Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

3255236 .. 3257811

Gene Structure 2576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGGAAGAAGAGCACGAGGTTTACGGTGGAGAAATCCCTGAAGTCGGCGATACGGATGTTCCCGATCCGGATATCGATATGTCTGCAGCCGATGAGGACGCCGTTACGGAGCTTGCTGAGATGAAGAGGAGATTAAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGAGAGATGCAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAATCAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGACTATGCCTGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGGGTAACCATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTGGAAGCCGTGCAAGAAGCTCTGCAGCTGAATGAATCAGAGCTTCATGGTCGTCAACTGAAGGTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAACCCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCGTATTTTTATTCCCCATATGGATACGGGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

217

Amino Acids

24.8

Weight (kDa)

4.86

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 38	1.7e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	336, 553, 634
AclWI	GGATC	2 cut(s)	62, 209
AcuI	CTGAAG	3 cut(s)	63, 327, 494
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	301, 638
AfiI	CCNNNNNNNGG	3 cut(s)	47, 544, 545
AgsI	TTSAA	2 cut(s)	535, 543
AjnI	CCWGG	2 cut(s)	502, 523
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	6 cut(s)	115, 158, 206, 434, 442, 457
AluI	AGCT	6 cut(s)	115, 158, 206, 434, 442, 457
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	2 cut(s)	62, 209
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	626
ApeKI	GCWGC	5 cut(s)	89, 158, 161, 230, 439
AspA2I	CCTAGG	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	350
AvrII	CCTAGG	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BauI	CACGAG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	101, 145, 148, 217, 451
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	2 cut(s)	89, 407
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	504, 525
BciVI	GTATCC	2 cut(s)	542, 593
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	222, 615
BfmI	CTRYAG	2 cut(s)	87, 437
BfuI	GTATCC	2 cut(s)	542, 593
BisI	GCNGC	5 cut(s)	90, 159, 162, 231, 440
BlnI	CCTAGG	1 cut(s)	614
BlsI	GCNGC	5 cut(s)	91, 160, 163, 232, 441
Bme1390I	CCNGG	3 cut(s)	350, 504, 525
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	3 cut(s)	350, 504, 525
BmsI	GCATC	2 cut(s)	165, 250
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	524, 614
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 544, 545
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	504, 525
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	524, 614
BseGI	GGATG	3 cut(s)	64, 265, 520
BseLI	CCNNNNNNNGG	3 cut(s)	47, 544, 545
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	145, 266
BseXI	GCAGC	5 cut(s)	101, 145, 148, 217, 451
BshFI	GGCC	1 cut(s)	628
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	71, 349
BslI	CCNNNNNNNGG	3 cut(s)	47, 544, 545
BsmAI	GTCTC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	628
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp13I	TCCGGA	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	67, 214, 266
BspACI	CCGC	3 cut(s)	336, 553, 634
BspANI	GGCC	1 cut(s)	628
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	78
BspEI	TCCGGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	2 cut(s)	91, 441
BspPI	GGATC	2 cut(s)	62, 209
BspQI	GCTCTTC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	524, 614
BssMI	GATC	3 cut(s)	67, 214, 266
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	504, 525
Bst4CI	ACNGT	3 cut(s)	29, 343, 516
Bst6I	CTCTTC	2 cut(s)	6, 122
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	117, 180
BstDEI	CTNAG	2 cut(s)	120, 486
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	3 cut(s)	64, 265, 520
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	70, 217, 269
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	3 cut(s)	67, 214, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 640
BstNI	CCWGG	2 cut(s)	504, 525
BstNSI	RCATGY	2 cut(s)	336, 643
