Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

26080222 .. 26083066

Gene Structure 2845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGACGTCGGAGAGATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCTGATGATGATGCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGACGAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAGATCCTGCTAGTATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTTGTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGCGGCACTGTCCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCATATGTAGAATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAGCTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAGTTCCGTGGTAGACGATTCAATCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGTCTCCTTATATGTATTCCCCATATGGATACGGAAAAGCTCCTAGGTTTAGAAGGCCTATGCGTTACATGCCGTACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

220

Amino Acids

25.25

Weight (kDa)

4.98

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	94 - 162	1.9e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	3 cut(s)	116, 345, 568
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	36, 380, 413
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	47, 88, 554
AgeI	ACCGGT	1 cut(s)	561
AgsI	TTSAA	4 cut(s)	151, 437, 520, 544
AjnI	CCWGG	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	493, 525
AluBI	AGCT	5 cut(s)	170, 218, 431, 466, 620
AluI	AGCT	5 cut(s)	170, 218, 431, 466, 620
Alw21I	GWGCWC	2 cut(s)	18, 220
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	7 cut(s)	98, 101, 170, 173, 239, 328, 388
ApoI	RAATTY	3 cut(s)	36, 380, 413
AsiGI	ACCGGT	1 cut(s)	561
Asp700I	GAANNNNTTC	3 cut(s)	321, 432, 524
AspA2I	CCTAGG	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	44, 373
AvrII	CCTAGG	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	18, 220
BbvI	GCAGC	7 cut(s)	85, 88, 157, 160, 251, 340, 400
BccI	CCATC	4 cut(s)	49, 53, 151, 363
BceAI	ACGGC	1 cut(s)	637
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	2 cut(s)	231, 624
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	8 cut(s)	99, 102, 171, 174, 240, 329, 346, 389
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	8 cut(s)	100, 103, 172, 175, 241, 330, 347, 390
Bme1390I	CCNGG	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	103, 177, 259
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	529, 623
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 88, 554
Bse118I	RCCGGY	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	529, 623
BseGI	GGATG	2 cut(s)	64, 136
BseLI	CCNNNNNNNGG	3 cut(s)	47, 88, 554
BseMI	GCAATG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	26, 275
BseXI	GCAGC	7 cut(s)	85, 88, 157, 160, 251, 340, 400
BshFI	GGCC	1 cut(s)	637
BshTI	ACCGGT	1 cut(s)	561
BsiHKAI	GWGCWC	2 cut(s)	18, 220
BsiSI	CCGG	1 cut(s)	562
BslI	CCNNNNNNNGG	3 cut(s)	47, 88, 554
BsmAI	GTCTC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	18, 220
Bsp143I	GATC	2 cut(s)	223, 275
BspACI	CCGC	3 cut(s)	116, 345, 568
BspANI	GGCC	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	529, 623
BssMI	GATC	2 cut(s)	223, 275
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	29, 352, 525
Bst6I	CTCTTC	2 cut(s)	3, 491
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	192, 253, 307
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	529
BstEII	GGTNACC	2 cut(s)	361, 557
BstF5I	GGATG	2 cut(s)	64, 136
BstKTI	GATC	2 cut(s)	226, 278
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	2 cut(s)	223, 275
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 236, 248, 649
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	2 cut(s)	345, 652
BstPI	GGTNACC	2 cut(s)	361, 557
BstSCI	CCNGG	1 cut(s)	511
BstV1I	GCAGC	7 cut(s)	85, 88, 157, 160, 251, 340, 400
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	64, 136
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	192, 253, 307
Cfr10I	RCCGGY	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	655
CspAI	ACCGGT	1 cut(s)	561
CviAII	CATG	5 cut(s)	342, 470, 553, 580, 649
