Rmu_sc0003876.1_g000008

Early nodulin-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003876.1
Physical Location & Seq
Forward (+)
21274 .. 22061
788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003876.1_g000008.1.cds

Sequence Viewer

Length: 576 bp
atgagcgttttggttgtcgttttcatggcgttggtcagctattctcaagcacacaagttctttgtgggtggcaaagatgggtggatagtgaaaccgtctgagaacttcaatcactgggccggaaggcataggtttcaggtcaatgatacgctctgtttcaagtacaaaaagggctcaaactctgtcttggttgtaacaaaagaagactactactcgtgcaacaacaacaacccaatacagtacttaacagacggtgactccatcttcagatttgaacgctccggtcctttttttttcatcagcggcaatgccgacgattgccaaaatggtcagaaactgatagtagtagttttggccctaagacacaaatctgaccacggcgatgctccactggtaccctctccttctccggtggcttctcctaactctggtagtaatccatcggatttaaacaacaaaccaactccaccactgaaggagaattcggggtcactgctgcgttttaaaggatcagatgttgggttggtatgtctcggtattgttacgagtatgatttttagtaactttagggtttga

Protein Analysis

191

Amino Acids

21.05

Weight (kDa)

8.9

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AciI CCGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 481
AcuI CTGAAG 2 cut(s) 250, 494
AfaI GTAC 3 cut(s) 164, 242, 396
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 3 cut(s) 109, 160, 275
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 1 cut(s) 337
AoxI GGCC 2 cut(s) 117, 354
ApeKI GCWGC 1 cut(s) 496
ApoI RAATTY 1 cut(s) 481
Asp718I GGTACC 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 117, 284, 355
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 176
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 483
BccI CCATC 3 cut(s) 71, 269, 448
BceAI ACGGC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 536
BisI GCNGC 2 cut(s) 304, 497
BlsI GCNGC 2 cut(s) 305, 498
BmcAI AGTACT 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 117, 284, 355
BmiI GGNNCC 1 cut(s) 396
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 2 cut(s) 281, 409
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 119, 396
Bse3DI GCAATG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 119, 396
BseXI GCAGC 1 cut(s) 483
BshFI GGCC 2 cut(s) 119, 356
BshNI GGYRCC 1 cut(s) 394
BsiSI CCGG 3 cut(s) 120, 282, 410
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 536
BsnI GGCC 2 cut(s) 119, 356
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 509
BspACI CCGC 1 cut(s) 303
BspANI GGCC 2 cut(s) 119, 356
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 2 cut(s) 119, 396
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 1 cut(s) 509
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst4CI ACNGT 3 cut(s) 96, 240, 254
BstDEI CTNAG 2 cut(s) 99, 359
BstDSI CCRYGG 1 cut(s) 376
BstKTI GATC 1 cut(s) 512
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 119, 356
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 4 cut(s) 112, 389, 470, 491
CaiI CAGNNNCTG 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 117, 284, 355
Csp6I GTAC 3 cut(s) 163, 241, 395
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 39, 119, 174, 356, 416
CviKI_1 RGCY 5 cut(s) 39, 119, 174, 356, 416
CviQI GTAC 3 cut(s) 163, 241, 395
DdeI CTNAG 2 cut(s) 99, 359
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
DraI TTTAAA 2 cut(s) 450, 505
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 250, 494
EcoRI GAATTC 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 176
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 26, 129, 529, 551
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 304, 497
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 304, 497
GluI GCNGC 2 cut(s) 304, 497
HaeIII GGCC 2 cut(s) 119, 356
HapII CCGG 3 cut(s) 120, 282, 410
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 257
HpaII CCGG 3 cut(s) 120, 282, 410
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 6 cut(s) 100, 269, 333, 373, 445, 514
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 117, 414, 469
HpyCH4III ACNGT 3 cut(s) 96, 240, 254
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 2 cut(s) 99, 359
Hsp92II CATG 1 cut(s) 28
KpnI GGTACC 1 cut(s) 398
Kzo9I GATC 1 cut(s) 509
LmnI GCTCC 2 cut(s) 284, 391
LpnPI CCDG 7 cut(s) 100, 122, 133, 295, 377, 414, 423
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 1 cut(s) 373
MaeIII GTNAC 5 cut(s) 193, 254, 489, 541, 560
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 2 cut(s) 215, 256
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 481
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 1 cut(s) 409
MseI TTAA 3 cut(s) 245, 449, 504
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 3 cut(s) 120, 282, 410
NdeII GATC 1 cut(s) 509
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 254, 489
PkrI GCNGC 2 cut(s) 305, 498
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 3 cut(s) 117, 284, 355
PstNI CAGNNNCTG 1 cut(s) 337
RsaI GTAC 3 cut(s) 164, 242, 396
RsaNI GTAC 3 cut(s) 163, 241, 395
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 3 cut(s) 245, 449, 504
SatI GCNGC 2 cut(s) 304, 497
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 3 cut(s) 117, 284, 355
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 176
SetI ASST 3 cut(s) 41, 134, 141
SfaNI GCATC 1 cut(s) 373
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 1 cut(s) 481
SsiI CCGC 1 cut(s) 303
TaaI ACNGT 3 cut(s) 96, 240, 254
TasI AATT 1 cut(s) 481
TatI WGTACW 2 cut(s) 162, 240
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 3 cut(s) 245, 449, 504
Tru9I TTAA 3 cut(s) 245, 449, 504
TscAI CASTG 4 cut(s) 119, 396, 477, 498
TseFI GTSAC 2 cut(s) 254, 489
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 2 cut(s) 254, 489
TspDTI ATGAA 2 cut(s) 13, 286
TspRI CASTG 4 cut(s) 119, 396, 477, 498
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 481
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.