polyadenylate-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260 |
| fragaria_vesca | FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440 |
| malus_domestica | MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1 |
| prunus_persica | Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 |
| pyrus_communis | pycom01g06120 pycom15g28270 |
| rosa_chinensis | RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711 |
| rosa_laevigata | RLG00000018002 RLG00000018003 |
| rosa_multiflora | Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180 |
| rosa_rugosa | Rorug02G0181900 |
| rosa_samantha | Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700 |
| rosa_wichuraiana | Rw2G018260 Rw2G018270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 50, 102, 218 |
| AclWI | GGATC | 1 cut(s) | 173 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 36 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AflIII | ACRYGT | 1 cut(s) | 93 |
| AluBI | AGCT | 2 cut(s) | 122, 194 |
| AluI | AGCT | 2 cut(s) | 122, 194 |
| Alw26I | GTCTC | 1 cut(s) | 276 |
| AlwI | GGATC | 1 cut(s) | 173 |
| AoxI | GGCC | 2 cut(s) | 3, 144 |
| ApeKI | GCWGC | 2 cut(s) | 170, 191 |
| ApoI | RAATTY | 1 cut(s) | 36 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 50, 82 |
| AspLEI | GCGC | 1 cut(s) | 175 |
| BbvI | GCAGC | 2 cut(s) | 157, 203 |
| BccI | CCATC | 3 cut(s) | 49, 84, 157 |
| BceAI | ACGGC | 2 cut(s) | 76, 89 |
| BcoDI | GTCTC | 1 cut(s) | 276 |
| BfaI | CTAG | 1 cut(s) | 176 |
| BfmI | CTRYAG | 1 cut(s) | 189 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 152 |
| BisI | GCNGC | 3 cut(s) | 171, 192, 219 |
| BlsI | GCNGC | 3 cut(s) | 172, 193, 220 |
| BmsI | GCATC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 1 cut(s) | 133 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 1 cut(s) | 133 |
| BseGI | GGATG | 2 cut(s) | 76, 144 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseMII | CTCAG | 1 cut(s) | 215 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseXI | GCAGC | 2 cut(s) | 157, 203 |
| BshFI | GGCC | 2 cut(s) | 5, 146 |
| BsmAI | GTCTC | 1 cut(s) | 276 |
| BsmBI | CGTCTC | 1 cut(s) | 276 |
| BsnI | GGCC | 2 cut(s) | 5, 146 |
| Bsp143I | GATC | 1 cut(s) | 178 |
| BspACI | CCGC | 3 cut(s) | 50, 102, 218 |
| BspANI | GGCC | 2 cut(s) | 5, 146 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspMAI | CTGCAG | 1 cut(s) | 193 |
| BspPI | GGATC | 1 cut(s) | 173 |
| BspQI | GCTCTTC | 1 cut(s) | 6 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BssECI | CCNNGG | 1 cut(s) | 133 |
| BssMI | GATC | 1 cut(s) | 178 |
| Bst6I | CTCTTC | 1 cut(s) | 6 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 201 |
| BstDSI | CCRYGG | 1 cut(s) | 133 |
| BstF5I | GGATG | 2 cut(s) | 76, 144 |
| BstHHI | GCGC | 1 cut(s) | 175 |
| BstKTI | GATC | 1 cut(s) | 181 |
| BstMAI | GTCTC | 1 cut(s) | 276 |
| BstMBI | GATC | 1 cut(s) | 178 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 191 |
| BstNSI | RCATGY | 1 cut(s) | 97 |
| BstSFI | CTRYAG | 1 cut(s) | 189 |
| BstV1I | GCAGC | 2 cut(s) | 157, 203 |
| BstX2I | RGATCY | 1 cut(s) | 178 |
| BstYI | RGATCY | 1 cut(s) | 178 |
| BsuRI | GGCC | 2 cut(s) | 5, 146 |
| BtgI | CCRYGG | 1 cut(s) | 133 |
| BtsCI | GGATG | 2 cut(s) | 76, 144 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CfoI | GCGC | 1 cut(s) | 175 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CviAII | CATG | 2 cut(s) | 17, 94 |
