Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

24293971 .. 24297517

Gene Structure 3547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCCGAAGAAGAGCATGAGGTGTACGGAGCAGAAATTCCATACGAGGCGGAGATGGACGGCGACTTCGATCCCCGTCCCGACGACGATGACATCTCCACCGCCCACGGCAACGAATCCTCCGTCAAGGAGGAGGAAGCTTTGGCTCTCCGCGAGATGCAGGCCAATGGGGCGAAGGAGATGGCTGCTGCGCAAGATCCTGCTACTGCAGCTGATTCTCAGGCAAACAAGGAAGCGGCTGGTGAATGTTCTGTTTTCGTTGGCAATGCTGATTGTTACTCCCCAACGTCTCTGTGTATAGGTGCTGGAAATGAGAGGGCTGCAAATGCCTCTGAAGAGGAAAGGAAAGATGGGTTTACAACTGTAGCTGCAGGGCTTCTCTGCTGCTGGATGCTGTTGTTTGGTGCCTATGTAGTAAATGCGGTGAGGGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCGAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGAAGCTGTTCAAAAGGCTCTTGTTCTGAATGAATCTGAGTTGCATGGTCGGCGATTGAAGGTTTTGCCTAAAAGGACCAATGTTCCTGGATATAAGCAATTCCGCCCTAGACGTTTCAATCCGTATATGGGTTACTGCATCAGGAGGCCTTATGTACCTCCTTACTTCTATTTGCCCTATGGATATGGGAAGGTTCCCAGGTTCAGAAGGCCAGCACGATACATGCCATACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

256

Amino Acids

28.53

Weight (kDa)

