Rh2AG236400

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001968
Physical Location & Seq
Forward (+)
25582113 .. 25585555
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG236400.1

Sequence Viewer

Length: 579 bp
ATGCAGGCCAATGGGGCGAAGGAGAACGGTGCTGCGCAAGGAAAAAAAAAGAAGTGGAGTGAATTTCACAGTAGATATTCGAAGAGAAGGATGGAGAAGGAGGAGGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCGAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGAAGCTGTTCAAAAGGCTCTTCTTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTTCCTGGATATAAGCAATTCCGCCCTAGACGTTTCAATCCGTATATGGGTTACTGCATCAGGAGGCCTTATGTACCTCCTTACTTCTATTCGCCCTATGGATATGGGTATGGTGCTCTTACTTTCAATGCTTTCTATTGGTCAAGTGATATTTTTGATGCATATTATCATTTTTTCCCTTTCAAATATGCTGCAGGAAAGTTCCCAGGTTCAGAAGTCCAGCACAATACATGCCCTACTAGTAGAAGACTTTTCATCTGA

Protein Analysis

192

Amino Acids

22.48

Weight (kDa)

9.39

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 99 1.6e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 36
AciI CCGC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 3 cut(s) 62, 191, 224
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 135, 393
AfiI CCNNNNNNNGG 2 cut(s) 205, 365
AgsI TTSAA 6 cut(s) 233, 248, 295, 355, 445, 502
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 2 cut(s) 322, 523
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 436
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 6, 196, 383
ApeKI GCWGC 3 cut(s) 32, 139, 509
ApoI RAATTY 3 cut(s) 62, 191, 224
Asp700I GAANNNNTTC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 312
AsuII TTCGAA 2 cut(s) 80, 147
AvaII GGWCC 1 cut(s) 312
BalI TGGCCA 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 3 cut(s) 19, 151, 496
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 2 cut(s) 324, 525
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 2 cut(s) 345, 558
BfmI CTRYAG 1 cut(s) 510
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 33, 140, 510
BlsI GCNGC 3 cut(s) 34, 141, 511
Bme1390I CCNGG 2 cut(s) 324, 525
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 324, 525
BmsI GCATC 2 cut(s) 384, 466
BpiI GAAGAC 1 cut(s) 571
Bpu14I TTCGAA 2 cut(s) 80, 147
BsaJI CCNNGG 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 365
BseBI CCWGG 2 cut(s) 324, 525
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 205, 365
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 3 cut(s) 19, 151, 496
BshFI GGCC 3 cut(s) 8, 198, 385
BsiHKAI GWGCWC 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 205, 365
BsnI GGCC 3 cut(s) 8, 198, 385
Bsp119I TTCGAA 2 cut(s) 80, 147
Bsp1286I GDGCHC 1 cut(s) 436
BspACI CCGC 1 cut(s) 340
BspANI GGCC 3 cut(s) 8, 198, 385
BspCNI CTCAG 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 514
BspQI GCTCTTC 1 cut(s) 261
BspT104I TTCGAA 2 cut(s) 80, 147
BssECI CCNNGG 1 cut(s) 523
Bst2UI CCWGG 2 cut(s) 324, 525
Bst4CI ACNGT 3 cut(s) 29, 71, 163
Bst6I CTCTTC 2 cut(s) 77, 261
BstBI TTCGAA 2 cut(s) 80, 147
BstC8I GCNNGC 2 cut(s) 6, 118
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 14, 286
BstNI CCWGG 2 cut(s) 324, 525
BstNSI RCATGY 2 cut(s) 120, 552
BstSCI CCNGG 2 cut(s) 322, 523
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 19, 151, 496
BstV2I GAAGAC 1 cut(s) 571
BsuRI GGCC 3 cut(s) 8, 198, 385
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 6, 118
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 2 cut(s) 134, 392
CviAII CATG 4 cut(s) 117, 153, 281, 549
CviJI RGCY 5 cut(s) 8, 198, 242, 254, 385
CviKI_1 RGCY 5 cut(s) 8, 198, 242, 254, 385
CviQI GTAC 2 cut(s) 134, 392
DdeI CTNAG 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 77, 261
