Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

19855402 .. 19859760

Gene Structure 4359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G191400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGGAGGAGGAGCATGAGGTGTACGGAGGAGAGATCCCAGACGAGGGAGAAATGGAGGGGGATATTGAAGCTCATCATGCTGACGTTGACATGTCCACCGCCGACGACGACGCCGTCAAGGAGTTGGACGAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGCGAGATGCAGGCTAAGGTTGAGAAGGAAATGGGCGCTGTTCAAGATCCTGCAGCTGTGGCTGCTTCTCAAGCAAACAAAGAAGAGGTGGATGCACGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGCACAGTTAATAGAGTGACTATACTGACAGATAAATTCGGCCAACCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAACAGAAGCTGTTCAAGAGGCTCTCGTTCTAAATGAATCTGAGTTGCATGGGCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTTCCTGGTATGAAGCAATACAGACCTAGACGCTTCAATCCTTATATGGGTTACCGCTTCAGGAGGCCATATGTACCTCCTTACTTTTACTCCCCCTATGGATATGGGAAAGTTCCCAGGTTCCGAAGGCCAGCTCGATACATGCCGTATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

222

Amino Acids

25.45

Weight (kDa)

5.01

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	102, 145, 478, 565
AclWI	GGATC	2 cut(s)	31, 221
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	383, 416
AcuI	CTGAAG	2 cut(s)	339, 553
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	26, 585
AfiI	CCNNNNNNNGG	4 cut(s)	46, 47, 397, 557
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	7 cut(s)	71, 151, 224, 425, 440, 487, 547
AjnI	CCWGG	2 cut(s)	514, 626
AluBI	AGCT	5 cut(s)	74, 170, 236, 434, 644
AluI	AGCT	5 cut(s)	74, 170, 236, 434, 644
AlwI	GGATC	2 cut(s)	31, 221
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	388, 575, 638
ApeKI	GCWGC	6 cut(s)	170, 173, 233, 242, 328, 331
ApoI	RAATTY	2 cut(s)	383, 416
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	504
BbvI	GCAGC	6 cut(s)	157, 160, 229, 245, 340, 343
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	2 cut(s)	101, 640
BciT130I	CCWGG	2 cut(s)	516, 628
BfaI	CTAG	2 cut(s)	537, 664
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	7 cut(s)	171, 174, 234, 243, 329, 332, 479
BlsI	GCNGC	7 cut(s)	172, 175, 235, 244, 330, 333, 480
Bme1390I	CCNGG	2 cut(s)	516, 628
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	632
BmrFI	CCNGG	2 cut(s)	516, 628
BmsI	GCATC	2 cut(s)	177, 262
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 47, 397, 557
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	516, 628
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	46, 47, 397, 557
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	5 cut(s)	20, 23, 26, 45, 176
BseXI	GCAGC	6 cut(s)	157, 160, 229, 245, 340, 343
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	390, 577, 640
BslI	CCNNNNNNNGG	4 cut(s)	46, 47, 397, 557
BsnI	GGCC	3 cut(s)	390, 577, 640
Bsp143I	GATC	3 cut(s)	36, 226, 278
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	4 cut(s)	102, 145, 478, 565
BspANI	GGCC	3 cut(s)	390, 577, 640
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	632
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	2 cut(s)	31, 221
BspQI	GCTCTTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	3 cut(s)	36, 226, 278
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	516, 628
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	183, 258
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	192, 310, 642
BstDEI	CTNAG	2 cut(s)	195, 465
BstEII	GGTNACC	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	39, 229, 281
BstMBI	GATC	3 cut(s)	36, 226, 278
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 239, 242, 251, 478
BstNI	CCWGG	2 cut(s)	516, 628
BstNSI	RCATGY	3 cut(s)	97, 312, 655
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	514, 626
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	6 cut(s)	157, 160, 229, 245, 340, 343
BstX2I	RGATCY	2 cut(s)	36, 226
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	2 cut(s)	36, 226
BsuRI	GGCC	3 cut(s)	390, 577, 640
BtsCI	GGATG	1 cut(s)	277
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	192, 310, 642
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	504
CseI	GACGC	2 cut(s)	122, 549
Csp6I	GTAC	2 cut(s)	25, 584
