Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Forward (+)

19703091 .. 19703655

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGGTCTAAAAGATGTATGAGCGTTTTGGTTGTCGTTTTCATGGCGTTGGTCAGCTATTCTCAAGCACACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAACCCGTCTGAGAACTTCAATCACTGGGCCGGAAGGCATAGGTTTCAGGTCAATGATACGCTCTTTTTCAAGTACAAAAAGGGCTCAAACTCTGTCTTGGCTGTAACAAAAGAAGACTACTACTCGTGCAACAACAACAACCCAATACAGTACTTAACAGACGGTGACTCCGTCTTCAGATTTGAACGCTCCGGTCCTTTTTTTTCATCAGCGGCAATGCCGACGATTGCCAAAATGGTCAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

118

Amino Acids

13.44

Weight (kDa)

9.55

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 102	1.3e-15	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	2 cut(s)	182, 260
AgsI	TTSAA	3 cut(s)	127, 178, 293
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	135, 302
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	2 cut(s)	228, 274
BccI	CCATC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmcAI	AGTACT	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	135, 302
BmrI	ACTGGG	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	228, 274
BpuEI	CTTGAG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	138, 300
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	137
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	258, 272
BstDEI	CTNAG	1 cut(s)	117
BstV2I	GAAGAC	2 cut(s)	228, 274
BsuRI	GGCC	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	135, 302
Csp6I	GTAC	2 cut(s)	181, 259
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	57, 137, 192, 209
CviKI_1	RGCY	4 cut(s)	57, 137, 192, 209
CviQI	GTAC	2 cut(s)	181, 259
DdeI	CTNAG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	20, 44, 147
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	138, 300
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	138, 300
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	118, 287, 350
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	258, 272
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	4 cut(s)	118, 140, 151, 313
MaeIII	GTNAC	2 cut(s)	211, 272
MboII	GAAGA	2 cut(s)	233, 274
MhlI	GDGCHC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	269
MseI	TTAA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	138, 300
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	135, 302
PstNI	CAGNNNCTG	1 cut(s)	354
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	182, 260
RsaNI	GTAC	2 cut(s)	181, 259
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	135, 302
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	3 cut(s)	59, 152, 159
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SsiI	CCGC	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	258, 272
TatI	WGTACW	2 cut(s)	180, 258
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	31, 303
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	137
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.