Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

12651019 .. 12655446

Gene Structure 4428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACGAAGAGGAACATGAGGTGTACGGAGCAGAAATTCCAGACGAGGCGGAGATGGAAGGGGACTTGGACCCCAATCACGCCGACGTTGACATGTCCACCGCCGACGACGACGCAGCCGTCAAGGAGCTGGATGAGATGAAGAAGCGCTTGAAGGAGATGGAGGAGGAAGCTGCCGCCCTCCGCGAGATGCAGGCCAAGGTTGAGAAGGAAATGGGTGCTGCCCAAGACCCTGCTGCTGCAGCTGTTTCTCAGGCACACAAGGAAGAGGCTGATGCGCGTTCTGTTTTCGTTGGTAATGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCCAATCATGTGGCACAGTAAACAGAGTAACTATACTGACAGATAAATTTGGCCAACCGAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGAAGCTGTTCAAGAGGCTCTTGTTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTTCCTGGTATGAAGCAATTCCGCCCTAGACGCTTCAGTCCTTATATGGGTTACCGCTTTAGGAGGTCATATGTACCCCCTTACTTCTACTCGCCTTATGGATATGGGAAGGTTCCCAGGTTCAGAAGGCCAGCACGATACATGCCCTACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

25.44

Weight (kDa)