CviAII	CATG	7 cut(s)	17, 80, 94, 309, 345, 473, 652
CviQI	GTAC	2 cut(s)	25, 584
DdeI	CTNAG	2 cut(s)	195, 465
DpnI	GATC	3 cut(s)	38, 228, 280
DpnII	GATC	3 cut(s)	36, 226, 278
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	183, 258
EarI	CTCTTC	2 cut(s)	183, 258
Eco47I	GGWCC	1 cut(s)	504
Eco57I	CTGAAG	2 cut(s)	339, 553
Eco91I	GGTNACC	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	514, 626
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	7 cut(s)	20, 83, 97, 312, 348, 476, 655
FatI	CATG	7 cut(s)	16, 79, 93, 308, 344, 472, 651
FauNDI	CATATG	1 cut(s)	580
Fnu4HI	GCNGC	7 cut(s)	171, 174, 234, 243, 329, 332, 479
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	171, 174, 234, 243, 329, 332, 479
FspBI	CTAG	2 cut(s)	537, 664
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	7 cut(s)	171, 174, 234, 243, 329, 332, 479
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	390, 577, 640
HgaI	GACGC	2 cut(s)	122, 549
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	7 cut(s)	20, 83, 97, 312, 348, 476, 655
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	461
Hpy166II	GTNNAC	3 cut(s)	25, 91, 99
Hpy188I	TCNGA	2 cut(s)	466, 635
Hpy188III	TCNNGA	4 cut(s)	182, 224, 440, 571
Hpy8I	GTNNAC	3 cut(s)	25, 91, 99
Hpy99I	CGWCG	3 cut(s)	110, 113, 116
HpyAV	CCTTC	4 cut(s)	145, 199, 481, 630
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	7 cut(s)	190, 233, 275, 308, 312, 328, 472
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 239, 242, 251, 478
HpyF3I	CTNAG	2 cut(s)	195, 465
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	7 cut(s)	20, 83, 97, 312, 348, 476, 655
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	36, 226, 278
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	6 cut(s)	157, 160, 229, 245, 340, 343
LweI	GCATC	2 cut(s)	177, 262
MaeI	CTAG	2 cut(s)	537, 664
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	364, 560
MalI	GATC	3 cut(s)	38, 228, 280
MboI	GATC	3 cut(s)	36, 226, 278
MboII	GAAGA	4 cut(s)	151, 170, 275, 332
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	2 cut(s)	36, 226
MluCI	AATT	3 cut(s)	383, 416, 482
MmeI	TCCRAC	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	516, 628
MunI	CAATTG	1 cut(s)	482
MvaI	CCWGG	2 cut(s)	516, 628
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	80, 239, 242, 251, 478
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	3 cut(s)	36, 226, 278
NlaIII	CATG	7 cut(s)	20, 83, 97, 312, 348, 476, 655
NlaIV	GGNNCC	1 cut(s)	632
NmuCI	GTSAC	1 cut(s)	364
NruI	TCGCGA	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	3 cut(s)	97, 312, 655
PaeI	GCATGC	1 cut(s)	312
PciI	ACATGT	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	461
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	7 cut(s)	172, 175, 235, 244, 330, 333, 480
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	514, 626
PspEI	GGTNACC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	514, 626
PspN4I	GGNNCC	1 cut(s)	632
PspPI	GGNCC	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	36, 226
PsyI	GACNNNGTC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	236
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	2 cut(s)	26, 585
RsaNI	GTAC	2 cut(s)	25, 584
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	7 cut(s)	171, 174, 234, 243, 329, 332, 479
Sau3AI	GATC	3 cut(s)	36, 226, 278
Sau96I	GGNCC	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	516, 628
SfaNI	GCATC	2 cut(s)	177, 262
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	3 cut(s)	383, 416, 482
SsiI	CCGC	4 cut(s)	102, 145, 478, 565
SspMI	CTAG	2 cut(s)	537, 664
StyD4I	CCNGG	2 cut(s)	514, 626
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	646
TasI	AATT	3 cut(s)	383, 416, 482
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	6 cut(s)	170, 173, 233, 242, 328, 331
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	152, 474, 536
TspGWI	ACGGA	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	2 cut(s)	383, 416
XceI	RCATGY	3 cut(s)	97, 312, 655
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	2 cut(s)	537, 664
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.