RLG00000001797

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004635
Physical Location & Seq
Forward (+)
20906515 .. 20907741
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001797

Sequence Viewer

Length: 600 bp
ATGGGGTCTAAAAGATGTATGAGCGTTTTGGTTATCATTTTCGTGGCGTTGGTCAGCTATTCTCAAGCACACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAACCCGTCTGAGAACTTCAATCACTGGGCCGGAAGGCATAGGTTTCAGGTCAATGATACGCTCTTTTTCAAGTACAAAAAGGGCTCAAACTCTGTCTTGGTTGTAACAAAAGAAGACTACCACTCGTGCAACAACAACAACCCAATACAGTCCTTAACAGATGGTAACTCCGTCTTCAGATTTGAACGCTCCGGTCCCTTTTTTTTCATCAGCGGCAATGCCAACGATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCCTAAGACACAAGTCTGACCACGGCGATGCTCCACTGGTACCCTCTCCTTCTCCGGTGGCTTCTCCTAACTCTAGTAGTAATCCATCGGATTTAAACAACAAACCAACTCCACCACTGAAGGAGAATTCGGGGTCAGTGCTGCGTTTTAAAGGATCAGCTGTTGGATTGGGGTGGCACAACGGGAATCCCCTTTGTACAAGGGCCCTTTATAAGGGCTCATTTTAA

Protein Analysis

200

Amino Acids

21.83

Weight (kDa)

