Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

15678647 .. 15679652

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTTTTTGTCAAAATGACTGATGTTTACTTGATGATTGTGATGTTGATGGGTTTGGGGTTTAGTATAGAGTTATCAAATGGGCACAAGTTCTATGTTGGTGGGAGAGATGGTTGGGTCCTTACTCCTTCCGAGGATTATTCTCATTGGTCTCACCGAAACCGGTTTCAAGTCAACGACACTCTTTATTTTAAGTACGTGAAGGGAAAAGATTCAGTGTTGGAGGTGAGTGAAAAAGAGTACAACACATGCAACACGACTCACCCTTTGACTTCCCTCTCAGACGGTGACTCTCTCTTCCTACTTAGCCGCTCAGACCCATTCTTCTTCGTCAGCGGCAACTCCGGATCCTGTCTCAAAGGTCAAAAGCTAGCCGTAACGGTCATGTCTACCGGACACCACAGCCACACTCCTCGTCATCCCTCTCCTTCCCCTTCCCCCTCAGCGTCTCCGGTCCGTAAGGCTTTGTTATCGCCAGCGCCTATTCCGGTCCATAAGGCTTTGTCATCGCCAGCGCCTACTCCGGGAGTGGATCCCTCCCATTCAGAAGTTCTTGCGCCGGCTCCAGGGCCCGCCGCAGCTGTTCGCAATTTGGCCGGTTCCGTTGCTCCGGGAGTGATTTCTCTAGGCTTGGTTCTTGTGATTATGATAAGTTCCATGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

221

Amino Acids

23.66

Weight (kDa)

