Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

6564927 .. 6569496

Gene Structure 4570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1037000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGGAAGAGGAGCATGAGGTGTACGGAGCAGAGATCCCAGACGAAGGAGAATTGGACGGCGACATGGACGCTCATCACGCCGACGTTGACATGTCCACCGCGGACGTCGCCGCCGTAAAGGAGCTGGACGAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGCGAGATGCAGGCCAAGGTTGAGAAGGAAATGGGCGCTGTTCAAGATCCTGCAATTGCCGCTGCTTCTCAAGCAAACAGAGAAGAGGTGGACGCACGTTCGGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGTACAGTCAATAGAGTGACTATACTGACAGATAAGTTTGGCCAACCAAAGGGTTTCGCTTATGTGGAATTTGTGGAAACCGAAGCTGTTCAAGAGGCTCTCGGCCTAAACGAGTCTGAGTTGCACGGCCGGCAATTGAAGGTTTTGCCGAAAAGGACGAATGTTCCTGGTATGAAGCAATACCGGCCAAGACGCTTCAATCCTTACATGGGTTACCGCTTCAGGAGGCCATATGTACCTCCTTACTTCTCGCCCTATGGATATGGGAAGGTTCCGAGGTTCAGAAGGCCAGCTCGATACATGCCGTATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

221

Amino Acids

25.2

Weight (kDa)

