Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

67809166 .. 67813397

Gene Structure 4232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCGAAGAAAAGCATGAGGTGTACGGAGCAGAAATTCCATACGAGGCGGAGATGGACTGCGACTTCGACCCCCATCCCGACGACGATGACATCTCCACCGCCCACGGCAACGAATCCGCCGTCAAGGAGGAGGAAGATTCGGCTCTCCGCGAGATGCAGGCCTATGGGGCGAAGGAGATGGCTGCTGCGCAAGATCCTGCTACTGCAGCTGATTCTCAGGCAAACAAGGAAGCAGCTGATCAATGTTCTGTTTTCGTTGGCAATGAGAGGGCTGCAAATGCCTCTGAAGAGGAAAGGAAAGATGGGTTTACAACTGTAGTTACAGGGCTTCTGCTGCTGGATGCTGTTGTTTGGTGCCTATGTAGCAAATGCGGTTATCACAAGCTGAAAAGGCAGATGAATTTTGAAAAGGTTGATTATGCATGCACACCTGAAGAAGTAAAGCAGCATTTCGAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGAAACTGTTCAAAAGGCTCTTGTTCTGAATGAATCCGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTTCCTGGATATAAGCAATTCCGCCCTAGACGTTTCAATCCGTATATGGGTTACTGCATCAGGAGGCCTTATGTACCTCCTTACTTCTATTCGCCCTATGTATATGGGAAAGTTCCCAGAGGCAGTGATAACAAAATGGAAGTAGGGAGAGAAAAGTATTTGTGGCTGCCCTTCACAGTCAGAGTGTCCTCTGAACTGGTTCAGAATCCACCTCCTACCCTTTTTCTTATCCCGCAGGCTGATGCAGTTTCAGCTCCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

