s)	513, 717
HaeII	RGCGCY	2 cut(s)	740, 746
HaeIII	GGCC	6 cut(s)	307, 351, 805, 826, 836, 858
HapII	CCGG	4 cut(s)	833, 869, 891, 920
HgaI	GACGC	1 cut(s)	924
HhaI	GCGC	2 cut(s)	739, 745
Hin6I	GCGC	2 cut(s)	737, 743
HinP1I	GCGC	2 cut(s)	737, 743
HinfI	GANTC	5 cut(s)	78, 200, 278, 848, 902
HpaII	CCGG	4 cut(s)	833, 869, 891, 920
Hpy166II	GTNNAC	2 cut(s)	217, 288
Hpy188I	TCNGA	6 cut(s)	121, 261, 283, 820, 915, 1002
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	217, 288
Hpy99I	CGWCG	2 cut(s)	910, 940
HpyAV	CCTTC	2 cut(s)	786, 966
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4V	TGCA	2 cut(s)	240, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 518, 811, 842, 851
HpyF3I	CTNAG	3 cut(s)	202, 280, 471
HspAI	GCGC	2 cut(s)	737, 743
LmnI	GCTCC	4 cut(s)	418, 916, 932, 958
LweI	GCATC	2 cut(s)	394, 521
MaeI	CTAG	4 cut(s)	266, 429, 558, 740
MaeIII	GTNAC	3 cut(s)	275, 341, 946
MboII	GAAGA	5 cut(s)	51, 223, 352, 747, 966
MhlI	GDGCHC	3 cut(s)	807, 828, 860
MluCI	AATT	2 cut(s)	255, 337
MlyI	GAGTC	4 cut(s)	194, 272, 857, 896
MroXI	GAANNNNTTC	3 cut(s)	152, 359, 877
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	4 cut(s)	833, 869, 891, 920
MspR9I	CCNGG	6 cut(s)	158, 492, 747, 870, 891, 892
MvaI	CCWGG	3 cut(s)	158, 492, 747
MwoI	GCNNNNNNNGC	5 cut(s)	31, 518, 811, 842, 851
NciI	CCSGG	3 cut(s)	870, 891, 892
NheI	GCTAGC	2 cut(s)	557, 739
NmuCI	GTSAC	2 cut(s)	275, 341
PcsI	WCGNNNNNNNCGW	2 cut(s)	911, 956
PdmI	GAANNNNTTC	3 cut(s)	152, 359, 877
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	888
PleI	GAGTC	4 cut(s)	194, 272, 856, 896
PpsI	GAGTC	4 cut(s)	194, 272, 856, 896
PpuMI	RGGWCCY	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	156, 490, 745
PspGI	CCWGG	3 cut(s)	156, 490, 745
PspOMI	GGGCCC	3 cut(s)	803, 824, 856
PspPPI	RGGWCCY	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	851
RsaI	GTAC	2 cut(s)	185, 476
RsaNI	GTAC	2 cut(s)	184, 475
SatI	GCNGC	1 cut(s)	887
SchI	GAGTC	4 cut(s)	194, 272, 857, 896
ScrFI	CCNGG	6 cut(s)	158, 492, 747, 870, 891, 892
SduI	GDGCHC	3 cut(s)	807, 828, 860
SfaNI	GCATC	2 cut(s)	394, 521
SinI	GGWCC	2 cut(s)	495, 749
SmaI	CCCGGG	1 cut(s)	892
Sse9I	AATT	2 cut(s)	255, 337
SsiI	CCGC	8 cut(s)	791, 812, 843, 854, 884, 887, 899, 923
SspMI	CTAG	4 cut(s)	266, 429, 558, 740
StyD4I	CCNGG	6 cut(s)	156, 490, 745, 868, 889, 890
TaaI	ACNGT	1 cut(s)	877
TaqI	TCGA	2 cut(s)	905, 959
TasI	AATT	2 cut(s)	255, 337
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	889
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	9 cut(s)	140, 210, 328, 522, 591, 624, 657, 690, 997
TseFI	GTSAC	2 cut(s)	275, 341
Tsp45I	GTSAC	2 cut(s)	275, 341
TspDTI	ATGAA	4 cut(s)	307, 352, 747, 1019
TspGWI	ACGGA	1 cut(s)	967
TspMI	CCCGGG	1 cut(s)	890
TspRI	CASTG	9 cut(s)	140, 210, 328, 522, 591, 624, 657, 690, 997
VpaK11BI	GGWCC	2 cut(s)	495, 749
XmaI	CCCGGG	1 cut(s)	890
XmnI	GAANNNNTTC	3 cut(s)	152, 359, 877
XspI	CTAG	4 cut(s)	266, 429, 558, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.