5.13

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	95 - 163	8.9e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccII	CGCG	2 cut(s)	104, 183
AciI	CCGC	6 cut(s)	102, 104, 114, 145, 240, 565
AclWI	GGATC	2 cut(s)	31, 221
AcoI	YGGCCR	3 cut(s)	388, 475, 533
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	2 cut(s)	339, 553
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	3 cut(s)	26, 352, 585
AfiI	CCNNNNNNNGG	3 cut(s)	47, 397, 557
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	5 cut(s)	151, 224, 440, 487, 547
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	4 cut(s)	127, 170, 434, 641
AluI	AGCT	4 cut(s)	127, 170, 434, 641
AlwI	GGATC	2 cut(s)	31, 221
AoxI	GGCC	7 cut(s)	192, 388, 451, 475, 533, 575, 635
ApeKI	GCWGC	5 cut(s)	170, 173, 242, 328, 331
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	390
BbvI	GCAGC	5 cut(s)	157, 160, 229, 340, 343
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	4 cut(s)	76, 101, 490, 637
BciT130I	CCWGG	1 cut(s)	516
BfaI	CTAG	1 cut(s)	661
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	7 cut(s)	114, 171, 174, 240, 243, 329, 332
BlsI	GCNGC	7 cut(s)	115, 172, 175, 241, 244, 330, 333
Bme1390I	CCNGG	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	102, 195, 623
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 397, 557
Bse118I	RCCGGY	2 cut(s)	477, 531
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	102, 195, 623
BseLI	CCNNNNNNNGG	3 cut(s)	47, 397, 557
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	2 cut(s)	26, 176
BseX3I	CGGCCG	1 cut(s)	475
BseXI	GCAGC	5 cut(s)	157, 160, 229, 340, 343
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	104, 183
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	7 cut(s)	194, 390, 453, 477, 535, 577, 637
BsiEI	CGRYCG	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	478, 532
BslI	CCNNNNNNNGG	3 cut(s)	47, 397, 557
BsnI	GGCC	7 cut(s)	194, 390, 453, 477, 535, 577, 637
Bsp143I	GATC	2 cut(s)	36, 226
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	6 cut(s)	102, 104, 114, 145, 240, 565
BspANI	GGCC	7 cut(s)	194, 390, 453, 477, 535, 577, 637
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	2 cut(s)	104, 183
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	2 cut(s)	31, 221
BspQI	GCTCTTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	301
BsrFI	RCCGGY	2 cut(s)	477, 531
BssAI	RCCGGY	2 cut(s)	477, 531
BssECI	CCNNGG	3 cut(s)	102, 195, 623
BssMI	GATC	2 cut(s)	36, 226
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	3 cut(s)	3, 183, 258
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	4 cut(s)	192, 310, 479, 639
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	560
BstFNI	CGCG	2 cut(s)	104, 183
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	39, 229
BstMBI	GATC	2 cut(s)	36, 226
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 110, 239, 251, 478, 532
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	3 cut(s)	97, 312, 652
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	514
BstUI	CGCG	2 cut(s)	104, 183
BstV1I	GCAGC	5 cut(s)	157, 160, 229, 340, 343
BstX2I	RGATCY	2 cut(s)	36, 226
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	2 cut(s)	36, 226
BstZI	CGGCCG	1 cut(s)	475
BsuRI	GGCC	7 cut(s)	194, 390, 453, 477, 535, 577, 637
BtgI	CCRYGG	1 cut(s)	102
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	192, 310, 479, 639
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	2 cut(s)	477, 531
Cfr42I	CCGCGG	1 cut(s)	105
CseI	GACGC	3 cut(s)	80, 281, 549
Csp6I	GTAC	3 cut(s)	25, 351, 584
CviAII	CATG	7 cut(s)	17, 67, 94, 309, 345, 556, 649
CviQI	GTAC	3 cut(s)	25, 351, 584
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	38, 228
DpnII	GATC	2 cut(s)	36, 226
EaeI	YGGCCR	3 cut(s)	388, 475, 533
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	3 cut(s)	3, 183, 258
EarI	CTCTTC	3 cut(s)	3, 183, 258
EclXI	CGGCCG	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	339, 553
Eco91I	GGTNACC	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	7 cut(s)	20, 70, 97, 312, 348, 559, 652
FatI	CATG	7 cut(s)	16, 66, 93, 308, 344, 555, 648
FauNDI	CATATG	1 cut(s)	580
Fnu4HI	GCNGC	7 cut(s)	114, 171, 174, 240, 243, 329, 332
Fsp4HI	GCNGC	7 cut(s)	114, 171, 174, 240, 243, 329, 332
FspBI	CTAG	1 cut(s)	661
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	7 cut(s)	114, 171, 174, 240, 243, 329, 332
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	7 cut(s)	194, 390, 453, 477, 535, 577, 637
HapII	CCGG	2 cut(s)	478, 532
HgaI	GACGC	3 cut(s)	80, 281, 549
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	7 cut(s)	20, 70, 97, 312, 348, 559, 652
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	2 cut(s)	478, 532
Hpy166II	GTNNAC	4 cut(s)	25, 91, 99, 271
Hpy188I	TCNGA	3 cut(s)	466, 624, 632
Hpy188III	TCNNGA	4 cut(s)	182, 224, 440, 571
Hpy8I	GTNNAC	4 cut(s)	25, 91, 99, 271
Hpy99I	CGWCG	2 cut(s)	89, 113
HpyAV	CCTTC	6 cut(s)	41, 145, 199, 481, 610, 627
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	3 cut(s)	87, 108, 277
HpyCH4V	TGCA	6 cut(s)	190, 233, 308, 312, 328, 472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 110, 239, 251, 478, 532
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	3 cut(s)	87, 108, 277
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	7 cut(s)	20, 70, 97, 312, 348, 559, 652
HspAI	GCGC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	477
KroNI	GCCGGC	1 cut(s)	479
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	36, 226
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	13, 29, 124
Lsp1109I	GCAGC	5 cut(s)	157, 160, 229, 340, 343
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	661
MaeII	ACGT	3 cut(s)	87, 108, 277
MaeIII	GTNAC	2 cut(s)	364, 560
MalI	GATC	2 cut(s)	38, 228
MboI	GATC	2 cut(s)	36, 226
MboII	GAAGA	5 cut(s)	20, 151, 170, 275, 332
MfeI	CAATTG	2 cut(s)	234, 482
MflI	RGATCY	2 cut(s)	36, 226
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	4 cut(s)	53, 234, 416, 482
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	9 cut(s)	4, 13, 154, 157, 259, 436, 567, 597, 618
Mox20I	TGGCCA	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	104, 242
MspI	CCGG	2 cut(s)	478, 532
MspR9I	CCNGG	1 cut(s)	516
MunI	CAATTG	2 cut(s)	234, 482
MvaI	CCWGG	1 cut(s)	516
MvnI	CGCG	2 cut(s)	104, 183
MwoI	GCNNNNNNNGC	6 cut(s)	80, 110, 239, 251, 478, 532
NaeI	GCCGGC	1 cut(s)	479
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	2 cut(s)	36, 226
NgoMIV	GCCGGC	1 cut(s)	477
NlaIII	CATG	7 cut(s)	20, 70, 97, 312, 348, 559, 652
NlaIV	GGNNCC	1 cut(s)	621
NmeAIII	GCCGAG	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	364
NruI	TCGCGA	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	3 cut(s)	97, 312, 652
PaeI	GCATGC	1 cut(s)	312
PciI	ACATGT	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 456
PdiI	GCCGGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	435
PkrI	GCNGC	7 cut(s)	115, 172, 175, 241, 244, 330, 333
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	514
PspEI	GGTNACC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	621
PsuI	RGATCY	2 cut(s)	36, 226
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	3 cut(s)	26, 352, 585
RsaNI	GTAC	3 cut(s)	25, 351, 584
SacII	CCGCGG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	183
SatI	GCNGC	7 cut(s)	114, 171, 174, 240, 243, 329, 332
Sau3AI	GATC	2 cut(s)	36, 226
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	4 cut(s)	53, 234, 416, 482
SsiI	CCGC	6 cut(s)	102, 104, 114, 145, 240, 565
SspMI	CTAG	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	3 cut(s)	90, 111, 280
TaqI	TCGA	1 cut(s)	643
TasI	AATT	4 cut(s)	53, 234, 416, 482
TauI	GCSGC	2 cut(s)	116, 242
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	5 cut(s)	170, 173, 242, 328, 331
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	152, 536
TspGWI	ACGGA	1 cut(s)	42
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	3 cut(s)	97, 312, 652
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	661
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.