4.99

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 164	1.8e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 549
AccII	CGCG	2 cut(s)	186, 280
AciI	CCGC	6 cut(s)	50, 102, 177, 184, 535, 568
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	3 cut(s)	36, 386, 419
AcuI	CTGAAG	2 cut(s)	342, 532
AfaI	GTAC	3 cut(s)	26, 330, 588
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	400, 560
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	154, 428, 443, 490
AjnI	CCWGG	2 cut(s)	517, 629
AluBI	AGCT	4 cut(s)	130, 173, 245, 437
AluI	AGCT	4 cut(s)	130, 173, 245, 437
AlwNI	CAGNNNCTG	1 cut(s)	437
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	3 cut(s)	195, 391, 641
ApeKI	GCWGC	7 cut(s)	116, 173, 221, 236, 239, 242, 334
ApoI	RAATTY	3 cut(s)	36, 386, 419
Asp700I	GAANNNNTTC	2 cut(s)	438, 530
AspLEI	GCGC	2 cut(s)	150, 280
AspS9I	GGNCC	2 cut(s)	70, 507
AvaII	GGWCC	2 cut(s)	70, 507
BalI	TGGCCA	1 cut(s)	393
BbvI	GCAGC	7 cut(s)	128, 160, 208, 223, 226, 254, 346
BccI	CCATC	2 cut(s)	49, 154
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	519, 631
BfaI	CTAG	2 cut(s)	540, 667
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
BlsI	GCNGC	8 cut(s)	118, 175, 178, 223, 238, 241, 244, 336
Bme1390I	CCNGG	2 cut(s)	519, 631
Bme18I	GGWCC	2 cut(s)	70, 507
BmgT120I	GGNCC	2 cut(s)	70, 507
BmiI	GGNNCC	2 cut(s)	72, 627
BmrFI	CCNGG	2 cut(s)	519, 631
BmsI	GCATC	2 cut(s)	180, 265
BsaJI	CCNNGG	2 cut(s)	198, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 560
BseBI	CCWGG	2 cut(s)	519, 631
BseDI	CCNNGG	2 cut(s)	198, 629
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	400, 560
BseMII	CTCAG	2 cut(s)	266, 459
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	7 cut(s)	128, 160, 208, 223, 226, 254, 346
Bsh1236I	CGCG	2 cut(s)	186, 280
BshFI	GGCC	3 cut(s)	197, 393, 643
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	400, 560
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	197, 393, 643
BspACI	CCGC	6 cut(s)	50, 102, 177, 184, 535, 568
BspANI	GGCC	3 cut(s)	197, 393, 643
BspCNI	CTCAG	2 cut(s)	265, 460
BspFNI	CGCG	2 cut(s)	186, 280
BspLI	GGNNCC	2 cut(s)	72, 627
BspMAI	CTGCAG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	198, 629
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	519, 631
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	3, 261
BstC8I	GCNNGC	3 cut(s)	195, 313, 645
BstDEI	CTNAG	2 cut(s)	252, 468
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	186, 280
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
BstNI	CCWGG	2 cut(s)	519, 631
BstNSI	RCATGY	3 cut(s)	97, 315, 658
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	517, 629
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	186, 280
BstV1I	GCAGC	7 cut(s)	128, 160, 208, 223, 226, 254, 346
BstXI	CCANNNNNNTGG	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	197, 393, 643
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	195, 313, 645
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	2 cut(s)	150, 280
Cfr13I	GGNCC	2 cut(s)	70, 507
CseI	GACGC	2 cut(s)	122, 552
Csp6I	GTAC	3 cut(s)	25, 329, 587
CviAII	CATG	6 cut(s)	17, 94, 312, 348, 476, 655
CviQI	GTAC	3 cut(s)	25, 329, 587
DdeI	CTNAG	2 cut(s)	252, 468
DrdI	GACNNNNNNGTC	2 cut(s)	119, 549
DseDI	GACNNNNNNGTC	2 cut(s)	119, 549
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	3, 261
EarI	CTCTTC	2 cut(s)	3, 261
EciI	GGCGGA	2 cut(s)	65, 524
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	70, 507
Eco47III	AGCGCT	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	342, 532
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	517, 629
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 435, 467
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	6 cut(s)	16, 93, 311, 347, 475, 654
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
FspBI	CTAG	2 cut(s)	540, 667
GlaI	GCGC	2 cut(s)	149, 279
GluI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	197, 393, 643
HgaI	GACGC	2 cut(s)	122, 552
HhaI	GCGC	2 cut(s)	150, 280
Hin1II	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
Hin6I	GCGC	2 cut(s)	148, 278
HinP1I	GCGC	2 cut(s)	148, 278
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	464
Hpy166II	GTNNAC	4 cut(s)	25, 91, 99, 361
Hpy188I	TCNGA	3 cut(s)	459, 469, 638
Hpy188III	TCNNGA	2 cut(s)	41, 443
Hpy8I	GTNNAC	4 cut(s)	25, 91, 99, 361
Hpy99I	CGWCG	4 cut(s)	89, 110, 113, 116
HpyAV	CCTTC	7 cut(s)	53, 148, 202, 394, 484, 616, 633
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	193, 242, 311, 315, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
HpyF3I	CTNAG	2 cut(s)	252, 468
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
HspAI	GCGC	2 cut(s)	148, 278
LmnI	GCTCC	2 cut(s)	29, 127
Lsp1109I	GCAGC	7 cut(s)	128, 160, 208, 223, 226, 254, 346
LweI	GCATC	2 cut(s)	180, 265
MaeI	CTAG	2 cut(s)	540, 667
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	367, 563
MboII	GAAGA	4 cut(s)	20, 154, 278, 335
MfeI	CAATTG	1 cut(s)	485
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	5 cut(s)	36, 386, 419, 485, 530
MluNI	TGGCCA	1 cut(s)	393
MnlI	CCTC	9 cut(s)	4, 13, 40, 157, 160, 191, 262, 439, 570
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	438, 530
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	519, 631
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	519, 631
MvnI	CGCG	2 cut(s)	186, 280
MwoI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
NdeI	CATATG	1 cut(s)	583
NlaIII	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
NlaIV	GGNNCC	2 cut(s)	72, 627
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	3 cut(s)	97, 315, 658
PaeI	GCATGC	1 cut(s)	315
PciI	ACATGT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	2 cut(s)	438, 530
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	8 cut(s)	118, 175, 178, 223, 238, 241, 244, 336
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	517, 629
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	2 cut(s)	517, 629
PspN4I	GGNNCC	2 cut(s)	72, 627
PspPI	GGNCC	2 cut(s)	70, 507
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	26, 330, 588
RsaNI	GTAC	3 cut(s)	25, 329, 587
SatI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
Sau96I	GGNCC	2 cut(s)	70, 507
ScrFI	CCNGG	2 cut(s)	519, 631
SfaNI	GCATC	2 cut(s)	180, 265
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	70, 507
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	5 cut(s)	36, 386, 419, 485, 530
SsiI	CCGC	6 cut(s)	50, 102, 177, 184, 535, 568
SspMI	CTAG	2 cut(s)	540, 667
StyD4I	CCNGG	2 cut(s)	517, 629
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	90
TasI	AATT	5 cut(s)	36, 386, 419, 485, 530
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	464
TseI	GCWGC	7 cut(s)	116, 173, 221, 236, 239, 242, 334
TspDTI	ATGAA	3 cut(s)	155, 477, 539
TspGWI	ACGGA	1 cut(s)	42
VpaK11BI	GGWCC	2 cut(s)	70, 507
XapI	RAATTY	3 cut(s)	36, 386, 419
XceI	RCATGY	3 cut(s)	97, 315, 658
XmnI	GAANNNNTTC	2 cut(s)	438, 530
XspI	CTAG	2 cut(s)	540, 667
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.