RchiOBHm_Chr5g0033171

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004635
Physical Location & Seq
Forward (+)
26967612 .. 26969610
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31228

Sequence Viewer

Length: 777 bp
ATGGAGTTGGGGAGATTTCTATGCCTGTTCTTGGTTTGCTTGACGTGTTTTGTCTCTGCAACAGAGGGATACAAGTTTTACGTCGGTGGGAGAGACGGGTGGGTTTTGAAACCATCTGAGAGTTACAACCACTGGGCTGAGAGGAATAGGTTCCTAGTCAATGACACTCTCTATTTCAAGTACAACAAAGGATCGGACTCGGTTCTGGTGGTGAACAAGGACAGTTTCTACAACTGCAACACAAGCAACCCTATTCATAAACTGGATGACGGCAATTCCGAGTTCAAGTTTGATAGGTCTGGACCATTCTATTTCATCAGTGGACAAGATGGTAACTGCGCAAAGGGTCAGAAACTAATTATCATAGTTCTCGCCGTCAGGCACCGTCAAACTCCTCCGGCTCAGCCTCCCACGGCGGCGCCACCACAAGGCTCAGCGCCAGCACCTGTACCATCAAAAGGCTCAGCCCCAGCTGCTGCACCATCAGGTCCATCATCATCACCCTCACTTGCGCCAAGTACTACCCCAATAACATCTCCAGTTCCAGCTCCGGCCGCCGCTACTACTCCAACCTCGTCTCCTCCTAGCCCGGTGGGGCCCGAACCGACACCGTCTGGAGCTGCTCCTTCCGGGGAAGTGACGTCACCTCCACCGGGGTCGAACCAGGCATCGACAGCACCGAATCAAAACGGAGCGTATGGTGTAACGGCATCGAGCGTGTTGGTGTCTTCGGTTGTTGTTTTGGTCAGTTTGGCTCTTATGAGCAGCTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

258

Amino Acids

26.87

Weight (kDa)

