Rh2BG249200

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001968
Physical Location & Seq
Forward (+)
25527703 .. 25530898
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG249200.1

Sequence Viewer

Length: 633 bp
ATGGCCGAAGAAGAGCATGAGGTGTACGGAGCAGAAATTCCATACGAGGCGCTGATGGACGGCGACTTCGACCCCCATCCCGACGACGATGGTATCTCCACCGCCCACGGCGACGACGCCCCCGTCAAGGAGGAGGAAGCTTCGGCTCTCCGCGAGATGCAGGCCAATGGGGCGAAGGAGATGGGTGCTGCGCAAGATCCTGCTACTGCAGCTGATTCTCAGGCAAATAAGGAAGCGGCTGATGAATGTTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCGAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGATGCTGTTCAAAAGGCTCTTGTTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATATTCCTGGATATAAACAATTCCGCCCTAGACGTTTCAATCCGTATATGGGTTACTGCATCAGGAGGCCTTATGTACCTCCTTACTTCTATTCGCCCTATGGATATGGGAAGGTTCCCAGGTTCAGAAGGCCAGCACGATACATGCCCTACTAG

Protein Analysis

210

Amino Acids

23.68

Weight (kDa)

4.95

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 85 - 153 5.1e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
Acc16I TGCGCA 1 cut(s) 192
AccII CGCG 1 cut(s) 153
AciI CCGC 4 cut(s) 102, 151, 236, 502
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 2 cut(s) 3, 358
AcsI RAATTY 3 cut(s) 36, 353, 386
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 3 cut(s) 26, 297, 555
AfiI CCNNNNNNNGG 3 cut(s) 127, 367, 527
AgsI TTSAA 4 cut(s) 395, 410, 457, 517
AjnI CCWGG 2 cut(s) 484, 596
AluBI AGCT 2 cut(s) 140, 212
AluI AGCT 2 cut(s) 140, 212
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 5 cut(s) 3, 162, 358, 545, 608
ApeKI GCWGC 3 cut(s) 188, 209, 301
ApoI RAATTY 3 cut(s) 36, 353, 386
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 2 cut(s) 52, 193
AspS9I GGNCC 1 cut(s) 474
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 474
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BalI TGGCCA 1 cut(s) 360
BbvI GCAGC 3 cut(s) 175, 221, 313
BccI CCATC 4 cut(s) 49, 83, 84, 175
BceAI ACGGC 2 cut(s) 76, 124
BciT130I CCWGG 2 cut(s) 486, 598
BfaI CTAG 2 cut(s) 507, 631
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 4 cut(s) 189, 210, 237, 302
BlsI GCNGC 4 cut(s) 190, 211, 238, 303
Bme1390I CCNGG 2 cut(s) 486, 598
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 2 cut(s) 486, 598
BmsI GCATC 3 cut(s) 147, 391, 546
Bpu14I TTCGAA 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 106, 596
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 367, 527
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 2 cut(s) 486, 598
BseDI CCNNGG 2 cut(s) 106, 596
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 127, 367, 527
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 233, 426
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 3 cut(s) 175, 221, 313
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 5 cut(s) 5, 164, 360, 547, 610
BslI CCNNNNNNNGG 3 cut(s) 127, 367, 527
BsnI GGCC 5 cut(s) 5, 164, 360, 547, 610
Bsp119I TTCGAA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 4 cut(s) 102, 151, 236, 502
BspANI GGCC 5 cut(s) 5, 164, 360, 547, 610
BspCNI CTCAG 2 cut(s) 232, 427
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 106, 596
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 486, 598
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 162, 280, 612
BstDEI CTNAG 2 cut(s) 219, 435
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 193
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 170, 209, 448
BstNI CCWGG 2 cut(s) 486, 598
BstNSI RCATGY 2 cut(s) 282, 625
BstSCI CCNGG 2 cut(s) 484, 596
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 175, 221, 313
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 5 cut(s) 5, 164, 360, 547, 610
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 3 cut(s) 162, 280, 612
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 2 cut(s) 52, 193
Cfr13I GGNCC 1 cut(s) 474
CseI GACGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 25, 296, 554
CviAII CATG 5 cut(s) 17, 279, 315, 443, 622
CviQI GTAC 3 cut(s) 25, 296, 554
DdeI CTNAG 2 cut(s) 219, 435
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 2 cut(s) 3, 358