9.59

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 1.3e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 1 cut(s) 321
AclWI GGATC 1 cut(s) 535
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 2 cut(s) 268, 512
AfaI GTAC 3 cut(s) 182, 414, 571
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 3 cut(s) 127, 178, 293
AluBI AGCT 2 cut(s) 57, 533
AluI AGCT 2 cut(s) 57, 533
AlwI GGATC 1 cut(s) 535
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 3 cut(s) 135, 372, 576
ApaI GGGCCC 1 cut(s) 580
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 499
Asp718I GGTACC 1 cut(s) 412
AspS9I GGNCC 5 cut(s) 135, 302, 373, 576, 577
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 3 cut(s) 194, 580, 593
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 228, 274
BbvI GCAGC 1 cut(s) 501
BccI CCATC 3 cut(s) 89, 263, 466
BceAI ACGGC 1 cut(s) 412
BfaI CTAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 322, 515
BlsI GCNGC 2 cut(s) 323, 516
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 5 cut(s) 135, 302, 373, 576, 577
BmiI GGNNCC 3 cut(s) 304, 414, 578
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 385
BpiI GAAGAC 2 cut(s) 228, 274
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 2 cut(s) 299, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 2 cut(s) 137, 414
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 137, 414
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 1 cut(s) 501
BshFI GGCC 3 cut(s) 137, 374, 578
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 3 cut(s) 138, 300, 428
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 3 cut(s) 137, 374, 578
Bsp120I GGGCCC 1 cut(s) 576
Bsp1286I GDGCHC 3 cut(s) 194, 580, 593
Bsp1407I TGTACA 1 cut(s) 569
Bsp143I GATC 1 cut(s) 527
BspACI CCGC 1 cut(s) 321
BspANI GGCC 3 cut(s) 137, 374, 578
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 304, 414, 578
BspPI GGATC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 569
BsrI ACTGG 2 cut(s) 137, 414
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 1 cut(s) 527
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 569
BstDEI CTNAG 2 cut(s) 117, 377
BstDSI CCRYGG 1 cut(s) 394
BstENI CCTNNNNNAGG 1 cut(s) 584
BstKTI GATC 1 cut(s) 530
BstMBI GATC 1 cut(s) 527
BstPAI GACNNNNGTC 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 2 cut(s) 228, 274
BsuRI GGCC 3 cut(s) 137, 374, 578
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 414
BtsIMutI CAGTG 4 cut(s) 130, 407, 488, 516
CaiI CAGNNNCTG 1 cut(s) 355
Cfr13I GGNCC 5 cut(s) 135, 302, 373, 576, 577
Csp6I GTAC 3 cut(s) 181, 413, 570
CviJI RGCY 8 cut(s) 57, 137, 192, 374, 434, 533, 578, 591
CviKI_1 RGCY 8 cut(s) 57, 137, 192, 374, 434, 533, 578, 591
CviQI GTAC 3 cut(s) 181, 413, 570
DdeI CTNAG 2 cut(s) 117, 377
DpnI GATC 1 cut(s) 529
DpnII GATC 1 cut(s) 527
DraI TTTAAA 2 cut(s) 468, 523
Eco24I GRGCYC 3 cut(s) 194, 580, 593
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 268, 512
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 2 cut(s) 576, 577
EcoRI GAATTC 1 cut(s) 499
EcoT38I GRGCYC 3 cut(s) 194, 580, 593
FaiI YATR 3 cut(s) 20, 147, 585
FaqI GGGAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 322, 515
FriOI GRGCYC 3 cut(s) 194, 580, 593
Fsp4HI GCNGC 2 cut(s) 322, 515
FspBI CTAG 1 cut(s) 447
GluI GCNGC 2 cut(s) 322, 515
HaeIII GGCC 3 cut(s) 137, 374, 578
HapII CCGG 3 cut(s) 138, 300, 428
HinfI GANTC 1 cut(s) 559
HpaII CCGG 3 cut(s) 138, 300, 428
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 5 cut(s) 118, 287, 351, 391, 463
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 135, 432, 487
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 2 cut(s) 117, 377
KpnI GGTACC 1 cut(s) 416
Kzo9I GATC 1 cut(s) 527
LmnI GCTCC 2 cut(s) 302, 409
LpnPI CCDG 6 cut(s) 118, 140, 151, 313, 395, 441
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 211, 272
MalI GATC 1 cut(s) 529
MboI GATC 1 cut(s) 527
MboII GAAGA 2 cut(s) 233, 274
MhlI GDGCHC 3 cut(s) 194, 580, 593
MluCI AATT 1 cut(s) 499
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 1 cut(s) 427
MseI TTAA 4 cut(s) 263, 467, 522, 598
MslI CAYNNNNRTG 2 cut(s) 41, 399
MspA1I CMGCKG 2 cut(s) 321, 533
MspI CCGG 3 cut(s) 138, 300, 428
NdeII GATC 1 cut(s) 527
NlaIV GGNNCC 3 cut(s) 304, 414, 578
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 2 cut(s) 323, 516
PshAI GACNNNNGTC 1 cut(s) 385
PsiI TTATAA 1 cut(s) 585
PspN4I GGNNCC 3 cut(s) 304, 414, 578
PspOMI GGGCCC 1 cut(s) 576
PspPI GGNCC 5 cut(s) 135, 302, 373, 576, 577
PstNI CAGNNNCTG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 182, 414, 571
RsaNI GTAC 3 cut(s) 181, 413, 570
RseI CAYNNNNRTG 2 cut(s) 41, 399
SaqAI TTAA 4 cut(s) 263, 467, 522, 598
SatI GCNGC 2 cut(s) 322, 515
Sau3AI GATC 1 cut(s) 527
Sau96I GGNCC 5 cut(s) 135, 302, 373, 576, 577
SduI GDGCHC 3 cut(s) 194, 580, 593
SetI ASST 4 cut(s) 59, 152, 159, 535
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 41, 399
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 499
SsiI CCGC 1 cut(s) 321
SspMI CTAG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 258
TasI AATT 1 cut(s) 499
TatI WGTACW 2 cut(s) 180, 569
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 4 cut(s) 263, 467, 522, 598
Tru9I TTAA 4 cut(s) 263, 467, 522, 598
TscAI CASTG 4 cut(s) 137, 414, 495, 516
TseI GCWGC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 4 cut(s) 137, 414, 495, 516
VpaK11BI GGWCC 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 1 cut(s) 499
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.