| CviJI | RGCY | 6 cut(s) | 5, 122, 128, 146, 194, 221 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 122, 128, 146, 194, 221 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 1 cut(s) | 201 |
| DpnI | GATC | 1 cut(s) | 180 |
| DpnII | GATC | 1 cut(s) | 178 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 6 |
| EarI | CTCTTC | 1 cut(s) | 6 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| Esp3I | CGTCTC | 1 cut(s) | 276 |
| FaeI | CATG | 2 cut(s) | 20, 97 |
| FaiI | YATR | 5 cut(s) | 18, 43, 95, 279, 281 |
| FatI | CATG | 2 cut(s) | 16, 93 |
| Fnu4HI | GCNGC | 3 cut(s) | 171, 192, 219 |
| FokI | GGATG | 2 cut(s) | 63, 151 |
| Fsp4HI | GCNGC | 3 cut(s) | 171, 192, 219 |
| FspBI | CTAG | 1 cut(s) | 176 |
| GlaI | GCGC | 1 cut(s) | 174 |
| GluI | GCNGC | 3 cut(s) | 171, 192, 219 |
| HaeIII | GGCC | 2 cut(s) | 5, 146 |
| HhaI | GCGC | 1 cut(s) | 175 |
| Hin1II | CATG | 2 cut(s) | 20, 97 |
| Hin6I | GCGC | 1 cut(s) | 173 |
| HinP1I | GCGC | 1 cut(s) | 173 |
| HindIII | AAGCTT | 1 cut(s) | 120 |
| HinfI | GANTC | 1 cut(s) | 197 |
| Hpy166II | GTNNAC | 2 cut(s) | 25, 99 |
| Hpy188III | TCNNGA | 1 cut(s) | 80 |
| Hpy8I | GTNNAC | 2 cut(s) | 25, 99 |
| Hpy99I | CGWCG | 2 cut(s) | 86, 89 |
| HpyAV | CCTTC | 1 cut(s) | 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 2 cut(s) | 142, 191 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 191 |
| HpyF3I | CTNAG | 1 cut(s) | 201 |
| HpySE526I | ACGT | 1 cut(s) | 269 |
| Hsp92II | CATG | 2 cut(s) | 20, 97 |
| HspAI | GCGC | 1 cut(s) | 173 |
| Kzo9I | GATC | 1 cut(s) | 178 |
| LguI | GCTCTTC | 1 cut(s) | 6 |
| LmnI | GCTCC | 1 cut(s) | 29 |
| LpnPI | CCDG | 4 cut(s) | 128, 188, 195, 273 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 203 |
| LweI | GCATC | 1 cut(s) | 129 |
| MaeI | CTAG | 1 cut(s) | 176 |
| MaeII | ACGT | 1 cut(s) | 269 |
| MaeIII | GTNAC | 2 cut(s) | 257, 295 |
| MalI | GATC | 1 cut(s) | 180 |
| MboI | GATC | 1 cut(s) | 178 |
| MboII | GAAGA | 2 cut(s) | 20, 23 |
| MflI | RGATCY | 1 cut(s) | 178 |
| MluCI | AATT | 1 cut(s) | 36 |
| MnlI | CCTC | 4 cut(s) | 13, 40, 106, 109 |
| MspA1I | CMGCKG | 1 cut(s) | 194 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 191 |
| NdeII | GATC | 1 cut(s) | 178 |
| NlaIII | CATG | 2 cut(s) | 20, 97 |
| NspI | RCATGY | 1 cut(s) | 97 |
| PciI | ACATGT | 1 cut(s) | 93 |
| PciSI | GCTCTTC | 1 cut(s) | 6 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 66 |
| PfeI | GAWTC | 1 cut(s) | 197 |
| PkrI | GCNGC | 3 cut(s) | 172, 193, 220 |
| PscI | ACATGT | 1 cut(s) | 93 |
| PstI | CTGCAG | 1 cut(s) | 193 |
| PsuI | RGATCY | 1 cut(s) | 178 |
| PvuII | CAGCTG | 1 cut(s) | 194 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| SapI | GCTCTTC | 1 cut(s) | 6 |
| SatI | GCNGC | 3 cut(s) | 171, 192, 219 |
| Sau3AI | GATC | 1 cut(s) | 178 |
| SetI | ASST | 5 cut(s) | 24, 124, 196, 272, 286 |
| SfaNI | GCATC | 1 cut(s) | 129 |
| SfcI | CTRYAG | 1 cut(s) | 189 |
| Sse9I | AATT | 1 cut(s) | 36 |
| SsiI | CCGC | 3 cut(s) | 50, 102, 218 |
| SspMI | CTAG | 1 cut(s) | 176 |
| TaiI | ACGT | 1 cut(s) | 272 |
| TaqI | TCGA | 1 cut(s) | 69 |
| TasI | AATT | 1 cut(s) | 36 |
| TauI | GCSGC | 1 cut(s) | 221 |
| TfiI | GAWTC | 1 cut(s) | 197 |
| TseI | GCWGC | 2 cut(s) | 170, 191 |
| TspDTI | ATGAA | 1 cut(s) | 240 |
| TspGWI | ACGGA | 1 cut(s) | 42 |
| XapI | RAATTY | 1 cut(s) | 36 |
| XceI | RCATGY | 1 cut(s) | 97 |
| XspI | CTAG | 1 cut(s) | 176 |