5.1

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	140 - 202	5.5e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	357
AccII	CGCG	1 cut(s)	153
AciI	CCGC	7 cut(s)	50, 102, 120, 151, 375, 649, 860
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	3, 505
AcsI	RAATTY	4 cut(s)	36, 403, 500, 533
AcuI	CTGAAG	2 cut(s)	309, 456
AfaI	GTAC	2 cut(s)	26, 702
AfiI	CCNNNNNNNGG	2 cut(s)	514, 674
AgsI	TTSAA	5 cut(s)	410, 542, 557, 604, 664
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	4 cut(s)	212, 239, 388, 881
AluI	AGCT	4 cut(s)	212, 239, 388, 881
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	4 cut(s)	3, 162, 505, 692
ApeKI	GCWGC	8 cut(s)	185, 188, 209, 236, 275, 337, 448, 793
ApoI	RAATTY	4 cut(s)	36, 403, 500, 533
ArsI	GACNNNNNNTTYG	4 cut(s)	50, 82, 108, 140
Asp700I	GAANNNNTTC	2 cut(s)	552, 825
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	621
AsuII	TTCGAA	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	357
BbvI	GCAGC	8 cut(s)	172, 175, 221, 248, 262, 324, 460, 780
BccI	CCATC	4 cut(s)	49, 84, 175, 299
BceAI	ACGGC	2 cut(s)	107, 124
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	207, 318
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	8 cut(s)	186, 189, 210, 237, 276, 338, 449, 794
BlsI	GCNGC	8 cut(s)	187, 190, 211, 238, 277, 339, 450, 795
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	4 cut(s)	147, 334, 693, 859
Bpu14I	TTCGAA	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 674
Bse1I	ACTGG	1 cut(s)	828
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	76, 349
BseLI	CCNNNNNNNGG	2 cut(s)	514, 674
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	828
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	8 cut(s)	172, 175, 221, 248, 262, 324, 460, 780
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	5, 164, 507, 694
BshNI	GGYRCC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	514, 674
BsnI	GGCC	4 cut(s)	5, 164, 507, 694
Bsp119I	TTCGAA	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	196, 241
BspACI	CCGC	7 cut(s)	50, 102, 120, 151, 375, 649, 860
BspANI	GGCC	4 cut(s)	5, 164, 507, 694
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	828
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	196, 241
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	4 cut(s)	319, 472, 553, 805
Bst6I	CTCTTC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	456
BstC8I	GCNNGC	3 cut(s)	162, 427, 864
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	76, 349
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	199, 244
BstMBI	GATC	2 cut(s)	196, 241
BstMWI	GCNNNNNNNGC	8 cut(s)	170, 209, 281, 337, 366, 394, 595, 878
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	207, 318
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	8 cut(s)	172, 175, 221, 248, 262, 324, 460, 780
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	5, 164, 507, 694
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	76, 349
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	3 cut(s)	162, 427, 864
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	25, 701
CviAII	CATG	5 cut(s)	17, 426, 462, 590, 888
CviQI	GTAC	2 cut(s)	25, 701
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	198, 243
DpnII	GATC	2 cut(s)	196, 241
EaeI	YGGCCR	2 cut(s)	3, 505
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	3 cut(s)	65, 109, 638
Eco147I	AGGCCT	2 cut(s)	164, 694
Eco47I	GGWCC	1 cut(s)	621
Eco57I	CTGAAG	2 cut(s)	309, 456
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	631
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	5 cut(s)	20, 429, 465, 593, 891
FatI	CATG	5 cut(s)	16, 425, 461, 589, 887
FauI	CCCGC	1 cut(s)	867
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	8 cut(s)	186, 189, 210, 237, 276, 338, 449, 794
FokI	GGATG	2 cut(s)	63, 356
Fsp4HI	GCNGC	8 cut(s)	186, 189, 210, 237, 276, 338, 449, 794
FspBI	CTAG	1 cut(s)	654
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	8 cut(s)	186, 189, 210, 237, 276, 338, 449, 794
HaeIII	GGCC	4 cut(s)	5, 164, 507, 694
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	20, 429, 465, 593, 891
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	6 cut(s)	116, 140, 215, 458, 578, 832
HpaI	GTTAAC	1 cut(s)	475
Hpy166II	GTNNAC	3 cut(s)	25, 312, 475
Hpy188I	TCNGA	6 cut(s)	289, 573, 583, 809, 820, 831
Hpy188III	TCNNGA	2 cut(s)	80, 688
Hpy8I	GTNNAC	3 cut(s)	25, 312, 475
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	3 cut(s)	169, 598, 808
HpyCH4III	ACNGT	4 cut(s)	319, 472, 553, 805
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	8 cut(s)	160, 209, 278, 425, 429, 589, 684, 872
HpyF10VI	GCNNNNNNNGC	8 cut(s)	170, 209, 281, 337, 366, 394, 595, 878
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	5 cut(s)	20, 429, 465, 593, 891
HspAI	GCGC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	196, 241
LmnI	GCTCC	2 cut(s)	29, 886
Lsp1109I	GCAGC	8 cut(s)	172, 175, 221, 248, 262, 324, 460, 780
LweI	GCATC	4 cut(s)	147, 334, 693, 859
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	3 cut(s)	322, 481, 677
MalI	GATC	2 cut(s)	198, 243
MboI	GATC	2 cut(s)	196, 241
MboII	GAAGA	4 cut(s)	20, 149, 302, 449
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	6 cut(s)	36, 403, 500, 533, 599, 644
MluNI	TGGCCA	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	507
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	2 cut(s)	552, 825
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	212, 239
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	633
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	8 cut(s)	170, 209, 281, 337, 366, 394, 595, 878
NdeII	GATC	2 cut(s)	196, 241
NlaIII	CATG	5 cut(s)	20, 429, 465, 593, 891
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	481
NsbI	TGCGCA	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	429
NspV	TTCGAA	1 cut(s)	456
PaeI	GCATGC	1 cut(s)	429
PceI	AGGCCT	2 cut(s)	164, 694
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	552, 825
PfeI	GAWTC	6 cut(s)	116, 140, 215, 458, 578, 832
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	8 cut(s)	187, 190, 211, 238, 277, 339, 450, 795
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	212, 239
RsaI	GTAC	2 cut(s)	26, 702
RsaNI	GTAC	2 cut(s)	25, 701
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	8 cut(s)	186, 189, 210, 237, 276, 338, 449, 794
Sau3AI	GATC	2 cut(s)	196, 241
Sau96I	GGNCC	1 cut(s)	621
ScrFI	CCNGG	1 cut(s)	633
SfaNI	GCATC	4 cut(s)	147, 334, 693, 859
SfcI	CTRYAG	2 cut(s)	207, 318
SfuI	TTCGAA	1 cut(s)	456
SinI	GGWCC	1 cut(s)	621
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	6 cut(s)	36, 403, 500, 533, 599, 644
SseBI	AGGCCT	2 cut(s)	164, 694
SsiI	CCGC	7 cut(s)	50, 102, 120, 151, 375, 649, 860
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	2 cut(s)	164, 694
StyD4I	CCNGG	1 cut(s)	631
TaaI	ACNGT	4 cut(s)	319, 472, 553, 805
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	2 cut(s)	69, 456
TasI	AATT	6 cut(s)	36, 403, 500, 533, 599, 644
TfiI	GAWTC	6 cut(s)	116, 140, 215, 458, 578, 832
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	8 cut(s)	185, 188, 209, 236, 275, 337, 448, 793
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	416, 591
TspGWI	ACGGA	2 cut(s)	42, 657
TspRI	CASTG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	4 cut(s)	36, 403, 500, 533
XceI	RCATGY	1 cut(s)	429
XmnI	GAANNNNTTC	2 cut(s)	552, 825
XspI	CTAG	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.