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	225, 277
DpnII	GATC	2 cut(s)	223, 275
Eam1104I	CTCTTC	2 cut(s)	3, 491
EarI	CTCTTC	2 cut(s)	3, 491
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	336
Eco91I	GGTNACC	2 cut(s)	361, 557
EcoICRI	GAGCTC	1 cut(s)	218
EcoO65I	GGTNACC	2 cut(s)	361, 557
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	5 cut(s)	345, 473, 556, 583, 652
FatI	CATG	5 cut(s)	341, 469, 552, 579, 648
FauNDI	CATATG	2 cut(s)	406, 604
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	8 cut(s)	99, 102, 171, 174, 240, 329, 346, 389
FokI	GGATG	2 cut(s)	71, 143
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	8 cut(s)	99, 102, 171, 174, 240, 329, 346, 389
FspBI	CTAG	2 cut(s)	231, 624
GluI	GCNGC	8 cut(s)	99, 102, 171, 174, 240, 329, 346, 389
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	345, 473, 556, 583, 652
HinfI	GANTC	3 cut(s)	244, 458, 540
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	2 cut(s)	44, 373
Hpy166II	GTNNAC	2 cut(s)	25, 536
Hpy188I	TCNGA	3 cut(s)	50, 372, 463
Hpy188III	TCNNGA	4 cut(s)	41, 202, 221, 437
Hpy8I	GTNNAC	2 cut(s)	25, 536
Hpy99I	CGWCG	2 cut(s)	50, 422
HpyAV	CCTTC	2 cut(s)	199, 627
HpyCH4III	ACNGT	3 cut(s)	29, 352, 525
HpyCH4IV	ACGT	2 cut(s)	45, 507
HpyCH4V	TGCA	5 cut(s)	190, 239, 309, 404, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 236, 248, 649
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	2 cut(s)	45, 507
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	345, 473, 556, 583, 652
Kzo9I	GATC	2 cut(s)	223, 275
LmnI	GCTCC	3 cut(s)	13, 215, 625
LpnPI	CCDG	8 cut(s)	54, 176, 237, 240, 327, 498, 525, 575
Lsp1109I	GCAGC	7 cut(s)	85, 88, 157, 160, 251, 340, 400
LweI	GCATC	3 cut(s)	103, 177, 259
MaeI	CTAG	2 cut(s)	231, 624
MaeII	ACGT	2 cut(s)	45, 507
MaeIII	GTNAC	3 cut(s)	361, 557, 644
MalI	GATC	2 cut(s)	225, 277
MboI	GATC	2 cut(s)	223, 275
MboII	GAAGA	4 cut(s)	20, 151, 329, 508
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	18, 220
MluCI	AATT	4 cut(s)	36, 380, 413, 479
MmeI	TCCRAC	2 cut(s)	28, 108
MnlI	CCTC	7 cut(s)	4, 13, 64, 154, 253, 256, 433
MroXI	GAANNNNTTC	3 cut(s)	321, 432, 524
MseI	TTAA	2 cut(s)	120, 482
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	187, 236, 248, 649
NdeI	CATATG	2 cut(s)	406, 604
NdeII	GATC	2 cut(s)	223, 275
NlaIII	CATG	5 cut(s)	345, 473, 556, 583, 652
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	2 cut(s)	345, 652
PceI	AGGCCT	1 cut(s)	637
PdmI	GAANNNNTTC	3 cut(s)	321, 432, 524
PfeI	GAWTC	3 cut(s)	244, 458, 540
PfoI	TCCNGGA	1 cut(s)	511
PinAI	ACCGGT	1 cut(s)	561
PkrI	GCNGC	8 cut(s)	100, 103, 172, 175, 241, 330, 347, 390
Psp124BI	GAGCTC	1 cut(s)	220
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	511
PspEI	GGTNACC	2 cut(s)	361, 557
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	120, 482
SatI	GCNGC	8 cut(s)	99, 102, 171, 174, 240, 329, 346, 389
Sau3AI	GATC	2 cut(s)	223, 275
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	18, 220
SfaNI	GCATC	3 cut(s)	103, 177, 259
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	36, 380, 413, 479
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	3 cut(s)	116, 345, 568
SspMI	CTAG	2 cut(s)	231, 624
SstI	GAGCTC	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	3 cut(s)	29, 352, 525
TaiI	ACGT	2 cut(s)	48, 510
TaqI	TCGA	3 cut(s)	201, 274, 420
TasI	AATT	4 cut(s)	36, 380, 413, 479
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	244, 458, 540
Tru1I	TTAA	2 cut(s)	120, 482
Tru9I	TTAA	2 cut(s)	120, 482
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	7 cut(s)	98, 101, 170, 173, 239, 328, 388
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	147, 152, 471, 568
TspGWI	ACGGA	2 cut(s)	518, 627
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	3 cut(s)	36, 380, 413
XceI	RCATGY	2 cut(s)	345, 652
XmaJI	CCTAGG	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	3 cut(s)	321, 432, 524
XspI	CTAG	2 cut(s)	231, 624
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.