Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

12642640 .. 12646581

Gene Structure 3942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCCGAAGAAGAGCATGAGGTGTACGGAGCAGAAATTCCAGACGAGGCGGAGATGGACGGCGACTTCGACCACGATGACATGTCCACCGCCCAAGACGACGACGACGACGACGCCGCCGCCGTTGTCAAGGAGGAGGAGGAAGCTGCGGCTCTCCGCGAGATGCAGACCAATGCGGCGAAGGAGATGAGTTCTGCGCAAGATCCTGCTACTGGAGCTGTTTCTCAGGCAAACAAGGAAGTGGCTGATGAATGTTCTGTTTACGTTGGCAACGTTGATTATGCATGCACACCTGAGGAAGTACCGCAGCATTTCGAATCATGTGGCACAGTTAACAGGGTGACTATACCAACAGATAAATTTGGCCAACCAAAGGGTTATGCCTATGTGGAATTCCTGGAAGCAGAAGCTGTTCAAAAGGCTCTTGCTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAAGTTTTACCTAAAAGAACCAATGTTCCTGGTATGAAGCAATTCCGCCCCAGACGTTTCAATCCCTATATGGGTTACAGCTTCAGGAGGCCTTATGTACCACCTTACTTCTATTCACCTTATGGATATGGGAAGGTTCCCAGGTTCAGAAGGCCAGCAAGATACATGCCCTACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

