Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

39153341 .. 39156554

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG366300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGGTCTAAAAGATGTATGAGCGTTTTGGTTGTCATTTTCATGGCGTTGGTCAGCTATTCTCAAGCACACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAACCCGTCTGAGAACTTCAATCACTGGGCCGGAAGGCATAGGTTTCAGGTCAATGATACGCTCTTTTTCAAGTACAAAAAGGGTTCAAACTCTATCTTGGTTGTAACAAAAGAAGACTACTACTCGTGCAACAACAACAACCCAATAGAGTCTTTAACAGATGGTGACTCCGTCTTCAGATTTGAACGCTCCGGTCCTTTTTTTTTCATCAGCGGCAATGCCGACGATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCTTAAGACACAAATCTGACCACGGCGATGCTCCACTGGTACCCTCTCCTTCTCCGGTGGCTTCTCCTAACTCTGGTAGTAATCCATCGGATTTAAACAACAAACCAACTCCACCACTGAAGGAGAATTCGGGATGTGCGGACATCATTTATGATCGTGAAAACGCGTGGGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

183

Amino Acids

20.29

Weight (kDa)

6.5

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 117	6.9e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	412
AccII	CGCG	1 cut(s)	539
AciI	CCGC	2 cut(s)	321, 512
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	2 cut(s)	268, 512
AfaI	GTAC	2 cut(s)	182, 414
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflII	CTTAAG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	127, 178, 195, 293
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	135, 372
ApoI	RAATTY	1 cut(s)	499
Asp718I	GGTACC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	135, 302
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	2 cut(s)	228, 274
BccI	CCATC	3 cut(s)	89, 263, 466
BceAI	ACGGC	1 cut(s)	412
BfrI	CTTAAG	1 cut(s)	376
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	135, 302
BmiI	GGNNCC	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	228, 274
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	2 cut(s)	299, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	137, 414
Bse3DI	GCAATG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	512
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	137, 414
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	137, 374
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	3 cut(s)	138, 300, 428
BslI	CCNNNNNNNGG	1 cut(s)	446
BsnI	GGCC	2 cut(s)	137, 374
Bsp143I	GATC	1 cut(s)	526
BspACI	CCGC	2 cut(s)	321, 512
BspANI	GGCC	2 cut(s)	137, 374
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	137, 414
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	512
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	1 cut(s)	529
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstUI	CGCG	1 cut(s)	539
BstV2I	GAAGAC	2 cut(s)	228, 274
BsuRI	GGCC	2 cut(s)	137, 374
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	512
BtsIMutI	CAGTG	3 cut(s)	130, 407, 488
CaiI	CAGNNNCTG	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	135, 302
Csp6I	GTAC	2 cut(s)	181, 413
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	57, 137, 374, 434
CviKI_1	RGCY	4 cut(s)	57, 137, 374, 434
CviQI	GTAC	2 cut(s)	181, 413
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
DraI	TTTAAA	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	268, 512
EcoRI	GAATTC	1 cut(s)	499
FaeI	CATG	1 cut(s)	46
FaiI	YATR	5 cut(s)	20, 44, 147, 525, 550
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	1 cut(s)	519
Fsp4HI	GCNGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	137, 374
HapII	CCGG	3 cut(s)	138, 300, 428
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	2 cut(s)	257, 275
HpaII	CCGG	3 cut(s)	138, 300, 428
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	5 cut(s)	118, 287, 351, 391, 463
Hpy188III	TCNNGA	2 cut(s)	504, 530
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	135, 432, 487
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	2 cut(s)	302, 409
LpnPI	CCDG	7 cut(s)	118, 140, 151, 313, 395, 432, 441
LweI	GCATC	1 cut(s)	391
MaeIII	GTNAC	2 cut(s)	211, 272
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	2 cut(s)	233, 274
MluCI	AATT	1 cut(s)	499
MluI	ACGCGT	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	266, 269
MnlI	CCTC	1 cut(s)	427
MseI	TTAA	3 cut(s)	263, 377, 467
MslI	CAYNNNNRTG	2 cut(s)	41, 399
MspA1I	CMGCKG	1 cut(s)	321
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	3 cut(s)	138, 300, 428
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	2 cut(s)	265, 269
PpsI	GAGTC	2 cut(s)	265, 269
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	2 cut(s)	135, 302
PstNI	CAGNNNCTG	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	182, 414
RsaNI	GTAC	2 cut(s)	181, 413
RseI	CAYNNNNRTG	2 cut(s)	41, 399
SaqAI	TTAA	3 cut(s)	263, 377, 467
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	2 cut(s)	135, 302
SchI	GAGTC	2 cut(s)	266, 269
SetI	ASST	3 cut(s)	59, 152, 159
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	41, 399
SmlI	CTYRAG	2 cut(s)	63, 376
SmoI	CTYRAG	2 cut(s)	63, 376
Sse9I	AATT	1 cut(s)	499
SsiI	CCGC	2 cut(s)	321, 512
TasI	AATT	1 cut(s)	499
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	3 cut(s)	263, 377, 467
Tru9I	TTAA	3 cut(s)	263, 377, 467
TscAI	CASTG	3 cut(s)	137, 414, 495
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	31, 304
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	3 cut(s)	137, 414, 495
Tth111I	GACNNNGTC	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.