Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

67803509 .. 67808321

Gene Structure 4813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGACGAAGAGGAACATGAGGTGTACGGAGCAGACATCCCAGACGAGACAGAAATGGAGGGCGACTTGGACTCCCATAACGCCGACGTTGACATGAACGCCGACGTTGACATGTCCACCGCCGACGACGACGCCGCCGTCAAGGAGCTGGATGAGATGAAGAAGCGCTTGAAGGAGATGGAGGAGGAAGCTGCTGCCCTCCGTGAGATGCAGGCCAAGGTTGAGAAGGAAATGGGTGCTGCCCAAGACCCTGCTGCTGCAGCTGTTTCTCAGGCACACAAGGAAGAGGCTGATGCGCGTTCTGTTTTTGTTGGCAATGCTTCAACTTCAATACAAGAGAGGGGGTGCGTCTTTGAAGAGGAAAGGAAAGATGGGTTTGCAACTGTAGTTGCAGAGGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCCAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGAAGCTGTTCAAGAGGCTCTTGTTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTCCCTGGTATGAAGCAATTCCGCCCTAGACGCTTCAATCCTTATATGGGTTACCGCTTCAGGAGGCCATATGTAGCCCCTTACTTCTACTCTCCTTATGGATATGGGTATGTTCTCTTACTTTCACTGTCTTCTGTTAGTCAAGAAGGTTCCCAGATTCAGAAGGCCAGCACGATACATGCCCTACTACTAGAAGACTGTTTGCATCTGAATGATGGTTACATCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

279

Amino Acids

31.33

Weight (kDa)