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 484, 596
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 5 cut(s) 20, 282, 318, 446, 625
FatI CATG 5 cut(s) 16, 278, 314, 442, 621
Fnu4HI GCNGC 4 cut(s) 189, 210, 237, 302
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 4 cut(s) 189, 210, 237, 302
FspBI CTAG 2 cut(s) 507, 631
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 2 cut(s) 51, 192
GluI GCNGC 4 cut(s) 189, 210, 237, 302
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 5 cut(s) 5, 164, 360, 547, 610
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 52, 193
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 20, 282, 318, 446, 625
Hin6I GCGC 2 cut(s) 50, 191
HinP1I GCGC 2 cut(s) 50, 191
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 3 cut(s) 215, 311, 431
HpaI GTTAAC 1 cut(s) 328
Hpy166II GTNNAC 2 cut(s) 25, 328
Hpy188I TCNGA 3 cut(s) 426, 436, 605
Hpy188III TCNNGA 2 cut(s) 80, 541
Hpy8I GTNNAC 2 cut(s) 25, 328
Hpy99I CGWCG 4 cut(s) 86, 89, 116, 119
HpyAV CCTTC 4 cut(s) 169, 451, 583, 600
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 6 cut(s) 160, 209, 278, 282, 442, 537
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 209, 448
HpyF3I CTNAG 2 cut(s) 219, 435
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 20, 282, 318, 446, 625
HspAI GCGC 2 cut(s) 50, 191
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 196
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 3 cut(s) 175, 221, 313
LweI GCATC 3 cut(s) 147, 391, 546
MaeI CTAG 2 cut(s) 507, 631
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 2 cut(s) 334, 530
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 20, 23, 302
MfeI CAATTG 1 cut(s) 452
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 5 cut(s) 36, 353, 386, 452, 497
MluNI TGGCCA 1 cut(s) 360
MnlI CCTC 6 cut(s) 13, 40, 124, 127, 537, 567
Mox20I TGGCCA 1 cut(s) 360
Mph1103I ATGCAT 1 cut(s) 280
MscI TGGCCA 1 cut(s) 360
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 486, 598
MunI CAATTG 1 cut(s) 452
MvaI CCWGG 2 cut(s) 486, 598
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 170, 209, 448
NdeII GATC 1 cut(s) 196
NlaIII CATG 5 cut(s) 20, 282, 318, 446, 625
NlaIV GGNNCC 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 334
NsbI TGCGCA 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 2 cut(s) 282, 625
NspV TTCGAA 1 cut(s) 309
PaeI GCATGC 1 cut(s) 282
PceI AGGCCT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 120
PfeI GAWTC 3 cut(s) 215, 311, 431
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 4 cut(s) 190, 211, 238, 303
Psp6I CCWGG 2 cut(s) 484, 596
PspGI CCWGG 2 cut(s) 484, 596
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 474
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 3 cut(s) 26, 297, 555
RsaNI GTAC 3 cut(s) 25, 296, 554
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 4 cut(s) 189, 210, 237, 302
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 474
ScrFI CCNGG 2 cut(s) 486, 598
SetI ASST 9 cut(s) 24, 142, 214, 289, 462, 514, 559, 594, 602
SfaNI GCATC 3 cut(s) 147, 391, 546
SfcI CTRYAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 1 cut(s) 474
SphI GCATGC 1 cut(s) 282
Sse9I AATT 5 cut(s) 36, 353, 386, 452, 497
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 4 cut(s) 102, 151, 236, 502
SspI AATATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 507, 631
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 484, 596
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 514
TaqI TCGA 2 cut(s) 69, 309
TasI AATT 5 cut(s) 36, 353, 386, 452, 497
TatI WGTACW 1 cut(s) 295
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 3 cut(s) 215, 311, 431
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 188, 209, 301
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 258, 444
TspGWI ACGGA 2 cut(s) 42, 510
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 3 cut(s) 36, 353, 386
XceI RCATGY 2 cut(s) 282, 625
XspI CTAG 2 cut(s) 507, 631
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.