Rh7DG377100

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004635
Physical Location & Seq
Reverse (-)
51232923 .. 51233629
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG377100.1

Sequence Viewer

Length: 495 bp
ATGGGGTCTAAAAGATGTATGAGCGTTTTGGTTGTCGTTTTCATGGCGTTGGTCAGCTATTCTCAAGCACACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAAACCGTCTGAGAACTTCAATCACTGGGCCGGAAGGCATAGGTTTCAGGTCAATGATACGCTCTGTTTCAAGTACAAAAAGGGCTCAAACTCTGTCTTGGTTGTAACAAAAGAAGACTACTACTCGTGCAACAACAACAACCCAATACAGTACTTAACAGACGGTGACTCCATCTTCAGATTTGAACGCTCCGGTCCTTTTTTTTTCATCAGCGGCAATGCCGACGATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCCTAAGACACAAATCTGACCACGGCGATGCTCCACTGGTACCCTCTCCTTCTCCGGTGGCTTCTCCTAACTCTGGTAGTAATCCATCGGATTTAAACAACAAACCAACACTCCACCACTGA

Protein Analysis

164

Amino Acids

18.24

Weight (kDa)

8.91

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 6.6e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 3 cut(s) 182, 260, 414
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 127, 178, 293
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 2 cut(s) 135, 372
Asp718I GGTACC 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 135, 302, 373
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 194
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 3 cut(s) 89, 287, 466
BceAI ACGGC 1 cut(s) 412
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
BmcAI AGTACT 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 3 cut(s) 135, 302, 373
BmiI GGNNCC 1 cut(s) 414
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 2 cut(s) 299, 427
BsaXI ACNNNNNCTCC 3 cut(s) 260, 290, 468
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 137, 414
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 137, 414
BshFI GGCC 2 cut(s) 137, 374
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 3 cut(s) 138, 300, 428
BslI CCNNNNNNNGG 1 cut(s) 446
BsnI GGCC 2 cut(s) 137, 374
Bsp1286I GDGCHC 1 cut(s) 194
BspACI CCGC 1 cut(s) 321
BspANI GGCC 2 cut(s) 137, 374
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 2 cut(s) 137, 414
BssECI CCNNGG 1 cut(s) 394
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 114, 258, 272
BstDEI CTNAG 2 cut(s) 117, 377
BstDSI CCRYGG 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 137, 374
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 130, 407, 490
CaiI CAGNNNCTG 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 135, 302, 373
Csp6I GTAC 3 cut(s) 181, 259, 413
CviAII CATG 1 cut(s) 43
CviJI RGCY 5 cut(s) 57, 137, 192, 374, 434
CviKI_1 RGCY 5 cut(s) 57, 137, 192, 374, 434
CviQI GTAC 3 cut(s) 181, 259, 413
DdeI CTNAG 2 cut(s) 117, 377
DraI TTTAAA 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 194
FaeI CATG 1 cut(s) 46
FaiI YATR 3 cut(s) 20, 44, 147
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 322
HaeIII GGCC 2 cut(s) 137, 374
HapII CCGG 3 cut(s) 138, 300, 428
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 275
HpaII CCGG 3 cut(s) 138, 300, 428
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 5 cut(s) 118, 287, 351, 391, 463
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 135, 432
HpyCH4III ACNGT 3 cut(s) 114, 258, 272
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 2 cut(s) 117, 377
Hsp92II CATG 1 cut(s) 46
KpnI GGTACC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 302, 409
LpnPI CCDG 7 cut(s) 118, 140, 151, 313, 395, 432, 441
LweI GCATC 1 cut(s) 391
MaeIII GTNAC 2 cut(s) 211, 272
MboII GAAGA 2 cut(s) 233, 274
MhlI GDGCHC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 1 cut(s) 427
MseI TTAA 2 cut(s) 263, 467
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 3 cut(s) 138, 300, 428
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 323
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 3 cut(s) 135, 302, 373
PstNI CAGNNNCTG 1 cut(s) 355
RsaI GTAC 3 cut(s) 182, 260, 414
RsaNI GTAC 3 cut(s) 181, 259, 413
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 263, 467
SatI GCNGC 1 cut(s) 322
Sau96I GGNCC 3 cut(s) 135, 302, 373
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 269
SduI GDGCHC 1 cut(s) 194
SetI ASST 3 cut(s) 59, 152, 159
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SsiI CCGC 1 cut(s) 321
TaaI ACNGT 3 cut(s) 114, 258, 272
TatI WGTACW 2 cut(s) 180, 258
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 2 cut(s) 263, 467
Tru9I TTAA 2 cut(s) 263, 467
TscAI CASTG 2 cut(s) 137, 414
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 31, 304
TspRI CASTG 2 cut(s) 137, 414
VpaK11BI GGWCC 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.