8.54

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	39 - 122	6.1e-19	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	4 cut(s)	310, 336, 573, 576
AclWI	GGATC	4 cut(s)	342, 355, 527, 540
AcoI	YGGCCR	1 cut(s)	594
AfaI	GTAC	2 cut(s)	197, 242
AfiI	CCNNNNNNNGG	2 cut(s)	524, 566
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	2 cut(s)	370, 581
AluI	AGCT	2 cut(s)	370, 581
Alw26I	GTCTC	3 cut(s)	156, 359, 453
AlwI	GGATC	4 cut(s)	342, 355, 527, 540
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	2 cut(s)	569, 594
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	578
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AsiGI	ACCGGT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	3 cut(s)	481, 517, 559
AspS9I	GGNCC	5 cut(s)	118, 454, 490, 569, 570
AsuC2I	CCSGG	2 cut(s)	525, 612
AsuHPI	GGTGA	4 cut(s)	146, 238, 254, 299
AsuNHI	GCTAGC	1 cut(s)	370
AvaII	GGWCC	3 cut(s)	118, 454, 490
BaeGI	GKGCMC	2 cut(s)	87, 573
BamHI	GGATCC	2 cut(s)	347, 532
BanII	GRGCYC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	590
BccI	CCATC	2 cut(s)	43, 104
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	525, 612
BcoDI	GTCTC	3 cut(s)	156, 359, 453
BfaI	CTAG	2 cut(s)	371, 626
BfoI	RGCGCY	2 cut(s)	482, 518
BisI	GCNGC	4 cut(s)	310, 337, 576, 579
BlsI	GCNGC	4 cut(s)	311, 338, 577, 580
Bme1390I	CCNGG	3 cut(s)	525, 567, 612
Bme18I	GGWCC	3 cut(s)	118, 454, 490
BmgT120I	GGNCC	5 cut(s)	118, 454, 490, 569, 570
BmiI	GGNNCC	6 cut(s)	119, 349, 534, 564, 571, 601
BmrFI	CCNGG	3 cut(s)	525, 567, 612
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	442
BpuMI	CCSGG	2 cut(s)	525, 612
BsaAI	YACGTR	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	132, 566, 657
BsaWI	WCCGGW	5 cut(s)	162, 344, 392, 451, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 566
Bse118I	RCCGGY	3 cut(s)	162, 559, 596
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	132, 566, 657
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	524, 566
BseMII	CTCAG	3 cut(s)	294, 327, 456
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	2 cut(s)	87, 573
BseXI	GCAGC	1 cut(s)	590
BshFI	GGCC	2 cut(s)	571, 596
BshTI	ACCGGT	1 cut(s)	162
BsiSI	CCGG	9 cut(s)	163, 345, 393, 452, 488, 524, 560, 597, 611
BslI	CCNNNNNNNGG	2 cut(s)	524, 566
BsmAI	GTCTC	3 cut(s)	156, 359, 453
BsmBI	CGTCTC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	571, 596
Bso31I	GGTCTC	1 cut(s)	156
Bsp120I	GGGCCC	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	87, 573
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	347, 532
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	4 cut(s)	310, 336, 573, 576
BspANI	GGCC	2 cut(s)	571, 596
BspCNI	CTCAG	3 cut(s)	293, 326, 455
BspEI	TCCGGA	1 cut(s)	344
BspLI	GGNNCC	6 cut(s)	119, 349, 534, 564, 571, 601
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	4 cut(s)	342, 355, 527, 540
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	3 cut(s)	162, 559, 596
BssAI	RCCGGY	3 cut(s)	162, 559, 596
BssECI	CCNNGG	3 cut(s)	132, 566, 657
BssMI	GATC	2 cut(s)	347, 532
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	287, 382
Bst6I	CTCTTC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	5 cut(s)	372, 477, 513, 561, 573
BstDEI	CTNAG	4 cut(s)	280, 305, 313, 442
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	2 cut(s)	482, 518
BstHHI	GCGC	3 cut(s)	481, 517, 559
BstKTI	GATC	2 cut(s)	350, 535
BstMAI	GTCTC	3 cut(s)	156, 359, 453
BstMBI	GATC	2 cut(s)	347, 532
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	523, 565, 610
BstSLI	GKGCMC	2 cut(s)	87, 573
BstV1I	GCAGC	1 cut(s)	590
BstX2I	RGATCY	2 cut(s)	347, 532
BstYI	RGATCY	2 cut(s)	347, 532
BsuRI	GGCC	2 cut(s)	571, 596
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	5 cut(s)	372, 477, 513, 561, 573
CfoI	GCGC	3 cut(s)	481, 517, 559
Cfr10I	RCCGGY	3 cut(s)	162, 559, 596
Cfr13I	GGNCC	5 cut(s)	118, 454, 490, 569, 570
CpoI	CGGWCCG	1 cut(s)	454
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	196, 241
CspAI	ACCGGT	1 cut(s)	162
CspI	CGGWCCG	1 cut(s)	454
CviAII	CATG	3 cut(s)	249, 385, 658
CviQI	GTAC	2 cut(s)	196, 241
DdeI	CTNAG	4 cut(s)	280, 305, 313, 442
DpnI	GATC	2 cut(s)	349, 534
