Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001708.1

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

186127 .. 189772

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001708.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggccgaagaagagcatgaggtgtacggagcagaaattccatacgaggcggagatggacggcgacttcgacccctatcccgacgacgatggcatctccaccgcccacggcgacgacgccgccgtcaaggaggaggaagcttcggctctccacgagattcaggctgatggggcgaaggagatgggtgctgcgcaagatcctgctactgcagctgattctcaggcaaacaaggaagcggctgatgaatgttctgttttcgttggcaatgagagggttgcaaatgcctttgaagaggaaaggaaagatgggttcacgactgtagttgcagggcttctctgctgctggatgctgttgtttggtgcctatgtagcaaatgcggttgattatgcatgcacacctgaagaagtacagcagcatttcgaatcatgtggcacagttaacagagtgactatactgacagataaatttggccaaccaaagggttttgcctatgtggaattccttgaaacagaagctgttcaaaaggctcttgttctgaatgaatctgagttgcatggtcggcaattgaaggttttgcctaaaaggaccaatgttcctggatataagcaattccgccctagacgtttcaatccgtatatgggttactgcatcaggagcccttatgtacctccttacttctattcgccctatggatatgggaaagttcccaggttcagaaggccagcacgatacatgccctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

27.66

Weight (kDa)

4.7

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	359
AciI	CCGC	6 cut(s)	50, 102, 120, 236, 377, 613
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	3, 469
AcsI	RAATTY	3 cut(s)	36, 464, 497
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	26, 408, 666
AfiI	CCNNNNNNNGG	2 cut(s)	478, 638
AgsI	TTSAA	5 cut(s)	290, 506, 521, 568, 628
AjnI	CCWGG	2 cut(s)	595, 707
AluBI	AGCT	3 cut(s)	140, 212, 515
AluI	AGCT	3 cut(s)	140, 212, 515
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	3, 469, 719
ApeKI	GCWGC	4 cut(s)	188, 209, 339, 412
ApoI	RAATTY	3 cut(s)	36, 464, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	585
AsuII	TTCGAA	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	659
BauI	CACGAG	1 cut(s)	152
BbvI	GCAGC	4 cut(s)	175, 221, 326, 424
BccI	CCATC	5 cut(s)	49, 83, 161, 175, 299
BceAI	ACGGC	3 cut(s)	76, 107, 124
BciT130I	CCWGG	2 cut(s)	597, 709
BfaI	CTAG	2 cut(s)	618, 742
BfmI	CTRYAG	2 cut(s)	207, 318
BisI	GCNGC	6 cut(s)	120, 189, 210, 237, 340, 413
BlsI	GCNGC	6 cut(s)	121, 190, 211, 238, 341, 414
Bme1390I	CCNGG	2 cut(s)	597, 709
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	2 cut(s)	361, 656
BmrFI	CCNGG	2 cut(s)	597, 709
BmsI	GCATC	3 cut(s)	102, 336, 657
Bpu14I	TTCGAA	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	106, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 638
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	597, 709
BseDI	CCNNGG	2 cut(s)	106, 707
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	478, 638
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	233, 537
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	175, 221, 326, 424
BshFI	GGCC	3 cut(s)	5, 471, 721
BshNI	GGYRCC	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	478, 638
BsnI	GGCC	3 cut(s)	5, 471, 721
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	6 cut(s)	50, 102, 120, 236, 377, 613
BspANI	GGCC	3 cut(s)	5, 471, 721
BspCNI	CTCAG	2 cut(s)	232, 538
BspLI	GGNNCC	2 cut(s)	361, 656
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	106, 707
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	597, 709
Bst4CI	ACNGT	2 cut(s)	319, 436
Bst6I	CTCTTC	2 cut(s)	6, 285
BstACI	GRCGYC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	391, 723
BstDEI	CTNAG	2 cut(s)	219, 546
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 209, 368, 559, 654
BstNI	CCWGG	2 cut(s)	597, 709
BstNSI	RCATGY	2 cut(s)	393, 736
BstSCI	CCNGG	2 cut(s)	595, 707
BstSFI	CTRYAG	2 cut(s)	207, 318
BstV1I	GCAGC	4 cut(s)	175, 221, 326, 424
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	5, 471, 721
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	391, 723
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	585
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	25, 407, 665
CviAII	CATG	5 cut(s)	17, 390, 426, 554, 733
CviQI	GTAC	3 cut(s)	25, 407, 665
DdeI	CTNAG	2 cut(s)	219, 546