4.6

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	130 - 196	4.2e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	298
AciI	CCGC	4 cut(s)	120, 135, 631, 664
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	2 cut(s)	482, 515
AcuI	CTGAAG	2 cut(s)	438, 652
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	26, 426
AfeI	AGCGCT	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	496, 656
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	8 cut(s)	172, 324, 330, 356, 524, 539, 586, 646
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	4 cut(s)	148, 191, 263, 533
AluI	AGCT	4 cut(s)	148, 191, 263, 533
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	533
Aor51HI	AGCGCT	1 cut(s)	167
AoxI	GGCC	4 cut(s)	213, 487, 674, 774
ApeKI	GCWGC	7 cut(s)	191, 194, 239, 254, 257, 260, 430
ApoI	RAATTY	2 cut(s)	482, 515
Asp700I	GAANNNNTTC	2 cut(s)	534, 626
AspLEI	GCGC	2 cut(s)	168, 298
AspS9I	GGNCC	1 cut(s)	603
AvaII	GGWCC	1 cut(s)	603
BalI	TGGCCA	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	732, 810
BbvI	GCAGC	7 cut(s)	178, 181, 226, 241, 244, 272, 442
BccI	CCATC	3 cut(s)	172, 365, 818
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	636, 800, 838
BfmI	CTRYAG	2 cut(s)	258, 384
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	8 cut(s)	135, 192, 195, 240, 255, 258, 261, 431
BlsI	GCNGC	8 cut(s)	136, 193, 196, 241, 256, 259, 262, 432
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	3 cut(s)	198, 283, 823
BoxI	GACNNNNGTC	1 cut(s)	608
BpiI	GAAGAC	2 cut(s)	732, 810
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	216, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 656
Bse3DI	GCAATG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	216, 613
BseGI	GGATG	2 cut(s)	36, 157
BseLI	CCNNNNNNNGG	2 cut(s)	496, 656
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	284, 555
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	7 cut(s)	178, 181, 226, 241, 244, 272, 442
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	215, 489, 676, 776
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	496, 656
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	4 cut(s)	215, 489, 676, 776
BspACI	CCGC	4 cut(s)	120, 135, 631, 664
BspANI	GGCC	4 cut(s)	215, 489, 676, 776
BspCNI	CTCAG	2 cut(s)	283, 556
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	216, 613
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	4 cut(s)	385, 454, 738, 809
Bst6I	CTCTTC	3 cut(s)	3, 279, 351
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	213, 409, 778
BstDEI	CTNAG	2 cut(s)	270, 564
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	2 cut(s)	36, 157
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	168, 298
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 577, 639
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	3 cut(s)	115, 411, 791
BstPAI	GACNNNNGTC	1 cut(s)	608
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	2 cut(s)	258, 384
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	7 cut(s)	178, 181, 226, 241, 244, 272, 442
BstV2I	GAAGAC	2 cut(s)	732, 810
BstXI	CCANNNNNNTGG	1 cut(s)	446
BsuRI	GGCC	4 cut(s)	215, 489, 676, 776
BtsCI	GGATG	2 cut(s)	36, 157
BtsIMutI	CAGTG	1 cut(s)	734
Cac8I	GCNNGC	3 cut(s)	213, 409, 778
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	2 cut(s)	168, 298
Cfr13I	GGNCC	1 cut(s)	603
CseI	GACGC	3 cut(s)	140, 337, 648
Csp6I	GTAC	2 cut(s)	25, 425
CviAII	CATG	7 cut(s)	17, 94, 112, 408, 444, 572, 788
CviQI	GTAC	2 cut(s)	25, 425
DdeI	CTNAG	2 cut(s)	270, 564
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	3 cut(s)	3, 279, 351
EarI	CTCTTC	3 cut(s)	3, 279, 351
EciI	GGCGGA	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	603
Eco47III	AGCGCT	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	438, 652
Eco91I	GGTNACC	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	7 cut(s)	20, 97, 115, 411, 447, 575, 791
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 531, 563
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	7 cut(s)	16, 93, 111, 407, 443, 571, 787
FauNDI	CATATG	1 cut(s)	679
Fnu4HI	GCNGC	8 cut(s)	135, 192, 195, 240, 255, 258, 261, 431
FokI	GGATG	2 cut(s)	23, 164
Fsp4HI	GCNGC	8 cut(s)	135, 192, 195, 240, 255, 258, 261, 431
FspBI	CTAG	3 cut(s)	636, 800, 838
GlaI	GCGC	2 cut(s)	167, 297
GluI	GCNGC	8 cut(s)	135, 192, 195, 240, 255, 258, 261, 431
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	215, 489, 676, 776
HgaI	GACGC	3 cut(s)	140, 337, 648
HhaI	GCGC	2 cut(s)	168, 298
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	20, 97, 115, 411, 447, 575, 791
Hin6I	GCGC	2 cut(s)	166, 296
HinP1I	GCGC	2 cut(s)	166, 296
HincII	GTYRAC	3 cut(s)	91, 109, 457
HindII	GTYRAC	3 cut(s)	91, 109, 457
HinfI	GANTC	3 cut(s)	71, 560, 766
HpaI	GTTAAC	1 cut(s)	457
Hpy166II	GTNNAC	5 cut(s)	25, 91, 109, 117, 457
Hpy188I	TCNGA	4 cut(s)	555, 565, 771, 819
Hpy188III	TCNNGA	3 cut(s)	539, 670, 752
Hpy8I	GTNNAC	5 cut(s)	25, 91, 109, 117, 457
Hpy99I	CGWCG	5 cut(s)	89, 107, 128, 131, 134
HpyAV	CCTTC	5 cut(s)	166, 220, 580, 749, 766
HpyCH4III	ACNGT	4 cut(s)	385, 454, 738, 809
HpyCH4IV	ACGT	2 cut(s)	87, 105
HpyCH4V	TGCA	8 cut(s)	211, 260, 380, 392, 407, 411, 571, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 577, 639
HpyF3I	CTNAG	2 cut(s)	270, 564
HpySE526I	ACGT	2 cut(s)	87, 105
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	20, 97, 115, 411, 447, 575, 791
HspAI	GCGC	2 cut(s)	166, 296
KspAI	GTTAAC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	29, 145
Lsp1109I	GCAGC	7 cut(s)	178, 181, 226, 241, 244, 272, 442
LweI	GCATC	3 cut(s)	198, 283, 823
MaeI	CTAG	3 cut(s)	636, 800, 838
MaeII	ACGT	2 cut(s)	87, 105
MaeIII	GTNAC	3 cut(s)	463, 659, 827
MboII	GAAGA	7 cut(s)	20, 172, 296, 368, 431, 732, 815
MfeI	CAATTG	1 cut(s)	581
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	482, 515, 581, 626
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	65
Mox20I	TGGCCA	1 cut(s)	489
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	2 cut(s)	534, 626
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	3 cut(s)	260, 577, 639
NdeI	CATATG	1 cut(s)	679
NlaIII	CATG	7 cut(s)	20, 97, 115, 411, 447, 575, 791
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	3 cut(s)	115, 411, 791
PaeI	GCATGC	1 cut(s)	411
PciI	ACATGT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	534, 626
PfeI	GAWTC	2 cut(s)	560, 766
PkrI	GCNGC	8 cut(s)	136, 193, 196, 241, 256, 259, 262, 432
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	111
PshAI	GACNNNNGTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	613
PspEI	GGTNACC	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	603
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	26, 426
RsaNI	GTAC	2 cut(s)	25, 425
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	8 cut(s)	135, 192, 195, 240, 255, 258, 261, 431
Sau96I	GGNCC	1 cut(s)	603
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	615
SfaNI	GCATC	3 cut(s)	198, 283, 823
SfcI	CTRYAG	2 cut(s)	258, 384
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	819
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	4 cut(s)	482, 515, 581, 626
SsiI	CCGC	4 cut(s)	120, 135, 631, 664
SspMI	CTAG	3 cut(s)	636, 800, 838
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	385, 454, 738, 809
TaiI	ACGT	2 cut(s)	90, 108
TasI	AATT	4 cut(s)	482, 515, 581, 626
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	560, 766
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	7 cut(s)	191, 194, 239, 254, 257, 260, 430
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	110, 173, 573, 635
TspGWI	ACGGA	2 cut(s)	42, 191
TspRI	CASTG	1 cut(s)	741
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	2 cut(s)	482, 515
XceI	RCATGY	3 cut(s)	115, 411, 791
XmnI	GAANNNNTTC	2 cut(s)	534, 626
XspI	CTAG	3 cut(s)	636, 800, 838
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.