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	348, 502, 523
BstSFI	CTRYAG	2 cut(s)	87, 437
BstV1I	GCAGC	5 cut(s)	101, 145, 148, 217, 451
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	542, 593
BsuRI	GGCC	1 cut(s)	628
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	64, 265, 520
Cac8I	GCNNGC	2 cut(s)	117, 180
CfoI	GCGC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	300, 637
CviAII	CATG	3 cut(s)	333, 461, 640
CviQI	GTAC	2 cut(s)	300, 637
DdeI	CTNAG	2 cut(s)	120, 486
DpnI	GATC	3 cut(s)	69, 216, 268
DpnII	GATC	3 cut(s)	67, 214, 266
Eam1104I	CTCTTC	2 cut(s)	6, 122
EarI	CTCTTC	2 cut(s)	6, 122
Eco130I	CCWWGG	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	76
Eco57I	CTGAAG	3 cut(s)	63, 327, 494
Eco91I	GGTNACC	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	502, 523
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	614
FaeI	CATG	3 cut(s)	336, 464, 643
FatI	CATG	3 cut(s)	332, 460, 639
FauNDI	CATATG	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	90, 159, 162, 231, 440
FokI	GGATG	3 cut(s)	71, 272, 507
Fsp4HI	GCNGC	5 cut(s)	90, 159, 162, 231, 440
FspBI	CTAG	2 cut(s)	222, 615
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	5 cut(s)	90, 159, 162, 231, 440
HaeIII	GGCC	1 cut(s)	628
HapII	CCGG	2 cut(s)	71, 349
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	336, 464, 643
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	3 cut(s)	289, 346, 470
HindII	GTYRAC	3 cut(s)	289, 346, 470
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	2 cut(s)	71, 349
Hpy166II	GTNNAC	5 cut(s)	25, 289, 302, 346, 470
Hpy188I	TCNGA	2 cut(s)	454, 623
Hpy188III	TCNNGA	4 cut(s)	65, 71, 212, 239
Hpy8I	GTNNAC	5 cut(s)	25, 289, 302, 346, 470
HpyAV	CCTTC	5 cut(s)	236, 469, 549, 601, 618
HpyCH4III	ACNGT	3 cut(s)	29, 343, 516
HpyCH4V	TGCA	6 cut(s)	89, 178, 233, 316, 427, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 640
HpyF3I	CTNAG	2 cut(s)	120, 486
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	336, 464, 643
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	67, 214, 266
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	112, 203, 616
Lsp1109I	GCAGC	5 cut(s)	101, 145, 148, 217, 451
LweI	GCATC	2 cut(s)	165, 250
MaeI	CTAG	2 cut(s)	222, 615
MaeIII	GTNAC	2 cut(s)	106, 352
MalI	GATC	3 cut(s)	69, 216, 268
MboI	GATC	3 cut(s)	67, 214, 266
MboII	GAAGA	5 cut(s)	20, 23, 139, 164, 320
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	18
MnlI	CCTC	7 cut(s)	13, 91, 123, 142, 244, 247, 585
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	2 cut(s)	71, 349
MspR9I	CCNGG	3 cut(s)	350, 504, 525
MvaI	CCWGG	2 cut(s)	504, 525
MwoI	GCNNNNNNNGC	2 cut(s)	227, 640
NciI	CCSGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	3 cut(s)	67, 214, 266
NlaIII	CATG	3 cut(s)	336, 464, 643
NlaIV	GGNNCC	1 cut(s)	612
NspI	RCATGY	2 cut(s)	336, 643
PciSI	GCTCTTC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	5 cut(s)	91, 160, 163, 232, 441
Psp6I	CCWGG	2 cut(s)	502, 523
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	2 cut(s)	502, 523
PspN4I	GGNNCC	1 cut(s)	612
PstI	CTGCAG	2 cut(s)	91, 441
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	301, 638
RsaNI	GTAC	2 cut(s)	300, 637
RseI	CAYNNNNRTG	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	5 cut(s)	90, 159, 162, 231, 440
Sau3AI	GATC	3 cut(s)	67, 214, 266
ScrFI	CCNGG	3 cut(s)	350, 504, 525
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	165, 250
SfcI	CTRYAG	2 cut(s)	87, 437
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
SsiI	CCGC	3 cut(s)	336, 553, 634
SspMI	CTAG	2 cut(s)	222, 615
StyD4I	CCNGG	3 cut(s)	348, 502, 523
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	3 cut(s)	29, 343, 516
TaqI	TCGA	4 cut(s)	78, 189, 265, 288
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	5 cut(s)	89, 158, 161, 230, 439
TspDTI	ATGAA	4 cut(s)	140, 449, 462, 524
TspGWI	ACGGA	3 cut(s)	71, 125, 567
XceI	RCATGY	2 cut(s)	336, 643
XmaJI	CCTAGG	1 cut(s)	614
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	222, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.