Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004635

Physical Location & Seq

Genomic Coordinates Reverse (-)

21654025 .. 21655084

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGTCTAGAAGGTTTTTGATCGTTTTGGTTGTCATTTCCATGGCATTGGTTAGTTATTCCCAAGCACACAAGTTCTTGGTGGGGGGCAAAGATGGGTGGGTGGTGAACCCTTCTGAAAACTTCAATCACTGGGCCGAAAGGCATAGGTTTCAAGTCAGTGATACCCTTTTTTTCAGATACAAAAAGGGTTCAAACTCTGTCATGGTTGTAACAAAAGAAGACTACTACTCATGCATCAACAAAAATCCAATACAGTCCTTAACAGATGGTGATTCCGTCTTCAAATTCGAACGCTCCGGTCCATTTTTTTTCATCAGTGGCAATGCCGACGATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCCTTAGACACAAATATGACCGTGGCACGACTCCACTAGTACCCTCTTCTTCTCCAGTGGCTTCTCCAAACTCCGGTAGCAATCCATCGGAATTGGATAAACCACCAACACCACCTCTGAAGAAGAACTCGGGCTCAATGCTGTCTTTTAGAGGCTCAGATGTTTGGTTGGTTTTATGTGTCAGTATTGGAATGAGTATGATTTTGTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0012506 GO:0016020 GO:0030659 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0032578 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

9.17

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 117	2.5e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28365 AT4G32490
fragaria_vesca	FvH4_3g19770 FvH4_5g30760
malus_domestica	MD03G1229600.v1.1 MD09G1245000.v1.1
prunus_persica	Prupe.3G140900_v2.0.a1 Prupe.4G179800_v2.0.a1
pyrus_communis	pycom03g17720 pycom09g16300 pycom11g22140
rosa_chinensis	RchiOBHm_Chr5g0033171 RchiOBHm_Chr7g0225651
rosa_laevigata	RLG00000001797 RLG00000033453
rosa_multiflora	Rmu_sc0003876.1_g000008
rosa_roxburghii	Rroxscaffold_3G00233600
rosa_rugosa	Rorug05G0137200 Rorug05G0137200 Rorug05G0137300 Rorug07G0232400
rosa_samantha	Rh5AG229000 Rh5BG230100 Rh5CG258000 Rh5DG234800 Rh7AG371400 Rh7BG366300 Rh7CG390100 Rh7DG377100
rosa_wichuraiana	Rw5G020950 Rw7G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	127, 155, 195, 286
AhlI	ACTAGT	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	135, 372
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	135, 302, 373
AsuHPI	GGTGA	2 cut(s)	118, 284
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	228, 274
BccI	CCATC	3 cut(s)	89, 263, 466
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	2 cut(s)	9, 410
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	135, 302, 373
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	228, 274
BpmI	CTGGAG	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	42, 394
BsaWI	WCCGGW	2 cut(s)	299, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	137, 428
Bse3DI	GCAATG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	42, 394
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	2 cut(s)	137, 428
BshFI	GGCC	2 cut(s)	137, 374
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	300, 447
BslI	CCNNNNNNNGG	1 cut(s)	446
BsnI	GGCC	2 cut(s)	137, 374
BsoBI	CYCGRG	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	21
Bsp19I	CCATGG	1 cut(s)	42
BspANI	GGCC	2 cut(s)	137, 374
BspCNI	CTCAG	1 cut(s)	542
BspT104I	TTCGAA	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	137, 428
BssECI	CCNNGG	2 cut(s)	42, 394
BssMI	GATC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	258, 395
Bst6I	CTCTTC	1 cut(s)	424
BstBI	TTCGAA	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	377, 529
BstDSI	CCRYGG	2 cut(s)	42, 394
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstV2I	GAAGAC	2 cut(s)	228, 274
BstXI	CCANNNNNNTGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	137, 374
BtgI	CCRYGG	2 cut(s)	42, 394
BtsIMutI	CAGTG	4 cut(s)	130, 166, 325, 435
CaiI	CAGNNNCTG	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	135, 302, 373
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	3 cut(s)	43, 205, 234
CviJI	RGCY	5 cut(s)	137, 374, 434, 507, 528
CviKI_1	RGCY	5 cut(s)	137, 374, 434, 507, 528
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	377, 529
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	3 cut(s)	46, 208, 237
FaiI	YATR	7 cut(s)	44, 147, 206, 235, 390, 550, 572
FatI	CATG	3 cut(s)	42, 204, 233
FriOI	GRGCYC	1 cut(s)	509
FspBI	CTAG	2 cut(s)	9, 410
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	137, 374
HapII	CCGG	2 cut(s)	300, 447
Hin1II	CATG	3 cut(s)	46, 208, 237
HinfI	GANTC	3 cut(s)	5, 275, 403
HpaII	CCGG	2 cut(s)	300, 447
HphI	GGTGA	2 cut(s)	118, 284
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	6 cut(s)	118, 179, 351, 463, 492, 532
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	6, 123
HpyCH4III	ACNGT	2 cut(s)	258, 395
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	377, 529
Hsp92II	CATG	3 cut(s)	46, 208, 237
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	4 cut(s)	118, 313, 441, 460
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	9, 410
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	6 cut(s)	233, 274, 411, 414, 505, 508
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	2 cut(s)	287, 464
MlyI	GAGTC	2 cut(s)	14, 397
MnlI	CCTC	3 cut(s)	427, 498, 518
Mph1103I	ATGCAT	1 cut(s)	239
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	2 cut(s)	41, 387
MspI	CCGG	2 cut(s)	300, 447
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	3 cut(s)	46, 208, 237
NsiI	ATGCAT	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	275
PleI	GAGTC	2 cut(s)	13, 397
PpsI	GAGTC	2 cut(s)	13, 397
PspPI	GGNCC	3 cut(s)	135, 302, 373
PstNI	CAGNNNCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	2 cut(s)	41, 387
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	3 cut(s)	135, 302, 373
SchI	GAGTC	2 cut(s)	14, 397
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	3 cut(s)	17, 152, 490
SfaNI	GCATC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	41, 387
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	2 cut(s)	287, 464
SspMI	CTAG	2 cut(s)	9, 410
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	258, 395
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	287, 464
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	4 cut(s)	137, 166, 325, 435
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	4 cut(s)	137, 166, 325, 435
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	287
XbaI	TCTAGA	1 cut(s)	8
XspI	CTAG	2 cut(s)	9, 410
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.