DpnII	GATC	2 cut(s)	347, 532
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	3 cut(s)	118, 454, 490
EcoO109I	RGGNCCY	2 cut(s)	118, 569
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	3 cut(s)	252, 388, 661
FaiI	YATR	7 cut(s)	68, 96, 250, 386, 495, 647, 659
FatI	CATG	3 cut(s)	248, 384, 657
FauI	CCCGC	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	310, 337, 576, 579
FokI	GGATG	1 cut(s)	405
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	4 cut(s)	310, 337, 576, 579
FspBI	CTAG	2 cut(s)	371, 626
GlaI	GCGC	3 cut(s)	480, 516, 558
GluI	GCNGC	4 cut(s)	310, 337, 576, 579
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	2 cut(s)	482, 518
HaeIII	GGCC	2 cut(s)	571, 596
HapII	CCGG	9 cut(s)	163, 345, 393, 452, 488, 524, 560, 597, 611
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	3 cut(s)	481, 517, 559
Hin1II	CATG	3 cut(s)	252, 388, 661
Hin6I	GCGC	3 cut(s)	479, 515, 557
HinP1I	GCGC	3 cut(s)	479, 515, 557
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	212, 259, 290
HpaII	CCGG	9 cut(s)	163, 345, 393, 452, 488, 524, 560, 597, 611
HphI	GGTGA	4 cut(s)	146, 238, 254, 299
Hpy166II	GTNNAC	3 cut(s)	28, 175, 390
Hpy188I	TCNGA	4 cut(s)	133, 283, 316, 547
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	3 cut(s)	28, 175, 390
HpyAV	CCTTC	4 cut(s)	138, 196, 438, 444
HpyCH4III	ACNGT	2 cut(s)	287, 382
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	252
HpyF3I	CTNAG	4 cut(s)	280, 305, 313, 442
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	252, 388, 661
HspAI	GCGC	3 cut(s)	479, 515, 557
Kpn2I	TCCGGA	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	347, 532
LmnI	GCTCC	2 cut(s)	568, 613
Lsp1109I	GCAGC	1 cut(s)	590
MaeI	CTAG	2 cut(s)	371, 626
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	287, 376
MalI	GATC	2 cut(s)	349, 534
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	2 cut(s)	347, 532
MboII	GAAGA	3 cut(s)	289, 316, 319
MflI	RGATCY	2 cut(s)	347, 532
MhlI	GDGCHC	2 cut(s)	87, 573
MluCI	AATT	1 cut(s)	589
MlyI	GAGTC	2 cut(s)	253, 284
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	127, 217, 287, 423, 433, 451, 547
MroI	TCCGGA	1 cut(s)	344
MroNI	GCCGGC	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	336, 581
MspI	CCGG	9 cut(s)	163, 345, 393, 452, 488, 524, 560, 597, 611
MspR9I	CCNGG	3 cut(s)	525, 567, 612
MvaI	CCWGG	1 cut(s)	567
NaeI	GCCGGC	1 cut(s)	561
NciI	CCSGG	2 cut(s)	525, 612
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	2 cut(s)	347, 532
NgoMIV	GCCGGC	1 cut(s)	559
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	252, 388, 661
NlaIV	GGNNCC	6 cut(s)	119, 349, 534, 564, 571, 601
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	212
PfoI	TCCNGGA	2 cut(s)	523, 610
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	311, 338, 577, 580
PleI	GAGTC	2 cut(s)	253, 284
PpsI	GAGTC	2 cut(s)	253, 284
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	6 cut(s)	119, 349, 534, 564, 571, 601
PspOMI	GGGCCC	1 cut(s)	569
PspPI	GGNCC	5 cut(s)	118, 454, 490, 569, 570
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	347, 532
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	197, 242
RsaNI	GTAC	2 cut(s)	196, 241
Rsr2I	CGGWCCG	1 cut(s)	454
RsrII	CGGWCCG	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	4 cut(s)	310, 337, 576, 579
Sau3AI	GATC	2 cut(s)	347, 532
Sau96I	GGNCC	5 cut(s)	118, 454, 490, 569, 570
SchI	GAGTC	2 cut(s)	253, 284
ScrFI	CCNGG	3 cut(s)	525, 567, 612
SduI	GDGCHC	2 cut(s)	87, 573
SetI	ASST	5 cut(s)	201, 228, 364, 372, 583
SinI	GGWCC	3 cut(s)	118, 454, 490
Sse9I	AATT	1 cut(s)	589
SsiI	CCGC	4 cut(s)	310, 336, 573, 576
SspMI	CTAG	2 cut(s)	371, 626
StyD4I	CCNGG	3 cut(s)	523, 565, 610
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	287, 382
TaiI	ACGT	1 cut(s)	201
TasI	AATT	1 cut(s)	589
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	3 cut(s)	312, 339, 578
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	287
TspGWI	ACGGA	2 cut(s)	446, 592
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	3 cut(s)	118, 454, 490
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	371, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.