4.65

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	87 - 155	3.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	198
AccII	CGCG	1 cut(s)	159
AciI	CCGC	9 cut(s)	50, 90, 117, 120, 149, 157, 176, 305, 508
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	3, 364
AcsI	RAATTY	3 cut(s)	36, 359, 392
AcuI	CTGAAG	1 cut(s)	529
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	26, 303, 561
AfiI	CCNNNNNNNGG	3 cut(s)	212, 373, 533
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	416, 463, 523
AjnI	CCWGG	3 cut(s)	396, 490, 602
AloI	GAACNNNNNNTCC	2 cut(s)	472, 504
AluBI	AGCT	4 cut(s)	146, 218, 410, 543
AluI	AGCT	4 cut(s)	146, 218, 410, 543
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	4 cut(s)	3, 364, 551, 614
ApeKI	GCWGC	2 cut(s)	146, 307
ApoI	RAATTY	3 cut(s)	36, 359, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	2 cut(s)	411, 503
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	352, 570
AsuII	TTCGAA	1 cut(s)	315
AxyI	CCTNAGG	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	133, 319
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	2 cut(s)	76, 107
BciT130I	CCWGG	3 cut(s)	398, 492, 604
BisI	GCNGC	6 cut(s)	117, 120, 147, 150, 177, 308
BlsI	GCNGC	6 cut(s)	118, 121, 148, 151, 178, 309
Bme1390I	CCNGG	3 cut(s)	398, 492, 604
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	398, 492, 604
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 373, 533
Bse1I	ACTGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	398, 492, 604
BseDI	CCNNGG	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	212, 373, 533
BseMII	CTCAG	3 cut(s)	239, 285, 432
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	149, 152
BseXI	GCAGC	2 cut(s)	133, 319
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	5, 366, 553, 616
BslI	CCNNNNNNNGG	3 cut(s)	212, 373, 533
BsnI	GGCC	4 cut(s)	5, 366, 553, 616
Bsp119I	TTCGAA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	9 cut(s)	50, 90, 117, 120, 149, 157, 176, 305, 508
BspANI	GGCC	4 cut(s)	5, 366, 553, 616
BspCNI	CTCAG	3 cut(s)	238, 286, 433
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	398, 492, 604
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	286, 618
BstDEI	CTNAG	3 cut(s)	225, 294, 441
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 454
BstNI	CCWGG	3 cut(s)	398, 492, 604
BstNSI	RCATGY	3 cut(s)	85, 288, 631
BstSCI	CCNGG	3 cut(s)	396, 490, 602
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	133, 319
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	5, 366, 553, 616
Cac8I	GCNNGC	2 cut(s)	286, 618
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	199
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	25, 302, 560
CviAII	CATG	6 cut(s)	17, 82, 285, 321, 449, 628
CviQI	GTAC	3 cut(s)	25, 302, 560
DdeI	CTNAG	3 cut(s)	225, 294, 441
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	2 cut(s)	3, 364
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EciI	GGCGGA	2 cut(s)	65, 497
Eco147I	AGGCCT	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	529
Eco81I	CCTNAGG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	396, 490, 602
EcoT22I	ATGCAT	1 cut(s)	286
FaeI	CATG	6 cut(s)	20, 85, 288, 324, 452, 631
FatI	CATG	6 cut(s)	16, 81, 284, 320, 448, 627
Fnu4HI	GCNGC	6 cut(s)	117, 120, 147, 150, 177, 308
Fsp4HI	GCNGC	6 cut(s)	117, 120, 147, 150, 177, 308
FspI	TGCGCA	1 cut(s)	198
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	6 cut(s)	117, 120, 147, 150, 177, 308
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	5, 366, 553, 616
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	20, 85, 288, 324, 452, 631
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	317, 437
HpaI	GTTAAC	1 cut(s)	334
HphI	GGTGA	2 cut(s)	352, 570
Hpy166II	GTNNAC	4 cut(s)	25, 87, 262, 334
Hpy188I	TCNGA	3 cut(s)	432, 442, 611
Hpy188III	TCNNGA	2 cut(s)	41, 547
Hpy8I	GTNNAC	4 cut(s)	25, 87, 262, 334
Hpy99I	CGWCG	5 cut(s)	104, 107, 110, 113, 116
HpyAV	CCTTC	3 cut(s)	175, 589, 606
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	3 cut(s)	264, 273, 517
HpyCH4V	TGCA	4 cut(s)	166, 284, 288, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 454
HpyF3I	CTNAG	3 cut(s)	225, 294, 441
HpySE526I	ACGT	3 cut(s)	264, 273, 517
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	20, 85, 288, 324, 452, 631
HspAI	GCGC	1 cut(s)	197
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	29, 215
Lsp1109I	GCAGC	2 cut(s)	133, 319
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	3 cut(s)	264, 273, 517
MaeIII	GTNAC	2 cut(s)	340, 536
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	20, 23
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	5 cut(s)	36, 359, 392, 458, 503
MluNI	TGGCCA	1 cut(s)	366
MnlI	CCTC	7 cut(s)	13, 40, 127, 130, 133, 289, 543
Mox20I	TGGCCA	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	2 cut(s)	411, 503
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	366
MspR9I	CCNGG	3 cut(s)	398, 492, 604
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	3 cut(s)	398, 492, 604
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	215, 454
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	6 cut(s)	20, 85, 288, 324, 452, 631
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	340
NsbI	TGCGCA	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	3 cut(s)	85, 288, 631
NspV	TTCGAA	1 cut(s)	315
PaeI	GCATGC	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	5 cut(s)	66, 105, 108, 120, 270
PdmI	GAANNNNTTC	2 cut(s)	411, 503
PfeI	GAWTC	2 cut(s)	317, 437
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	6 cut(s)	118, 121, 148, 151, 178, 309
PscI	ACATGT	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	396, 490, 602
PspGI	CCWGG	3 cut(s)	396, 490, 602
PspN4I	GGNNCC	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	3 cut(s)	26, 303, 561
RsaNI	GTAC	3 cut(s)	25, 302, 560
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	6 cut(s)	117, 120, 147, 150, 177, 308
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	398, 492, 604
SfaNI	GCATC	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	315
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	5 cut(s)	36, 359, 392, 458, 503
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	9 cut(s)	50, 90, 117, 120, 149, 157, 176, 305, 508
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	396, 490, 602
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	3 cut(s)	267, 276, 520
TaqI	TCGA	2 cut(s)	69, 315
TasI	AATT	5 cut(s)	36, 359, 392, 458, 503
TauI	GCSGC	4 cut(s)	119, 122, 152, 179
TfiI	GAWTC	2 cut(s)	317, 437
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	146, 307
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	264, 450, 512
TspGWI	ACGGA	1 cut(s)	42
XapI	RAATTY	3 cut(s)	36, 359, 392
XceI	RCATGY	3 cut(s)	85, 288, 631
XmnI	GAANNNNTTC	2 cut(s)	411, 503
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.