Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

811103 .. 821347

Gene Structure 10245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCCAGAGTGGTGTTGGTCGATGAAAGGAGTCCAAAAATTGAATTTTGATCCTGCTACTGCTGCTGATTCTCAGGCAAACAAGGAAGCAGCTGATGAATGTTCTATTTTCGTTGGGAATTTCTTGAAAGGGGAAGACGAGACTATTTTAGCCACATTTGTGGATGTATTTACTATTGGAGATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

62

Amino Acids

6.8

Weight (kDa)

4.05

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	44, 176
AcsI	RAATTY	2 cut(s)	43, 118
AgsI	TTSAA	2 cut(s)	43, 127
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	44, 176
ApeKI	GCWGC	2 cut(s)	62, 89
ApoI	RAATTY	2 cut(s)	43, 118
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	49, 101
BcoDI	GTCTC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	63, 90
BlsI	GCNGC	2 cut(s)	64, 91
BpiI	GAAGAC	1 cut(s)	141
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	49, 101
BsmAI	GTCTC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	49, 181
BspCNI	CTCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	44, 176
BssMI	GATC	2 cut(s)	49, 181
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	52, 184
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	49, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	49, 101
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	169
CviJI	RGCY	2 cut(s)	92, 152
CviKI_1	RGCY	2 cut(s)	92, 152
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	51, 183
DpnII	GATC	2 cut(s)	49, 181
Fnu4HI	GCNGC	2 cut(s)	63, 90
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	63, 90
GluI	GCNGC	2 cut(s)	63, 90
HinfI	GANTC	2 cut(s)	30, 68
Hpy188III	TCNNGA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	49, 181
LpnPI	CCDG	3 cut(s)	18, 59, 66
Lsp1109I	GCAGC	2 cut(s)	49, 101
MalI	GATC	2 cut(s)	51, 183
MboI	GATC	2 cut(s)	49, 181
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	3 cut(s)	38, 43, 118
MlyI	GAGTC	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	49, 181
OliI	CACNNNNGTG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	64, 91
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	2 cut(s)	63, 90
Sau3AI	GATC	2 cut(s)	49, 181
SchI	GAGTC	1 cut(s)	39
SetI	ASST	1 cut(s)	94
SgeI	CNNG	6 cut(s)	17, 65, 86, 94, 136, 151
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	38, 43, 118
TaqI	TCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	38, 43, 118
TfiI	GAWTC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	62, 89
TspDTI	ATGAA	2 cut(s)	38, 111
TspGWI	ACGGA	1 cut(s)	174
XapI	RAATTY	2 cut(s)	43, 118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.