Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001708.1

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

180079 .. 184510

Gene Structure 4432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001708.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggacgaagaggaacatgaggtgtacggagcagacatcccagacgagacagaaatggagggcgacttggactcccatcacgccgacgttgacatgtccaccgccgacgacgacgccgccgtcaaggagctggatgagatgaagaagcgcttgaaggagatggaggaggaagctgctgccctccgtgagatgcaggccaaggttgagaaggaaatgggtgctgcccaagaccctgccgctgcagctgtttctcaggcacacaaggaagaggctgatgcgcgttctatttttgttggcaatgttgattatgcatgcacacctgaagaagtacagcagcatttccaatcatgtggcacagttaacagagtgactatactgacagataaatttggccaaccaaagggttttgcctatgtggaattccttgaaacagaagccgttcaagaggctcttgttctgaatgaatctgagttgcatggtcggcaattgaaggttttgcctaaaaggaccaatgtccctggtatgaagcaattccgccctagacgcttcaatccttatatgggttaccgcttcaggaggccatatgtacccccttacttctactctccttatggatatgggaaggttcccagattcagaaggccagcacgatacatgccctactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

222

Amino Acids

25.52

Weight (kDa)

5.05

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	102, 117, 237, 535, 568
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	386, 419
AcuI	CTGAAG	2 cut(s)	342, 556
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	26, 330, 588
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	400, 560
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	5 cut(s)	154, 428, 443, 490, 550
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	3 cut(s)	130, 173, 245
AluI	AGCT	3 cut(s)	130, 173, 245
Alw26I	GTCTC	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	4 cut(s)	195, 391, 578, 641
ApeKI	GCWGC	6 cut(s)	173, 176, 221, 239, 242, 334
ApoI	RAATTY	2 cut(s)	386, 419
Asp700I	GAANNNNTTC	2 cut(s)	438, 530
AspLEI	GCGC	2 cut(s)	150, 280
AspS9I	GGNCC	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	393
BbvI	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
BccI	CCATC	2 cut(s)	84, 154
BceAI	ACGGC	2 cut(s)	104, 422
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	540, 667
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
BlsI	GCNGC	8 cut(s)	118, 175, 178, 223, 238, 241, 244, 336
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	180, 265
BoxI	GACNNNNGTC	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	198, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 560
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	198, 517
BseGI	GGATG	2 cut(s)	36, 139
BseLI	CCNNNNNNNGG	2 cut(s)	400, 560
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	266, 459
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	4 cut(s)	197, 393, 580, 643
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	400, 560
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	4 cut(s)	197, 393, 580, 643
BspACI	CCGC	5 cut(s)	102, 117, 237, 535, 568
BspANI	GGCC	4 cut(s)	197, 393, 580, 643
BspCNI	CTCAG	2 cut(s)	265, 460
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	198, 517
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	3, 261
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	195, 313, 645
BstDEI	CTNAG	2 cut(s)	252, 468
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	36, 139
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 280
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	3 cut(s)	97, 315, 658
BstPAI	GACNNNNGTC	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
BstXI	CCANNNNNNTGG	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	197, 393, 580, 643
BtsCI	GGATG	2 cut(s)	36, 139
Cac8I	GCNNGC	3 cut(s)	195, 313, 645
CfoI	GCGC	2 cut(s)	150, 280
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	2 cut(s)	122, 552
Csp6I	GTAC	3 cut(s)	25, 329, 587
CviAII	CATG	6 cut(s)	17, 94, 312, 348, 476, 655
CviQI	GTAC	3 cut(s)	25, 329, 587
DdeI	CTNAG	2 cut(s)	252, 468
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	3, 261
EarI	CTCTTC	2 cut(s)	3, 261
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	507
Eco47III	AGCGCT	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	342, 556
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 435, 467
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	16, 93, 311, 347, 475, 654
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
FokI	GGATG	2 cut(s)	23, 146
Fsp4HI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
FspBI	CTAG	2 cut(s)	540, 667
GlaI	GCGC	2 cut(s)	149, 279
GluI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	4 cut(s)	197, 393, 580, 643
HgaI	GACGC	2 cut(s)	122, 552
HhaI	GCGC	2 cut(s)	150, 280
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
Hin6I	GCGC	2 cut(s)	148, 278
HinP1I	GCGC	2 cut(s)	148, 278
HincII	GTYRAC	2 cut(s)	91, 361
HindII	GTYRAC	2 cut(s)	91, 361
HinfI	GANTC	3 cut(s)	71, 464, 633
HpaI	GTTAAC	1 cut(s)	361
Hpy166II	GTNNAC	4 cut(s)	25, 91, 99, 361
Hpy188I	TCNGA	3 cut(s)	459, 469, 638
Hpy188III	TCNNGA	2 cut(s)	443, 574
Hpy8I	GTNNAC	4 cut(s)	25, 91, 99, 361
Hpy99I	CGWCG	4 cut(s)	89, 110, 113, 116
HpyAV	CCTTC	5 cut(s)	148, 202, 484, 616, 633
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	193, 242, 311, 315, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
HpyF3I	CTNAG	2 cut(s)	252, 468
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
HspAI	GCGC	2 cut(s)	148, 278
KspAI	GTTAAC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	29, 127
Lsp1109I	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
LweI	GCATC	2 cut(s)	180, 265
MaeI	CTAG	2 cut(s)	540, 667
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	367, 563
MboII	GAAGA	4 cut(s)	20, 154, 278, 335
MfeI	CAATTG	1 cut(s)	485
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	386, 419, 485, 530
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	4, 13, 52, 157, 160, 191, 262, 439, 570
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	438, 530
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	239, 245
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
NdeI	CATATG	1 cut(s)	583
NlaIII	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	3 cut(s)	97, 315, 658
PaeI	GCATGC	1 cut(s)	315
PciI	ACATGT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	2 cut(s)	438, 530
PfeI	GAWTC	2 cut(s)	464, 633
PkrI	GCNGC	8 cut(s)	118, 175, 178, 223, 238, 241, 244, 336
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	93
PshAI	GACNNNNGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	517
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	26, 330, 588
RsaNI	GTAC	3 cut(s)	25, 329, 587
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	519
SetI	ASST	9 cut(s)	24, 90, 132, 175, 204, 247, 322, 495, 627
SfaNI	GCATC	2 cut(s)	180, 265
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	507
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	4 cut(s)	386, 419, 485, 530
SsiI	CCGC	5 cut(s)	102, 117, 237, 535, 568
SspMI	CTAG	2 cut(s)	540, 667
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	90
TasI	AATT	4 cut(s)	386, 419, 485, 530
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	2 cut(s)	119, 239
TfiI	GAWTC	2 cut(s)	464, 633
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	6 cut(s)	173, 176, 221, 239, 242, 334
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	155, 477, 539
TspGWI	ACGGA	2 cut(s)	42, 173
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	2 cut(s)	386, 419
XceI	RCATGY	3 cut(s)	97, 315, 658
XmnI	GAANNNNTTC	2 cut(s)	438, 530
XspI	CTAG	2 cut(s)	540, 667
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.