Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

11649309 .. 11651564

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1034000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGGGGCACACGTTAGGATGTGATTTAAGATGCTGGATCTTCAGTACACAAGAGGGCAGCAACTTCTGTTTTCAAGGGCAAAGGAAAGCCGGGTATTCAATTGTAGTTGCAGAGCTTCTCTGCTGCTGGAATGGTGTTGGTTGGTGGCTCAGGAATATGTGCTCATGTACTTATGTGGTGGATTATGCATGCACACCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGTACGGTTAATAGAGTGACTATACTGACAGATAAGTTTGGCCAACCGAAGGGTTTCGCTTATGTGGAATTTGTTGAAACTGAATCTGTTCAAGAGGCTCTCAGCCTAAACGAATCTGAGTTGCACGGCCGGCAATTGAAGGTTTTGCCTAAAAGGACGAATGTCCCTGGTATGAAGCAATACAGACCTAGACGCTTCAATCCTTATATGGGTTACCGCTTCAGGAGGCCATATGTACCTCCTTACTTTTACTCGCCCTATGGGTATGGAAAGGTTCCGAGGTTCAAAAGGCCAGCTCGATACATGCCGTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

183

Amino Acids

21.32

Weight (kDa)

9.23

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	62 - 124	3.4e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	271, 358
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	3 cut(s)	28, 222, 436
AfaI	GTAC	5 cut(s)	49, 172, 235, 468, 542
AfiI	CCNNNNNNNGG	2 cut(s)	280, 440
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	7 cut(s)	77, 102, 308, 323, 370, 430, 517
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	2 cut(s)	118, 527
AluI	AGCT	2 cut(s)	118, 527
Alw21I	GWGCWC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	4 cut(s)	271, 358, 458, 521
ApeKI	GCWGC	4 cut(s)	60, 126, 211, 214
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	2 cut(s)	284, 318
AsuC2I	CCSGG	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	72, 113, 223, 226
BceAI	ACGGC	2 cut(s)	373, 523
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	420
BisI	GCNGC	4 cut(s)	61, 127, 212, 215
BlsI	GCNGC	4 cut(s)	62, 128, 213, 216
Bme1390I	CCNGG	2 cut(s)	94, 399
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	94, 399
BmsI	GCATC	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	397, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 440
Bse118I	RCCGGY	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	397, 509
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	280, 440
BseMII	CTCAG	3 cut(s)	166, 339, 346
BseSI	GKGCMC	1 cut(s)	12
BseX3I	CGGCCG	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	72, 113, 223, 226
BsgI	GTGCAG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	4 cut(s)	273, 360, 460, 523
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	93, 361
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	280, 440
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	273, 360, 460, 523
Bsp1286I	GDGCHC	2 cut(s)	12, 167
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	4 cut(s)	273, 360, 460, 523
BspCNI	CTCAG	3 cut(s)	165, 340, 345
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	397, 509
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	193, 362, 525
BstDEI	CTNAG	3 cut(s)	152, 332, 348
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	2 cut(s)	195, 538
BstPAI	GACNNNNGTC	1 cut(s)	392
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	92, 397
BstSLI	GKGCMC	1 cut(s)	12
BstV1I	GCAGC	4 cut(s)	72, 113, 223, 226
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	39
BstZI	CGGCCG	1 cut(s)	358
BsuRI	GGCC	4 cut(s)	273, 360, 460, 523
BtsCI	GGATG	1 cut(s)	26
Cac8I	GCNNGC	3 cut(s)	193, 362, 525
Cfr10I	RCCGGY	1 cut(s)	360
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	5 cut(s)	48, 171, 234, 467, 541
CviAII	CATG	4 cut(s)	168, 192, 228, 535
CviQI	GTAC	5 cut(s)	48, 171, 234, 467, 541
DdeI	CTNAG	3 cut(s)	152, 332, 348
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	2 cut(s)	271, 358
EagI	CGGCCG	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	358
Eco52I	CGGCCG	1 cut(s)	358
Eco57I	CTGAAG	3 cut(s)	28, 222, 436
Eco91I	GGTNACC	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	4 cut(s)	171, 195, 231, 538
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	4 cut(s)	167, 191, 227, 534
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	61, 127, 212, 215
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	61, 127, 212, 215
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	4 cut(s)	61, 127, 212, 215
HaeIII	GGCC	4 cut(s)	273, 360, 460, 523
HapII	CCGG	2 cut(s)	93, 361
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	171, 195, 231, 538
HinfI	GANTC	2 cut(s)	314, 344
HpaII	CCGG	2 cut(s)	93, 361
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	349, 510
Hpy188III	TCNNGA	3 cut(s)	154, 323, 454
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	274, 364
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	113, 191, 195, 211, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	152, 332, 348
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	171, 195, 231, 538
KroI	GCCGGC	1 cut(s)	360
KroNI	GCCGGC	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	39
Lsp1109I	GCAGC	4 cut(s)	72, 113, 223, 226
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	247, 443
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	34, 215
MfeI	CAATTG	2 cut(s)	102, 365
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	12, 167
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	3 cut(s)	102, 299, 365
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	5 cut(s)	49, 319, 450, 480, 504
Mox20I	TGGCCA	1 cut(s)	273
Mph1103I	ATGCAT	1 cut(s)	193
MroNI	GCCGGC	1 cut(s)	360
MroXI	GAANNNNTTC	2 cut(s)	284, 318
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	2 cut(s)	29, 240
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	2 cut(s)	93, 361
MspR9I	CCNGG	2 cut(s)	94, 399
MunI	CAATTG	2 cut(s)	102, 365
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	361
NaeI	GCCGGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	1 cut(s)	39
NgoMIV	GCCGGC	1 cut(s)	360
NlaIII	CATG	4 cut(s)	171, 195, 231, 538
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	195, 538
PaeI	GCATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	362
PdmI	GAANNNNTTC	2 cut(s)	284, 318
PfeI	GAWTC	2 cut(s)	314, 344
PkrI	GCNGC	4 cut(s)	62, 128, 213, 216
PshAI	GACNNNNGTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	397
PspEI	GGTNACC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	5 cut(s)	49, 172, 235, 468, 542
RsaNI	GTAC	5 cut(s)	48, 171, 234, 467, 541
SaqAI	TTAA	2 cut(s)	29, 240
SatI	GCNGC	4 cut(s)	61, 127, 212, 215
Sau3AI	GATC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	94, 399
SduI	GDGCHC	2 cut(s)	12, 167
SetI	ASST	9 cut(s)	17, 120, 202, 375, 421, 472, 507, 515, 529
SfaNI	GCATC	1 cut(s)	23
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	3 cut(s)	102, 299, 365
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	92, 397
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	529
TasI	AATT	3 cut(s)	102, 299, 365
TatI	WGTACW	2 cut(s)	47, 170
TfiI	GAWTC	2 cut(s)	314, 344
Tru1I	TTAA	2 cut(s)	29, 240
Tru9I	TTAA	2 cut(s)	29, 240
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	60, 126, 211, 214
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	419
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	2 cut(s)	195, 538
XmnI	GAANNNNTTC	2 cut(s)	284, 318
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.