Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

45762791 .. 45763596

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGTCTAAAAGATGTATGAGCGTTTTGGTTGTCGTTTTCATGGCGTTGGTCAGCTATTCTCAAGCACACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAAACCGTCTGAGAACTTCAATCACTGGGCCGGAAGGCATAGGTTTCAGGTCAATGATACGCTCTGTTTCAAGTACAAAAAGGGCTCAAACTCTGTCTTGGTTGTAACAAAAGAAGACTACTACTCGTGCAACAACAACAACCCAATACAGTACTTAACAGACGGTGACTCCATCTTCAGATTTGAACGCTCCGGTCCTTTTTTTTTCATCAGCGGCAATGCCGACGATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCCTAAGACACAAATCTGACCACGGCGATGCTCCACTGGTACCCTCTCCTTCTCCGGTGGCTTCTCATAACTCTGGTAGTAATCCATCGGATTTAAACAACAAACCAACTCCACCACTGAAGGAGAATTCGGGGTCACTGCTGCGTTTTAAAGGATCAGATGTTGGGTTGGTATGTCTCGGTATTGTTACGAGTATGATTTTTAGTAACTTTAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

197

Amino Acids

21.75

Weight (kDa)

9.13

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 117	1e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	412
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	2 cut(s)	268, 512
AfaI	GTAC	3 cut(s)	182, 260, 414
AgsI	TTSAA	3 cut(s)	127, 178, 293
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	535
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	135, 372
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	499
Asp718I	GGTACC	1 cut(s)	412
AspS9I	GGNCC	3 cut(s)	135, 302, 373
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	3 cut(s)	89, 287, 466
BceAI	ACGGC	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	554
BisI	GCNGC	2 cut(s)	322, 515
BlsI	GCNGC	2 cut(s)	323, 516
BmcAI	AGTACT	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	135, 302, 373
BmiI	GGNNCC	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	2 cut(s)	299, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	2 cut(s)	137, 414
Bse3DI	GCAATG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	137, 414
BseXI	GCAGC	1 cut(s)	501
BshFI	GGCC	2 cut(s)	137, 374
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	3 cut(s)	138, 300, 428
BsmAI	GTCTC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	137, 374
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	527
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	2 cut(s)	137, 374
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	137, 414
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	527
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	114, 258, 272
BstDEI	CTNAG	2 cut(s)	117, 377
BstDSI	CCRYGG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	530
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	527
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	137, 374
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	4 cut(s)	130, 407, 488, 509
CaiI	CAGNNNCTG	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	135, 302, 373
Csp6I	GTAC	3 cut(s)	181, 259, 413
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	57, 137, 192, 374, 434
CviKI_1	RGCY	5 cut(s)	57, 137, 192, 374, 434
CviQI	GTAC	3 cut(s)	181, 259, 413
DdeI	CTNAG	2 cut(s)	117, 377
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
DraI	TTTAAA	2 cut(s)	468, 523
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	268, 512
EcoRI	GAATTC	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	1 cut(s)	46
FaiI	YATR	6 cut(s)	20, 44, 147, 441, 547, 569
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	322, 515
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	322, 515
GluI	GCNGC	2 cut(s)	322, 515
HaeIII	GGCC	2 cut(s)	137, 374
HapII	CCGG	3 cut(s)	138, 300, 428
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	3 cut(s)	138, 300, 428
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	6 cut(s)	118, 287, 351, 391, 463, 532
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	135, 432, 487
HpyCH4III	ACNGT	3 cut(s)	114, 258, 272
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	117, 377
Hsp92II	CATG	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	302, 409
LpnPI	CCDG	7 cut(s)	118, 140, 151, 313, 395, 432, 441
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	391
MaeIII	GTNAC	5 cut(s)	211, 272, 507, 559, 578
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	2 cut(s)	233, 274
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	1 cut(s)	427
MseI	TTAA	3 cut(s)	263, 467, 522
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	138, 300, 428
NdeII	GATC	1 cut(s)	527
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	272, 507
PkrI	GCNGC	2 cut(s)	323, 516
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	135, 302, 373
PstNI	CAGNNNCTG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	182, 260, 414
RsaNI	GTAC	3 cut(s)	181, 259, 413
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	263, 467, 522
SatI	GCNGC	2 cut(s)	322, 515
Sau3AI	GATC	1 cut(s)	527
Sau96I	GGNCC	3 cut(s)	135, 302, 373
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	3 cut(s)	59, 152, 159
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	114, 258, 272
TasI	AATT	1 cut(s)	499
TatI	WGTACW	2 cut(s)	180, 258
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	3 cut(s)	263, 467, 522
Tru9I	TTAA	3 cut(s)	263, 467, 522
TscAI	CASTG	4 cut(s)	137, 414, 495, 516
TseFI	GTSAC	2 cut(s)	272, 507
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	2 cut(s)	272, 507
TspDTI	ATGAA	2 cut(s)	31, 304
TspRI	CASTG	4 cut(s)	137, 414, 495, 516
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	499
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.