5.12

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	1 cut(s)	153
AciI	CCGC	6 cut(s)	50, 102, 151, 236, 422, 634
AclWI	GGATC	2 cut(s)	65, 191
AcoI	YGGCCR	2 cut(s)	3, 520
AcsI	RAATTY	2 cut(s)	36, 515
AcuI	CTGAAG	2 cut(s)	354, 471
AfaI	GTAC	3 cut(s)	26, 459, 687
AfiI	CCNNNNNNNGG	2 cut(s)	529, 659
AgsI	TTSAA	3 cut(s)	542, 589, 649
AjnI	CCWGG	2 cut(s)	616, 728
AluBI	AGCT	4 cut(s)	140, 212, 368, 536
AluI	AGCT	4 cut(s)	140, 212, 368, 536
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	65, 191
AoxI	GGCC	5 cut(s)	3, 162, 520, 677, 740
ApeKI	GCWGC	7 cut(s)	185, 188, 209, 320, 368, 384, 463
ApoI	RAATTY	2 cut(s)	36, 515
ArsI	GACNNNNNNTTYG	4 cut(s)	50, 82, 108, 140
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	254, 436
AsuII	TTCGAA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	404
BbvI	GCAGC	7 cut(s)	172, 175, 221, 307, 355, 371, 475
BccI	CCATC	3 cut(s)	49, 175, 344
BceAI	ACGGC	2 cut(s)	76, 124
BciT130I	CCWGG	2 cut(s)	618, 730
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	639, 766
BfmI	CTRYAG	3 cut(s)	207, 363, 369
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	8 cut(s)	186, 189, 210, 237, 321, 369, 385, 464
BlsI	GCNGC	8 cut(s)	187, 190, 211, 238, 322, 370, 386, 465
Bme1390I	CCNGG	2 cut(s)	618, 730
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	2 cut(s)	406, 726
BmrFI	CCNGG	2 cut(s)	618, 730
BmsI	GCATC	3 cut(s)	147, 381, 678
Bpu14I	TTCGAA	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	106, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 659
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	618, 730
BseDI	CCNNGG	2 cut(s)	106, 728
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	529, 659
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	233, 558
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	7 cut(s)	172, 175, 221, 307, 355, 371, 475
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	5 cut(s)	5, 164, 522, 679, 742
BshNI	GGYRCC	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	529, 659
BsmAI	GTCTC	1 cut(s)	294
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	5 cut(s)	5, 164, 522, 679, 742
Bsp119I	TTCGAA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	70, 196
BspACI	CCGC	6 cut(s)	50, 102, 151, 236, 422, 634
BspANI	GGCC	5 cut(s)	5, 164, 522, 679, 742
BspCNI	CTCAG	2 cut(s)	232, 559
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	406, 726
BspMAI	CTGCAG	2 cut(s)	211, 373
BspPI	GGATC	2 cut(s)	65, 191
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	106, 728
BssMI	GATC	2 cut(s)	70, 196
Bst2UI	CCWGG	2 cut(s)	618, 730
Bst4CI	ACNGT	2 cut(s)	364, 487
Bst6I	CTCTTC	2 cut(s)	6, 330
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	162, 442, 744
BstDEI	CTNAG	2 cut(s)	219, 567
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	73, 199
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	2 cut(s)	70, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 209, 326, 580
BstNI	CCWGG	2 cut(s)	618, 730
BstNSI	RCATGY	2 cut(s)	444, 757
BstSCI	CCNGG	2 cut(s)	616, 728
BstSFI	CTRYAG	3 cut(s)	207, 363, 369
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	7 cut(s)	172, 175, 221, 307, 355, 371, 475
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	5 cut(s)	5, 164, 522, 679, 742
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	396
Cac8I	GCNNGC	3 cut(s)	162, 442, 744
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	3 cut(s)	25, 458, 686
CviAII	CATG	5 cut(s)	17, 441, 477, 575, 754
CviQI	GTAC	3 cut(s)	25, 458, 686
DdeI	CTNAG	2 cut(s)	219, 567
DpnI	GATC	2 cut(s)	72, 198
DpnII	GATC	2 cut(s)	70, 196
EaeI	YGGCCR	2 cut(s)	3, 520
Eam1104I	CTCTTC	2 cut(s)	6, 330
EarI	CTCTTC	2 cut(s)	6, 330
EciI	GGCGGA	2 cut(s)	65, 623
Eco147I	AGGCCT	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	354, 471
EcoRII	CCWGG	2 cut(s)	616, 728
EcoT22I	ATGCAT	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	5 cut(s)	20, 444, 480, 578, 757
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	5 cut(s)	16, 440, 476, 574, 753
Fnu4HI	GCNGC	8 cut(s)	186, 189, 210, 237, 321, 369, 385, 464
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	8 cut(s)	186, 189, 210, 237, 321, 369, 385, 464
FspBI	CTAG	2 cut(s)	639, 766
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	8 cut(s)	186, 189, 210, 237, 321, 369, 385, 464
HaeIII	GGCC	5 cut(s)	5, 164, 522, 679, 742
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	20, 444, 480, 578, 757
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	4 cut(s)	116, 215, 473, 563
HpaI	GTTAAC	1 cut(s)	490
HphI	GGTGA	2 cut(s)	254, 436
Hpy166II	GTNNAC	3 cut(s)	25, 357, 490
Hpy188I	TCNGA	4 cut(s)	334, 558, 568, 737
Hpy188III	TCNNGA	2 cut(s)	80, 673
Hpy8I	GTNNAC	3 cut(s)	25, 357, 490
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	4 cut(s)	169, 583, 715, 732
HpyCH4III	ACNGT	2 cut(s)	364, 487
HpyCH4IV	ACGT	2 cut(s)	287, 643
HpyCH4V	TGCA	8 cut(s)	160, 209, 323, 371, 440, 444, 574, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 209, 326, 580
HpyF3I	CTNAG	2 cut(s)	219, 567
HpySE526I	ACGT	2 cut(s)	287, 643
Hsp92II	CATG	5 cut(s)	20, 444, 480, 578, 757
HspAI	GCGC	1 cut(s)	191
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	70, 196
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	7 cut(s)	172, 175, 221, 307, 355, 371, 475
LweI	GCATC	3 cut(s)	147, 381, 678
MaeI	CTAG	2 cut(s)	639, 766
MaeII	ACGT	2 cut(s)	287, 643
MaeIII	GTNAC	3 cut(s)	275, 496, 662
MalI	GATC	2 cut(s)	72, 198
MboI	GATC	2 cut(s)	70, 196
MboII	GAAGA	4 cut(s)	20, 23, 347, 464
MflI	RGATCY	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	3 cut(s)	36, 515, 629
MluNI	TGGCCA	1 cut(s)	522
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	618, 730
MvaI	CCWGG	2 cut(s)	618, 730
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	170, 209, 326, 580
NdeII	GATC	2 cut(s)	70, 196
NlaIII	CATG	5 cut(s)	20, 444, 480, 578, 757
NlaIV	GGNNCC	2 cut(s)	406, 726
NmuCI	GTSAC	1 cut(s)	496
NsbI	TGCGCA	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	2 cut(s)	444, 757
NspV	TTCGAA	1 cut(s)	471
PaeI	GCATGC	1 cut(s)	444
PceI	AGGCCT	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 120
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	116, 215, 473, 563
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	8 cut(s)	187, 190, 211, 238, 322, 370, 386, 465
Psp6I	CCWGG	2 cut(s)	616, 728
PspGI	CCWGG	2 cut(s)	616, 728
PspN4I	GGNNCC	2 cut(s)	406, 726
PspPI	GGNCC	1 cut(s)	606
PstI	CTGCAG	2 cut(s)	211, 373
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	26, 459, 687
RsaNI	GTAC	3 cut(s)	25, 458, 686
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	8 cut(s)	186, 189, 210, 237, 321, 369, 385, 464
Sau3AI	GATC	2 cut(s)	70, 196
Sau96I	GGNCC	1 cut(s)	606
ScrFI	CCNGG	2 cut(s)	618, 730
SfaNI	GCATC	3 cut(s)	147, 381, 678
SfcI	CTRYAG	3 cut(s)	207, 363, 369
SfuI	TTCGAA	1 cut(s)	471
SinI	GGWCC	1 cut(s)	606
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	3 cut(s)	36, 515, 629
SseBI	AGGCCT	1 cut(s)	679
SsiI	CCGC	6 cut(s)	50, 102, 151, 236, 422, 634
SspMI	CTAG	2 cut(s)	639, 766
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	2 cut(s)	616, 728
TaaI	ACNGT	2 cut(s)	364, 487
TaiI	ACGT	2 cut(s)	290, 646
TaqI	TCGA	2 cut(s)	69, 471
TasI	AATT	3 cut(s)	36, 515, 629
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	4 cut(s)	116, 215, 473, 563
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	7 cut(s)	185, 188, 209, 320, 368, 384, 463
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	3 cut(s)	42, 112, 642
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	2 cut(s)	36, 515
XceI	RCATGY	2 cut(s)	444, 757
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	639, 766
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.