Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

24895321 .. 24900251

Gene Structure 4931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACGAAGAGGAACATGAGGTGTACGGAGCAGACATCCCAGACGAAACAGAAATGGAGGGCGACTTGGACTCCCATCACGCCGACGTTGACATGTCCACCGCCGACGACGACGCCGCCGTCAAGGAGCTGGATGAGATGAAGAAGCGCTTGAAGGAGATGGAGGAGGAAGCTGCTGCCCTCCGTGAGATGCAGGCCAAGGTTGAGAAGGAAATGGGTGCTGCCCAAGACCCTGCCGCTGCAGCTGTTTCTCAGGCACACAAAGAAGAGGCTGATGCGCGTTCTGTTTTCGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCCAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGAAGCCGTTCAAGAGGCTCTTGTTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTCCCTGGTATGAAGCAATTCCGCCCTAGACGCTTCAATCCTTATATGGGTTACCGCTTCAGGAGGCCATATGTACCCCCTTACTTCTACTCTCCTTATGGATATGGGAAGGTTCCCAGATTCAGAAGGCCAGCACGATACATGCCCTACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

222

Amino Acids

25.5

Weight (kDa)

5.05

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 164	1.8e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	102, 117, 237, 535, 568
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	386, 419
AcuI	CTGAAG	2 cut(s)	342, 556
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	26, 330, 588
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	400, 560
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	5 cut(s)	154, 428, 443, 490, 550
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	3 cut(s)	130, 173, 245
AluI	AGCT	3 cut(s)	130, 173, 245
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	4 cut(s)	195, 391, 578, 641
ApeKI	GCWGC	6 cut(s)	173, 176, 221, 239, 242, 334
ApoI	RAATTY	2 cut(s)	386, 419
Asp700I	GAANNNNTTC	2 cut(s)	438, 530
AspLEI	GCGC	2 cut(s)	150, 280
AspS9I	GGNCC	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	393
BbvI	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
BccI	CCATC	2 cut(s)	84, 154
BceAI	ACGGC	2 cut(s)	104, 422
BciT130I	CCWGG	1 cut(s)	519
BfaI	CTAG	2 cut(s)	540, 667
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
BlsI	GCNGC	8 cut(s)	118, 175, 178, 223, 238, 241, 244, 336
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	180, 265
BoxI	GACNNNNGTC	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	198, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 560
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	198, 517
BseGI	GGATG	2 cut(s)	36, 139
BseLI	CCNNNNNNNGG	2 cut(s)	400, 560
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	266, 459
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	4 cut(s)	197, 393, 580, 643
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	400, 560
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	4 cut(s)	197, 393, 580, 643
BspACI	CCGC	5 cut(s)	102, 117, 237, 535, 568
BspANI	GGCC	4 cut(s)	197, 393, 580, 643
BspCNI	CTCAG	2 cut(s)	265, 460
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	198, 517
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	3, 261
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	195, 313, 645
BstDEI	CTNAG	2 cut(s)	252, 468
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	36, 139
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	3 cut(s)	97, 315, 658
BstPAI	GACNNNNGTC	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
BstXI	CCANNNNNNTGG	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	197, 393, 580, 643
BtsCI	GGATG	2 cut(s)	36, 139
Cac8I	GCNNGC	3 cut(s)	195, 313, 645
CfoI	GCGC	2 cut(s)	150, 280
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	2 cut(s)	122, 552
Csp6I	GTAC	3 cut(s)	25, 329, 587
CviAII	CATG	6 cut(s)	17, 94, 312, 348, 476, 655
CviQI	GTAC	3 cut(s)	25, 329, 587
DdeI	CTNAG	2 cut(s)	252, 468
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	3, 261
EarI	CTCTTC	2 cut(s)	3, 261
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	507
Eco47III	AGCGCT	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	342, 556
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 435, 467
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	16, 93, 311, 347, 475, 654
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
FokI	GGATG	2 cut(s)	23, 146
Fsp4HI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
FspBI	CTAG	2 cut(s)	540, 667
GlaI	GCGC	2 cut(s)	149, 279
GluI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	4 cut(s)	197, 393, 580, 643
HgaI	GACGC	2 cut(s)	122, 552
HhaI	GCGC	2 cut(s)	150, 280
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
Hin6I	GCGC	2 cut(s)	148, 278
HinP1I	GCGC	2 cut(s)	148, 278
HincII	GTYRAC	2 cut(s)	91, 361
HindII	GTYRAC	2 cut(s)	91, 361
HinfI	GANTC	3 cut(s)	71, 464, 633
HpaI	GTTAAC	1 cut(s)	361
Hpy166II	GTNNAC	4 cut(s)	25, 91, 99, 361
Hpy188I	TCNGA	3 cut(s)	459, 469, 638
Hpy188III	TCNNGA	2 cut(s)	443, 574
Hpy8I	GTNNAC	4 cut(s)	25, 91, 99, 361
Hpy99I	CGWCG	4 cut(s)	89, 110, 113, 116
HpyAV	CCTTC	5 cut(s)	148, 202, 484, 616, 633
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	193, 242, 311, 315, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
HpyF3I	CTNAG	2 cut(s)	252, 468
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
HspAI	GCGC	2 cut(s)	148, 278
KspAI	GTTAAC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	29, 127
Lsp1109I	GCAGC	6 cut(s)	160, 163, 208, 226, 254, 346
LweI	GCATC	2 cut(s)	180, 265
MaeI	CTAG	2 cut(s)	540, 667
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	367, 563
MboII	GAAGA	4 cut(s)	20, 154, 278, 335
MfeI	CAATTG	1 cut(s)	485
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	386, 419, 485, 530
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	4, 13, 52, 157, 160, 191, 262, 439, 570
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	438, 530
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	239, 245
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	242, 481, 543
NdeI	CATATG	1 cut(s)	583
NlaIII	CATG	6 cut(s)	20, 97, 315, 351, 479, 658
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	3 cut(s)	97, 315, 658
PaeI	GCATGC	1 cut(s)	315
PciI	ACATGT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	2 cut(s)	438, 530
PfeI	GAWTC	2 cut(s)	464, 633
PkrI	GCNGC	8 cut(s)	118, 175, 178, 223, 238, 241, 244, 336
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	93
PshAI	GACNNNNGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	517
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	26, 330, 588
RsaNI	GTAC	3 cut(s)	25, 329, 587
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	8 cut(s)	117, 174, 177, 222, 237, 240, 243, 335
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	519
SetI	ASST	9 cut(s)	24, 90, 132, 175, 204, 247, 322, 495, 627
SfaNI	GCATC	2 cut(s)	180, 265
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	507
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	4 cut(s)	386, 419, 485, 530
SsiI	CCGC	5 cut(s)	102, 117, 237, 535, 568
SspMI	CTAG	2 cut(s)	540, 667
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	90
TasI	AATT	4 cut(s)	386, 419, 485, 530
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	2 cut(s)	119, 239
TfiI	GAWTC	2 cut(s)	464, 633
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	6 cut(s)	173, 176, 221, 239, 242, 334
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	155, 477, 539
TspGWI	ACGGA	2 cut(s)	42, 173
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	2 cut(s)	386, 419
XceI	RCATGY	3 cut(s)	97, 315, 658
XmnI	GAANNNNTTC	2 cut(s)	438, 530
XspI	CTAG	2 cut(s)	540, 667
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.