8.24

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 3.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 644
Acc16I TGCGCA 1 cut(s) 340
AccB1I GGYRCC 2 cut(s) 381, 418
AciI CCGC 3 cut(s) 416, 555, 558
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 552
AcyI GRCGYC 2 cut(s) 419, 641
AfaI GTAC 3 cut(s) 182, 450, 520
AfiI CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 3 cut(s) 109, 178, 286
AjiI CACGTC 1 cut(s) 45
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 4 cut(s) 473, 548, 620, 768
AluI AGCT 4 cut(s) 473, 548, 620, 768
Alw26I GTCTC 3 cut(s) 58, 87, 582
AlwI GGATC 1 cut(s) 199
AlwNI CAGNNNCTG 2 cut(s) 446, 476
AoxI GGCC 2 cut(s) 552, 596
ApaI GGGCCC 1 cut(s) 600
ApeKI GCWGC 4 cut(s) 473, 476, 620, 765
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 4 cut(s) 341, 421, 439, 514
AspS9I GGNCC 4 cut(s) 302, 488, 596, 597
AsuC2I CCSGG 3 cut(s) 590, 631, 654
AsuHPI GGTGA 3 cut(s) 223, 492, 636
AvaII GGWCC 2 cut(s) 302, 488
BaeGI GKGCMC 1 cut(s) 600
BanI GGYRCC 2 cut(s) 381, 418
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 460, 463, 607
BccI CCATC 5 cut(s) 121, 323, 460, 490, 499
BceAI ACGGC 4 cut(s) 286, 359, 429, 723
BciT130I CCWGG 1 cut(s) 665
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 3 cut(s) 590, 631, 654
BcoDI GTCTC 3 cut(s) 58, 87, 582
BfaI CTAG 2 cut(s) 155, 585
BfoI RGCGCY 2 cut(s) 422, 440
BfuI GTATCC 1 cut(s) 62
BisI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
BlpI GCTNAGC 3 cut(s) 402, 433, 463
BlsI GCNGC 7 cut(s) 418, 475, 478, 556, 559, 622, 767
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 4 cut(s) 590, 631, 654, 665
Bme18I GGWCC 2 cut(s) 302, 488
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 4 cut(s) 302, 488, 596, 597
BmiI GGNNCC 5 cut(s) 152, 383, 420, 597, 598
BmrFI CCNGG 4 cut(s) 590, 631, 654, 665
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 677, 719
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 720
BpmI CTGGAG 2 cut(s) 522, 636
Bpu1102I GCTNAGC 3 cut(s) 402, 433, 463
BpuMI CCSGG 3 cut(s) 590, 631, 654
BsaHI GRCGYC 2 cut(s) 419, 641
BsaJI CCNNGG 3 cut(s) 411, 630, 653
BsaXI ACNNNNNCTCC 4 cut(s) 562, 592, 631, 661
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
Bse1I ACTGG 3 cut(s) 137, 267, 539
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 3 cut(s) 411, 630, 653
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
BseMII CTCAG 5 cut(s) 108, 129, 416, 447, 477
BseNI ACTGG 3 cut(s) 137, 267, 539
BseRI GAGGAG 2 cut(s) 384, 570
BseSI GKGCMC 1 cut(s) 600
BseX3I CGGCCG 1 cut(s) 552
BseXI GCAGC 3 cut(s) 460, 463, 607
BseYI CCCAGC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 555
BshFI GGCC 2 cut(s) 554, 598
BshNI GGYRCC 2 cut(s) 381, 418
BsiEI CGRYCG 1 cut(s) 555
BsiSI CCGG 5 cut(s) 398, 551, 590, 630, 653
BslI CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
BsmAI GTCTC 3 cut(s) 58, 87, 582
BsmBI CGTCTC 2 cut(s) 87, 582
BsnI GGCC 2 cut(s) 554, 598
Bsp120I GGGCCC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 1 cut(s) 191
Bsp1720I GCTNAGC 3 cut(s) 402, 433, 463
BspACI CCGC 3 cut(s) 416, 555, 558
BspANI GGCC 2 cut(s) 554, 598
BspCNI CTCAG 5 cut(s) 109, 130, 415, 446, 476
BspLI GGNNCC 5 cut(s) 152, 383, 420, 597, 598
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 2 cut(s) 381, 418
BsrI ACTGG 3 cut(s) 137, 267, 539
BssECI CCNNGG 3 cut(s) 411, 630, 653
BssMI GATC 1 cut(s) 191
BssNI GRCGYC 2 cut(s) 419, 641
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 224, 386, 612
BstACI GRCGYC 2 cut(s) 419, 641
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 5 cut(s) 117, 138, 402, 433, 463
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 271
BstH2I RGCGCY 2 cut(s) 422, 440
BstHHI GCGC 4 cut(s) 341, 421, 439, 514
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 3 cut(s) 58, 87, 582
BstMBI GATC 1 cut(s) 191
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 4 cut(s) 243, 473, 554, 674
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 4 cut(s) 588, 629, 652, 663
BstSLI GKGCMC 1 cut(s) 600
BstV1I GCAGC 3 cut(s) 460, 463, 607
BstV2I GAAGAC 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 552
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 554, 598
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 130, 325
