Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

14907930 .. 14909080

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGTCTAAGAGACTATTTGTGAGCACGTTGCTTGTTATTTTGATGTTGGGGTTGGCTAGTAGCTCTTCTCAAGCTTACAAGTTCATTGTGGGTGGCAAAGATGGTTGGGTTTTGAGCCCTTCCGAGAACTTCAATCACTGGGCTGAAAGACATAGGTTTCAGGTCAATGATACGCTTCTTTTCAAGTACAAAAAAGGATCAGATTCTGTGTTGGTGGTAACAAAGGAGGATTATTTCTCATGCAACACAAAAACCTCAAAACAGTCCCTAACAGATGGTGACTCAATTTTCAAGTTTGAGCGGTCAGGTCCATTTTTCTTCATCAGTGGCAATGCTGAGAACTGCCAAAAAGGGCAGAAGCTGATAGTGGTGGTTTTGGCCGTCAGAAGCAAAACCCAACATACGCCACCCTCTGAGGCCCCTCCTTCTCCATCTTCGTCAGCTCCATCTCCACTTGTGGCTGATCCTCCTGCAGTCTCACCGTCTCCGCTGTCGGATTTGGACACAAATGCACCGTCACAGCCCCCGCTACCGCGGGAGAATTCAGCAGCTAGAGGATCAGACGTTGGGTTATTGGCTTTTATTTGTACTGTTATAAGTATTGGTGCAAGTACTGCGGTTTTGGGTAACTTTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

215

Amino Acids

22.91

Weight (kDa)

8.77

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	304
AccII	CGCG	1 cut(s)	538
AciI	CCGC	6 cut(s)	304, 491, 530, 536, 538, 620
AclWI	GGATC	3 cut(s)	208, 461, 568
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	544
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	191, 592, 616
AgsI	TTSAA	3 cut(s)	136, 187, 295
AluBI	AGCT	5 cut(s)	66, 77, 364, 446, 554
AluI	AGCT	5 cut(s)	66, 77, 364, 446, 554
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	7, 484, 492
AlwI	GGATC	3 cut(s)	208, 461, 568
AlwNI	CAGNNNCTG	2 cut(s)	209, 364
AoxI	GGCC	2 cut(s)	381, 420
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspS9I	GGNCC	2 cut(s)	311, 421
AsuHPI	GGTGA	2 cut(s)	293, 474
AvaII	GGWCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	4 cut(s)	98, 272, 442, 457
BceAI	ACGGC	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	7, 484, 492
BfaI	CTAG	2 cut(s)	60, 555
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmcAI	AGTACT	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	311, 421
BmiI	GGNNCC	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	330, 408
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	563
Bsh1236I	CGCG	1 cut(s)	538
BshFI	GGCC	2 cut(s)	383, 422
BsiHKAI	GWGCWC	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	3 cut(s)	7, 484, 492
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	383, 422
Bsp1286I	GDGCHC	2 cut(s)	29, 122
Bsp143I	GATC	3 cut(s)	200, 466, 560
BspACI	CCGC	6 cut(s)	304, 491, 530, 536, 538, 620
BspANI	GGCC	2 cut(s)	383, 422
BspCNI	CTCAG	2 cut(s)	331, 409
BspFNI	CGCG	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	208, 461, 568
BspQI	GCTCTTC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	3 cut(s)	200, 466, 560
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	4 cut(s)	267, 486, 519, 595
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstDEI	CTNAG	3 cut(s)	9, 339, 417
BstDSI	CCRYGG	1 cut(s)	536
BstFNI	CGCG	1 cut(s)	538
BstKTI	GATC	3 cut(s)	203, 469, 563
BstMAI	GTCTC	3 cut(s)	7, 484, 492
BstMBI	GATC	3 cut(s)	200, 466, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	383, 422
BtgI	CCRYGG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	139, 334
CaiI	CAGNNNCTG	2 cut(s)	209, 364
Cfr13I	GGNCC	2 cut(s)	311, 421
Cfr42I	CCGCGG	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	190, 591, 615
CviAII	CATG	1 cut(s)	243
CviQI	GTAC	3 cut(s)	190, 591, 615
DdeI	CTNAG	3 cut(s)	9, 339, 417
DpnI	GATC	3 cut(s)	202, 468, 562
DpnII	GATC	3 cut(s)	200, 466, 560
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	1 cut(s)	246
FaiI	YATR	4 cut(s)	156, 244, 405, 599
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	242
FauI	CCCGC	2 cut(s)	531, 537
Fnu4HI	GCNGC	1 cut(s)	552
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	2 cut(s)	60, 555
GluI	GCNGC	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	383, 422
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	206, 284
HphI	GGTGA	2 cut(s)	293, 474
Hpy188I	TCNGA	6 cut(s)	127, 205, 389, 418, 499, 565
HpyAV	CCTTC	2 cut(s)	132, 438
HpyCH4III	ACNGT	4 cut(s)	267, 486, 519, 595
HpyCH4IV	ACGT	2 cut(s)	29, 567
HpyCH4V	TGCA	4 cut(s)	246, 476, 515, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	3 cut(s)	9, 339, 417
HpySE526I	ACGT	2 cut(s)	29, 567
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	539
Kzo9I	GATC	3 cut(s)	200, 466, 560
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	4 cut(s)	127, 149, 294, 486
Lsp1109I	GCAGC	1 cut(s)	563
MaeI	CTAG	2 cut(s)	60, 555
MaeII	ACGT	2 cut(s)	29, 567
MaeIII	GTNAC	4 cut(s)	220, 281, 519, 629
MalI	GATC	3 cut(s)	202, 468, 562
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	3 cut(s)	200, 466, 560
MboII	GAAGA	3 cut(s)	60, 313, 429
MhlI	GDGCHC	2 cut(s)	29, 122
MluCI	AATT	2 cut(s)	288, 544
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	7 cut(s)	223, 268, 412, 424, 435, 480, 551
MspA1I	CMGCKG	2 cut(s)	493, 538
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeII	GATC	3 cut(s)	200, 466, 560
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	281, 519
PciSI	GCTCTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	2 cut(s)	311, 421
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	2 cut(s)	209, 364
RsaI	GTAC	3 cut(s)	191, 592, 616
RsaNI	GTAC	3 cut(s)	190, 591, 615
SacII	CCGCGG	1 cut(s)	539
SapI	GCTCTTC	1 cut(s)	73
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	3 cut(s)	200, 466, 560
Sau96I	GGNCC	2 cut(s)	311, 421
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	29, 122
SfcI	CTRYAG	1 cut(s)	474
Sfr303I	CCGCGG	1 cut(s)	539
SgrBI	CCGCGG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	288, 544
SsiI	CCGC	6 cut(s)	304, 491, 530, 536, 538, 620
SspMI	CTAG	2 cut(s)	60, 555
TaaI	ACNGT	4 cut(s)	267, 486, 519, 595
TaiI	ACGT	2 cut(s)	32, 570
TasI	AATT	2 cut(s)	288, 544
TatI	WGTACW	3 cut(s)	189, 590, 614
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	2 cut(s)	146, 334
TseFI	GTSAC	2 cut(s)	281, 519
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	2 cut(s)	281, 519
TspDTI	ATGAA	2 cut(s)	76, 313
TspRI	CASTG	2 cut(s)	146, 334
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	544
XspI	CTAG	2 cut(s)	60, 555
ZrmI	AGTACT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.