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	3, 469
Eam1104I	CTCTTC	2 cut(s)	6, 285
EarI	CTCTTC	2 cut(s)	6, 285
EciI	GGCGGA	2 cut(s)	65, 602
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	595, 707
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	659
FaeI	CATG	5 cut(s)	20, 393, 429, 557, 736
FatI	CATG	5 cut(s)	16, 389, 425, 553, 732
Fnu4HI	GCNGC	6 cut(s)	120, 189, 210, 237, 340, 413
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	6 cut(s)	120, 189, 210, 237, 340, 413
FspBI	CTAG	2 cut(s)	618, 742
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	6 cut(s)	120, 189, 210, 237, 340, 413
HaeIII	GGCC	3 cut(s)	5, 471, 721
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	20, 393, 429, 557, 736
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	4 cut(s)	157, 215, 422, 542
HpaI	GTTAAC	1 cut(s)	439
Hpy166II	GTNNAC	3 cut(s)	25, 312, 439
Hpy188I	TCNGA	3 cut(s)	537, 547, 716
Hpy188III	TCNNGA	3 cut(s)	80, 313, 652
Hpy8I	GTNNAC	3 cut(s)	25, 312, 439
Hpy99I	CGWCG	4 cut(s)	86, 89, 116, 119
HpyAV	CCTTC	3 cut(s)	169, 562, 711
HpyCH4III	ACNGT	2 cut(s)	319, 436
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	7 cut(s)	209, 278, 326, 389, 393, 553, 648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 209, 368, 559, 654
HpyF3I	CTNAG	2 cut(s)	219, 546
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	20, 393, 429, 557, 736
HspAI	GCGC	1 cut(s)	191
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	29, 654
Lsp1109I	GCAGC	4 cut(s)	175, 221, 326, 424
LweI	GCATC	3 cut(s)	102, 336, 657
MaeI	CTAG	2 cut(s)	618, 742
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	445, 641
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	20, 23, 302, 413
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	5 cut(s)	36, 464, 497, 563, 608
MluNI	TGGCCA	1 cut(s)	471
MnlI	CCTC	7 cut(s)	13, 40, 124, 127, 264, 286, 678
Mox20I	TGGCCA	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	597, 709
MunI	CAATTG	1 cut(s)	563
MvaI	CCWGG	2 cut(s)	597, 709
MwoI	GCNNNNNNNGC	5 cut(s)	170, 209, 368, 559, 654
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	20, 393, 429, 557, 736
NlaIV	GGNNCC	2 cut(s)	361, 656
NmuCI	GTSAC	1 cut(s)	445
NsbI	TGCGCA	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	393, 736
NspV	TTCGAA	1 cut(s)	420
PaeI	GCATGC	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 120
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	157, 215, 422, 542
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	6 cut(s)	121, 190, 211, 238, 341, 414
Psp6I	CCWGG	2 cut(s)	595, 707
PspGI	CCWGG	2 cut(s)	595, 707
PspN4I	GGNNCC	2 cut(s)	361, 656
PspPI	GGNCC	1 cut(s)	585
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	26, 408, 666
RsaNI	GTAC	3 cut(s)	25, 407, 665
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	6 cut(s)	120, 189, 210, 237, 340, 413
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	585
ScrFI	CCNGG	2 cut(s)	597, 709
SduI	GDGCHC	1 cut(s)	659
SetI	ASST	9 cut(s)	24, 142, 214, 400, 517, 573, 625, 670, 713
SfaNI	GCATC	3 cut(s)	102, 336, 657
SfcI	CTRYAG	2 cut(s)	207, 318
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	1 cut(s)	585
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	5 cut(s)	36, 464, 497, 563, 608
SsiI	CCGC	6 cut(s)	50, 102, 120, 236, 377, 613
SspMI	CTAG	2 cut(s)	618, 742
StyD4I	CCNGG	2 cut(s)	595, 707
TaaI	ACNGT	2 cut(s)	319, 436
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	2 cut(s)	69, 420
TasI	AATT	5 cut(s)	36, 464, 497, 563, 608
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	2 cut(s)	122, 239
TfiI	GAWTC	4 cut(s)	157, 215, 422, 542
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	188, 209, 339, 412
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	258, 555
TspGWI	ACGGA	2 cut(s)	42, 621
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	3 cut(s)	36, 464, 497
XceI	RCATGY	2 cut(s)	393, 736
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	2 cut(s)	618, 742
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.