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 2 cut(s) 446, 476
CfoI GCGC 4 cut(s) 341, 421, 439, 514
Cfr13I GGNCC 4 cut(s) 302, 488, 596, 597
Csp6I GTAC 3 cut(s) 181, 449, 519
CviQI GTAC 3 cut(s) 181, 449, 519
DdeI CTNAG 5 cut(s) 117, 138, 402, 433, 463
DinI GGCGCC 1 cut(s) 420
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 552
EagI CGGCCG 1 cut(s) 552
EclXI CGGCCG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 302, 488
Eco52I CGGCCG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
Esp3I CGTCTC 2 cut(s) 87, 582
FaiI YATR 5 cut(s) 22, 258, 365, 699, 761
Fnu4HI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
FspBI CTAG 2 cut(s) 155, 585
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 4 cut(s) 340, 420, 438, 513
GluI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 2 cut(s) 522, 636
HaeII RGCGCY 2 cut(s) 422, 440
HaeIII GGCC 2 cut(s) 554, 598
HapII CCGG 5 cut(s) 398, 551, 590, 630, 653
HhaI GCGC 4 cut(s) 341, 421, 439, 514
Hin1I GRCGYC 2 cut(s) 419, 641
Hin6I GCGC 4 cut(s) 339, 419, 437, 512
HinP1I GCGC 4 cut(s) 339, 419, 437, 512
HinfI GANTC 2 cut(s) 197, 682
HpaII CCGG 5 cut(s) 398, 551, 590, 630, 653
HphI GGTGA 3 cut(s) 223, 492, 636
Hpy166II GTNNAC 2 cut(s) 214, 323
Hpy188I TCNGA 4 cut(s) 118, 196, 280, 351
Hpy188III TCNNGA 2 cut(s) 300, 615
Hpy8I GTNNAC 2 cut(s) 214, 323
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 636
HpyCH4III ACNGT 3 cut(s) 224, 386, 612
HpyCH4IV ACGT 3 cut(s) 44, 81, 641
HpyCH4V TGCA 3 cut(s) 59, 237, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 243, 473, 554, 674
HpyF3I CTNAG 5 cut(s) 117, 138, 402, 433, 463
HpySE526I ACGT 3 cut(s) 44, 81, 641
Hsp92I GRCGYC 2 cut(s) 419, 641
HspAI GCGC 4 cut(s) 339, 419, 437, 512
KasI GGCGCC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 4 cut(s) 553, 617, 628, 692
Lsp1109I GCAGC 3 cut(s) 460, 463, 607
LweI GCATC 2 cut(s) 677, 719
MaeI CTAG 2 cut(s) 155, 585
MaeII ACGT 3 cut(s) 44, 81, 641
MaeIII GTNAC 5 cut(s) 122, 332, 637, 642, 703
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 1 cut(s) 720
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 2 cut(s) 274, 357
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 8 cut(s) 58, 135, 405, 417, 514, 583, 591, 657
MroXI GAANNNNTTC 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 5 cut(s) 398, 551, 590, 630, 653
MspR9I CCNGG 4 cut(s) 590, 631, 654, 665
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 4 cut(s) 243, 473, 554, 674
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 3 cut(s) 590, 631, 654
NdeII GATC 1 cut(s) 191
NlaIV GGNNCC 5 cut(s) 152, 383, 420, 597, 598
NmuCI GTSAC 2 cut(s) 637, 642
NsbI TGCGCA 1 cut(s) 340
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 677
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 682
PflFI GACNNNGTC 1 cut(s) 610
PkrI GCNGC 7 cut(s) 418, 475, 478, 556, 559, 622, 767
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 5 cut(s) 152, 383, 420, 597, 598
PspOMI GGGCCC 1 cut(s) 596
PspPI GGNCC 4 cut(s) 302, 488, 596, 597
PstNI CAGNNNCTG 2 cut(s) 446, 476
PsyI GACNNNGTC 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 3 cut(s) 182, 450, 520
RsaNI GTAC 3 cut(s) 181, 449, 519
SatI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 4 cut(s) 302, 488, 596, 597
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 590, 631, 654, 665
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 2 cut(s) 677, 719
SfoI GGCGCC 1 cut(s) 420
SinI GGWCC 2 cut(s) 302, 488
Sse9I AATT 2 cut(s) 274, 357
SsiI CCGC 3 cut(s) 416, 555, 558
SspDI GGCGCC 1 cut(s) 418
SspMI CTAG 2 cut(s) 155, 585
StyD4I CCNGG 4 cut(s) 588, 629, 652, 663
TaaI ACNGT 3 cut(s) 224, 386, 612
TaiI ACGT 3 cut(s) 47, 84, 644
TaqI TCGA 3 cut(s) 659, 671, 713
TasI AATT 2 cut(s) 274, 357
TatI WGTACW 2 cut(s) 180, 518
TauI GCSGC 3 cut(s) 419, 557, 560
TfiI GAWTC 1 cut(s) 682
TscAI CASTG 2 cut(s) 137, 325
TseFI GTSAC 2 cut(s) 637, 642
TseI GCWGC 4 cut(s) 473, 476, 620, 765
Tsp45I GTSAC 2 cut(s) 637, 642
TspDTI ATGAA 2 cut(s) 245, 304
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 137, 325
Tth111I GACNNNGTC 1 cut(s) 610
VpaK11BI GGWCC 2 cut(s) 302, 488
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 2 cut(s) 155, 585
ZraI GACGTC 1 cut(s) 642
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.