Rh7AG371400

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004635
Physical Location & Seq
Forward (+)
47899988 .. 47900785
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG371400.1

Sequence Viewer

Length: 594 bp
ATGGGGTCTAAAAGATGTATGAGCGTTTTGGTTGTCATTTTCATGGCGTTGGTCAGCTATTCTCAAGCACACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAACCCGTCTGGGAACTTCAATCACTGGGCCGGAAGGCATAGGTTTCAGGTCAATGATACGCTCTTTTTCAAGTACAAAAAGGGTTCAAACTCTATCTTGGTTGTAACAAAAGAAGACTACTACTCGTGCAACAACAACAATCCAATAGAGTCCTTAACAGATGGTGACTCCGTCTTCAGATTTGAACGCTCCGGTCCTTTTTTTTTCATCAGCGGCAATGCCGACCATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCTTAAGACACAAATCTGACCACGGCGATGCTCCACTGGTACCCTCTCCTTCTCCGGTGGCTTCTCCTAACTCTGGTAGTAATCCATCGGATTTAAACAACAAACCAACTCCACCACTGAAGGAGAATTCGGGGTCAGTGCTGCTTTTTAAAGGATCAGATGTTGGGTTGGTATGTCTTAGTATTGGTACGAGTATGATTTTTAGTAACTTTAGGGTTTGA

Protein Analysis

197

Amino Acids

21.56

Weight (kDa)

9.1

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 2.1e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 1 cut(s) 321
AclWI GGATC 1 cut(s) 535
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 2 cut(s) 268, 512
AfaI GTAC 3 cut(s) 182, 414, 562
AfiI CCNNNNNNNGG 1 cut(s) 446
AflII CTTAAG 1 cut(s) 376
AgsI TTSAA 4 cut(s) 127, 178, 195, 293
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AlwI GGATC 1 cut(s) 535
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 2 cut(s) 135, 372
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 499
Asp718I GGTACC 1 cut(s) 412
AspS9I GGNCC 2 cut(s) 135, 302
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 412
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 228, 274
BbvI GCAGC 1 cut(s) 501
BccI CCATC 3 cut(s) 89, 263, 466
BceAI ACGGC 1 cut(s) 412
BfrI CTTAAG 1 cut(s) 376
BisI GCNGC 2 cut(s) 322, 515
BlsI GCNGC 2 cut(s) 323, 516
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 135, 302
BmiI GGNNCC 1 cut(s) 414
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 2 cut(s) 228, 274
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 2 cut(s) 299, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 137, 414
Bse3DI GCAATG 2 cut(s) 331, 334
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 2 cut(s) 331, 334
BseNI ACTGG 2 cut(s) 137, 414
BseXI GCAGC 1 cut(s) 501
BshFI GGCC 2 cut(s) 137, 374
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 3 cut(s) 138, 300, 428
BslI CCNNNNNNNGG 1 cut(s) 446
BsnI GGCC 2 cut(s) 137, 374
Bsp143I GATC 1 cut(s) 527
BspACI CCGC 1 cut(s) 321
BspANI GGCC 2 cut(s) 137, 374
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 331, 334
BsrI ACTGG 2 cut(s) 137, 414
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 1 cut(s) 527
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 1 cut(s) 394
BstKTI GATC 1 cut(s) 530
BstMBI GATC 1 cut(s) 527
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 2 cut(s) 228, 274
BsuRI GGCC 2 cut(s) 137, 374
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 414
BtsIMutI CAGTG 4 cut(s) 130, 407, 488, 516
CaiI CAGNNNCTG 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 135, 302
Csp6I GTAC 3 cut(s) 181, 413, 561
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 57, 137, 374, 434
CviKI_1 RGCY 4 cut(s) 57, 137, 374, 434
CviQI GTAC 3 cut(s) 181, 413, 561
DdeI CTNAG 1 cut(s) 551
DpnI GATC 1 cut(s) 529
DpnII GATC 1 cut(s) 527
DraI TTTAAA 2 cut(s) 468, 523
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 268, 512
EcoRI GAATTC 1 cut(s) 499
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 20, 44, 147, 547, 569
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 322, 515
Fsp4HI GCNGC 2 cut(s) 322, 515
GluI GCNGC 2 cut(s) 322, 515
HaeIII GGCC 2 cut(s) 137, 374
HapII CCGG 3 cut(s) 138, 300, 428
Hin1II CATG 1 cut(s) 46
HinfI GANTC 2 cut(s) 257, 275
HpaII CCGG 3 cut(s) 138, 300, 428
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 5 cut(s) 287, 351, 391, 463, 532
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 135, 432, 487
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 551
Hsp92II CATG 1 cut(s) 46
KpnI GGTACC 1 cut(s) 416
Kzo9I GATC 1 cut(s) 527
LmnI GCTCC 2 cut(s) 302, 409
LpnPI CCDG 8 cut(s) 102, 118, 140, 151, 313, 395, 432, 441
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 1 cut(s) 391
MaeIII GTNAC 3 cut(s) 211, 272, 578
MalI GATC 1 cut(s) 529
MboI GATC 1 cut(s) 527
MboII GAAGA 2 cut(s) 233, 274
MluCI AATT 1 cut(s) 499
MlyI GAGTC 2 cut(s) 266, 269
MnlI CCTC 1 cut(s) 427
MseI TTAA 4 cut(s) 263, 377, 467, 522
MslI CAYNNNNRTG 2 cut(s) 41, 399
MspA1I CMGCKG 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 376
MspI CCGG 3 cut(s) 138, 300, 428
NdeII GATC 1 cut(s) 527
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 272
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 323, 516
PleI GAGTC 2 cut(s) 265, 269
PpsI GAGTC 2 cut(s) 265, 269
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 2 cut(s) 135, 302
PstNI CAGNNNCTG 1 cut(s) 355
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 3 cut(s) 182, 414, 562
RsaNI GTAC 3 cut(s) 181, 413, 561
RseI CAYNNNNRTG 2 cut(s) 41, 399
SaqAI TTAA 4 cut(s) 263, 377, 467, 522
SatI GCNGC 2 cut(s) 322, 515
Sau3AI GATC 1 cut(s) 527
Sau96I GGNCC 2 cut(s) 135, 302
SchI GAGTC 2 cut(s) 266, 269
SetI ASST 3 cut(s) 59, 152, 159
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 41, 399
SmlI CTYRAG 2 cut(s) 63, 376
SmoI CTYRAG 2 cut(s) 63, 376
Sse9I AATT 1 cut(s) 499
SsiI CCGC 1 cut(s) 321
TasI AATT 1 cut(s) 499
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 4 cut(s) 263, 377, 467, 522
Tru9I TTAA 4 cut(s) 263, 377, 467, 522
TscAI CASTG 4 cut(s) 137, 414, 495, 516
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 31, 304
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 4 cut(s) 137, 414, 495, 516
Tth111I GACNNNGTC 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.