EarI CTCTTC 2 cut(s) 77, 261
EciI GGCGGA 1 cut(s) 329
Eco147I AGGCCT 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 322, 523
EcoT22I ATGCAT 2 cut(s) 118, 481
FaeI CATG 4 cut(s) 120, 156, 284, 552
FatI CATG 4 cut(s) 116, 152, 280, 548
Fnu4HI GCNGC 3 cut(s) 33, 140, 510
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 33, 140, 510
FspBI CTAG 2 cut(s) 345, 558
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 33, 140, 510
HaeIII GGCC 3 cut(s) 8, 198, 385
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 120, 156, 284, 552
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 2 cut(s) 149, 269
HpaI GTTAAC 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 4 cut(s) 264, 274, 532, 578
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 4 cut(s) 13, 81, 91, 289
HpyCH4III ACNGT 3 cut(s) 29, 71, 163
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 7 cut(s) 4, 116, 120, 280, 375, 479, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 286
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 4 cut(s) 120, 156, 284, 552
HspAI GCGC 1 cut(s) 35
KspAI GTTAAC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 138, 309, 336, 364, 498, 510, 537, 551
Lsp1109I GCAGC 3 cut(s) 19, 151, 496
LweI GCATC 2 cut(s) 384, 466
MaeI CTAG 2 cut(s) 345, 558
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 2 cut(s) 172, 368
MboII GAAGA 5 cut(s) 94, 140, 248, 251, 576
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 436
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 5 cut(s) 62, 191, 224, 290, 335
MluNI TGGCCA 1 cut(s) 198
MnlI CCTC 4 cut(s) 94, 97, 375, 405
Mox20I TGGCCA 1 cut(s) 198
Mph1103I ATGCAT 2 cut(s) 118, 481
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 324, 525
MunI CAATTG 1 cut(s) 290
MvaI CCWGG 2 cut(s) 324, 525
MwoI GCNNNNNNNGC 2 cut(s) 14, 286
NlaIII CATG 4 cut(s) 120, 156, 284, 552
NmuCI GTSAC 1 cut(s) 172
NsbI TGCGCA 1 cut(s) 36
NsiI ATGCAT 2 cut(s) 118, 481
NspI RCATGY 2 cut(s) 120, 552
NspV TTCGAA 2 cut(s) 80, 147
PaeI GCATGC 1 cut(s) 120
PceI AGGCCT 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 149, 269
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 3 cut(s) 34, 141, 511
Psp6I CCWGG 2 cut(s) 322, 523
PspGI CCWGG 2 cut(s) 322, 523
PspPI GGNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 135, 393
RsaNI GTAC 2 cut(s) 134, 392
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 3 cut(s) 33, 140, 510
Sau96I GGNCC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 324, 525
SduI GDGCHC 1 cut(s) 436
SetI ASST 7 cut(s) 108, 127, 244, 300, 352, 397, 529
SfaNI GCATC 2 cut(s) 384, 466
SfcI CTRYAG 1 cut(s) 510
SfuI TTCGAA 2 cut(s) 80, 147
SinI GGWCC 1 cut(s) 312
SpeI ACTAGT 1 cut(s) 557
SphI GCATGC 1 cut(s) 120
Sse9I AATT 5 cut(s) 62, 191, 224, 290, 335
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 1 cut(s) 340
SspMI CTAG 2 cut(s) 345, 558
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 2 cut(s) 322, 523
TaaI ACNGT 3 cut(s) 29, 71, 163
TaiI ACGT 1 cut(s) 352
TaqI TCGA 2 cut(s) 80, 147
TasI AATT 5 cut(s) 62, 191, 224, 290, 335
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 2 cut(s) 149, 269
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 32, 139, 509
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 282, 562
TspGWI ACGGA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 3 cut(s) 62, 191, 224
XceI RCATGY 2 cut(s) 120, 552
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 2 cut(s) 345, 558
Zsp2I ATGCAT 2 cut(s) 118, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.