Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

31244277 .. 31245027

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1245000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGTCTGAGAGACTATTTTTTAGCATTTTTCTTGTTATTTTGGTGGTGGCATTGGCAAGTAACTCTTCTCAAGCTTACAAGTTCCCTGTGGGTGGCAAAGATGGTTGGGTTTTAAACCCCTCCGAGAGCTTCAATCACTGGGCGGAAAGGCATAGGTTTCAGGTCAATGATACACTTTTTTTCAAGTACAAAAAAGGGTCAAATTCTGTGTTGGTGGTAGCAAAAGAGGATTACAACTCATGCAACACAAAAAACCCAAAACAGTGTTTAACAGATGGGGACTCAGTCTTCAAGTTCAACCGATCGGGACCATTTTTCTTCATCAGCGGCAATGCTGAAAATTGCCAAAAGGGTCAGAAGCTCATAGTAGTGGTTTTGGCCGTCAGAAACAAAACCCAACACCATACGGATTCTCCTTCTCCATCACCAGTAATTACTGATCCGCCTGCTGTCTCGCCATCTCCGGCGGCTTTGGAACCAAATGCACCAATACAGCCTCCGCAGCAGAATTCTGCACCGGGATCAGACGTTGCGTTAATGGTTTTCATATGTATAATTAGTATTGTTGTGAGTACTCTTGTTCTGGGTAACTTTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

202

Amino Acids

21.89

Weight (kDa)

8.69

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 120	3.6e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	146, 330, 446, 470, 503
AclWI	GGATC	2 cut(s)	437, 532
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	205, 511
AfaI	GTAC	2 cut(s)	191, 577
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	4 cut(s)	136, 187, 295, 301
AluBI	AGCT	3 cut(s)	77, 132, 364
AluI	AGCT	3 cut(s)	77, 132, 364
Alw26I	GTCTC	2 cut(s)	7, 460
AlwI	GGATC	2 cut(s)	437, 532
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	2 cut(s)	205, 511
AspS9I	GGNCC	1 cut(s)	311
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	4 cut(s)	98, 272, 433, 469
BceAI	ACGGC	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	7, 460
BisI	GCNGC	3 cut(s)	331, 471, 506
BlsI	GCNGC	3 cut(s)	332, 472, 507
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	312, 480
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	146, 431
Bse3DI	GCAATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	146, 431
BseXI	GCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	467, 521
BslFI	GGGAC	2 cut(s)	296, 324
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	7, 460
BsmFI	GGGAC	2 cut(s)	296, 324
BsnI	GGCC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	305, 442, 524
BspACI	CCGC	5 cut(s)	146, 330, 446, 470, 503
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	312, 480
BspPI	GGATC	2 cut(s)	437, 532
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	146, 431
BssMI	GATC	3 cut(s)	305, 442, 524
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	2 cut(s)	9, 286
BstKTI	GATC	3 cut(s)	308, 445, 527
BstMAI	GTCTC	2 cut(s)	7, 460
BstMBI	GATC	3 cut(s)	305, 442, 524
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	139, 272
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	190, 576
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	7 cut(s)	77, 132, 364, 383, 473, 499, 602
CviKI_1	RGCY	7 cut(s)	77, 132, 364, 383, 473, 499, 602
CviQI	GTAC	2 cut(s)	190, 576
DdeI	CTNAG	2 cut(s)	9, 286
DpnI	GATC	3 cut(s)	307, 444, 526
DpnII	GATC	3 cut(s)	305, 442, 524
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	2 cut(s)	161, 435
Eco47I	GGWCC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	511
FaeI	CATG	1 cut(s)	246
FaiI	YATR	7 cut(s)	156, 244, 368, 408, 551, 553, 557
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FaqI	GGGAC	2 cut(s)	296, 324
FatI	CATG	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	551
Fnu4HI	GCNGC	3 cut(s)	331, 471, 506
Fsp4HI	GCNGC	3 cut(s)	331, 471, 506
GluI	GCNGC	3 cut(s)	331, 471, 506
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	2 cut(s)	467, 521
Hin1II	CATG	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	284, 413
HpaII	CCGG	2 cut(s)	467, 521
HphI	GGTGA	1 cut(s)	420
Hpy188I	TCNGA	5 cut(s)	10, 127, 360, 389, 529
Hpy188III	TCNNGA	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	246, 488, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	2 cut(s)	9, 286
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	305, 442, 524
LpnPI	CCDG	8 cut(s)	102, 127, 149, 444, 462, 480, 534, 572
Lsp1109I	GCAGC	1 cut(s)	517
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	62, 590
MalI	GATC	3 cut(s)	307, 444, 526
MboI	GATC	3 cut(s)	305, 442, 524
MboII	GAAGA	3 cut(s)	60, 283, 313
MluCI	AATT	5 cut(s)	205, 343, 435, 511, 558
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	133, 223, 510
MseI	TTAA	3 cut(s)	116, 272, 539
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	2 cut(s)	467, 521
MspR9I	CCNGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	505
NciI	CCSGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	3 cut(s)	305, 442, 524
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	2 cut(s)	312, 480
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	332, 472, 507
Ple19I	CGATCG	1 cut(s)	308
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	312, 480
PspPI	GGNCC	1 cut(s)	311
PsyI	GACNNNGTC	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	308
RsaI	GTAC	2 cut(s)	191, 577
RsaNI	GTAC	2 cut(s)	190, 576
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	116, 272, 539
SatI	GCNGC	3 cut(s)	331, 471, 506
Sau3AI	GATC	3 cut(s)	305, 442, 524
Sau96I	GGNCC	1 cut(s)	311
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	522
SetI	ASST	6 cut(s)	79, 134, 161, 168, 366, 534
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	5 cut(s)	205, 343, 435, 511, 558
SsiI	CCGC	5 cut(s)	146, 330, 446, 470, 503
StyD4I	CCNGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	534
TasI	AATT	5 cut(s)	205, 343, 435, 511, 558
TatI	WGTACW	2 cut(s)	189, 575
TauI	GCSGC	2 cut(s)	333, 473
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	3 cut(s)	116, 272, 539
Tru9I	TTAA	3 cut(s)	116, 272, 539
TscAI	CASTG	2 cut(s)	146, 272
TseI	GCWGC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	313, 538
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	2 cut(s)	146, 272
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	205, 511
ZrmI	AGTACT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.