Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037397.1

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1306

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggacgaagaggaacatgaggtgtacggagcagacatcccagacgagacagaaatggagggcgacttggactcccatcacgccgacgttgacatgtccaccgccgacgacgacgccgccgtcaaggagctggatgagatgaagaagcgcttgaaggagatggaggaggaagctgctgccctccgtgagatgcaggccaaggttgagaaggaaatgggtgctgcccaagaccctgccgctgcagctgtttctcaggcacacaaggaagaggctgatgcgcgttctatttttgttggcaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

100

Amino Acids

11.01

Weight (kDa)

4.2

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	102, 117, 237
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	26
AfeI	AGCGCT	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	3 cut(s)	130, 173, 245
AluI	AGCT	3 cut(s)	130, 173, 245
Alw26I	GTCTC	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	173, 176, 221, 239, 242
AspLEI	GCGC	2 cut(s)	150, 280
BbvI	GCAGC	5 cut(s)	160, 163, 208, 226, 254
BccI	CCATC	2 cut(s)	84, 154
BceAI	ACGGC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	7 cut(s)	117, 174, 177, 222, 237, 240, 243
BlsI	GCNGC	7 cut(s)	118, 175, 178, 223, 238, 241, 244
BmsI	GCATC	2 cut(s)	180, 265
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	36, 139
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	160, 163, 208, 226, 254
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	197
BspACI	CCGC	3 cut(s)	102, 117, 237
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	3, 261
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	36, 139
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 280
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	5 cut(s)	160, 163, 208, 226, 254
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	36, 139
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	2 cut(s)	150, 280
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	17, 94
CviJI	RGCY	5 cut(s)	130, 173, 197, 245, 272
CviKI_1	RGCY	5 cut(s)	130, 173, 197, 245, 272
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	252
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	3, 261
EarI	CTCTTC	2 cut(s)	3, 261
Eco130I	CCWWGG	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	20, 97
FaiI	YATR	2 cut(s)	18, 95
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	2 cut(s)	16, 93
Fnu4HI	GCNGC	7 cut(s)	117, 174, 177, 222, 237, 240, 243
FokI	GGATG	2 cut(s)	23, 146
Fsp4HI	GCNGC	7 cut(s)	117, 174, 177, 222, 237, 240, 243
GlaI	GCGC	2 cut(s)	149, 279
GluI	GCNGC	7 cut(s)	117, 174, 177, 222, 237, 240, 243
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	197
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	150, 280
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	20, 97
Hin6I	GCGC	2 cut(s)	148, 278
HinP1I	GCGC	2 cut(s)	148, 278
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	25, 91, 99
Hpy8I	GTNNAC	3 cut(s)	25, 91, 99
Hpy99I	CGWCG	4 cut(s)	89, 110, 113, 116
HpyAV	CCTTC	2 cut(s)	148, 202
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	193, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	20, 97
HspAI	GCGC	2 cut(s)	148, 278
LmnI	GCTCC	2 cut(s)	29, 127
LpnPI	CCDG	5 cut(s)	54, 116, 179, 239, 246
Lsp1109I	GCAGC	5 cut(s)	160, 163, 208, 226, 254
LweI	GCATC	2 cut(s)	180, 265
MaeII	ACGT	1 cut(s)	87
MboII	GAAGA	3 cut(s)	20, 154, 278
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	4, 13, 52, 157, 160, 191, 262
MspA1I	CMGCKG	2 cut(s)	239, 245
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	20, 97
NspI	RCATGY	1 cut(s)	97
PciI	ACATGT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PkrI	GCNGC	7 cut(s)	118, 175, 178, 223, 238, 241, 244
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SatI	GCNGC	7 cut(s)	117, 174, 177, 222, 237, 240, 243
SchI	GAGTC	1 cut(s)	65
SetI	ASST	6 cut(s)	24, 90, 132, 175, 204, 247
SfaNI	GCATC	2 cut(s)	180, 265
SfcI	CTRYAG	1 cut(s)	240
SsiI	CCGC	3 cut(s)	102, 117, 237
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	90
TauI	GCSGC	2 cut(s)	119, 239
TseI	GCWGC	5 cut(s)	173, 176, 221, 239, 242
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	2 cut(s)	42, 173
XceI	RCATGY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.