Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

11651566 .. 11660819

Gene Structure 9254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1034100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGGAAGAGGAGCATGAGGTGTACGGAGCAGAGATTCCAGACGAAGGAGAAATGGACGGCGACATGGATGCCCTCCATGCCGACGTCGACATGTCCACCGCCGACGACGACGCCGTAAAGGAGCTGGACGAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGCGAGATGCAGGCCAAGGTTGAAAAGGAAATGGGCGCTGTTCAAGATCCTGCAATTGCTGCTGCTTCTCAAGCAAACAAGGAAGAGGTGGACGCTCGATCTGTTTTTGTTGGCAATTTATTCATCAAGTTCTGTGTATATGAGCTGGACATGTTACACTGTAGTTTGAGGGTGGGGCATAGTATTGTGATGTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

127

Amino Acids

14.13

Weight (kDa)

4.27

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	102, 145
AclWI	GGATC	1 cut(s)	221
AcyI	GRCGYC	2 cut(s)	87, 114
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	47
AflIII	ACRYGT	2 cut(s)	93, 330
AgsI	TTSAA	3 cut(s)	151, 203, 224
AluBI	AGCT	3 cut(s)	127, 170, 325
AluI	AGCT	3 cut(s)	127, 170, 325
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	4 cut(s)	170, 173, 239, 242
AspLEI	GCGC	1 cut(s)	218
BbvI	GCAGC	4 cut(s)	157, 160, 226, 229
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	2 cut(s)	76, 101
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	4 cut(s)	171, 174, 240, 243
BlsI	GCNGC	4 cut(s)	172, 175, 241, 244
BmsI	GCATC	2 cut(s)	61, 177
BpuEI	CTTGAG	1 cut(s)	234
BsaHI	GRCGYC	2 cut(s)	87, 114
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	26, 176
BseXI	GCAGC	4 cut(s)	157, 160, 226, 229
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	226, 278
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	2 cut(s)	102, 145
BspANI	GGCC	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	226, 278
BssNI	GRCGYC	2 cut(s)	87, 114
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	3 cut(s)	3, 183, 258
BstACI	GRCGYC	2 cut(s)	87, 114
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	229, 281
BstMBI	GATC	2 cut(s)	226, 278
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 239, 251
BstNSI	RCATGY	2 cut(s)	97, 334
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	4 cut(s)	157, 160, 226, 229
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	337
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	2 cut(s)	122, 281
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	17, 67, 80, 94, 331
CviJI	RGCY	4 cut(s)	127, 170, 194, 325
CviKI_1	RGCY	4 cut(s)	127, 170, 194, 325
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	2 cut(s)	228, 280
DpnII	GATC	2 cut(s)	226, 278
Eam1104I	CTCTTC	3 cut(s)	3, 183, 258
EarI	CTCTTC	3 cut(s)	3, 183, 258
Eco130I	CCWWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	20, 70, 83, 97, 334
FaiI	YATR	9 cut(s)	18, 68, 81, 95, 319, 321, 332, 360, 375
FatI	CATG	5 cut(s)	16, 66, 79, 93, 330
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	171, 174, 240, 243
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	171, 174, 240, 243
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	171, 174, 240, 243
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	194
HgaI	GACGC	2 cut(s)	122, 281
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	2 cut(s)	87, 114
Hin1II	CATG	5 cut(s)	20, 70, 83, 97, 334
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	37
Hpy166II	GTNNAC	4 cut(s)	25, 91, 99, 271
Hpy188III	TCNNGA	3 cut(s)	41, 182, 224
Hpy8I	GTNNAC	4 cut(s)	25, 91, 99, 271
Hpy99I	CGWCG	5 cut(s)	89, 92, 110, 113, 116
HpyAV	CCTTC	2 cut(s)	41, 145
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	190, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 239, 251
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	87, 114
Hsp92II	CATG	5 cut(s)	20, 70, 83, 97, 334
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	226, 278
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	13, 29, 124
LpnPI	CCDG	5 cut(s)	54, 113, 176, 243, 311
Lsp1109I	GCAGC	4 cut(s)	157, 160, 226, 229
LweI	GCATC	2 cut(s)	61, 177
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	2 cut(s)	228, 280
MboI	GATC	2 cut(s)	226, 278
MboII	GAAGA	4 cut(s)	20, 151, 170, 275
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	3 cut(s)	234, 295, 376
MnlI	CCTC	7 cut(s)	4, 13, 86, 154, 157, 259, 342
MunI	CAATTG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	80, 239, 251
NdeII	GATC	2 cut(s)	226, 278
NlaIII	CATG	5 cut(s)	20, 70, 83, 97, 334
NruI	TCGCGA	1 cut(s)	183
NspI	RCATGY	2 cut(s)	97, 334
PciI	ACATGT	2 cut(s)	93, 330
PciSI	GCTCTTC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	172, 175, 241, 244
PscI	ACATGT	2 cut(s)	93, 330
PsuI	RGATCY	1 cut(s)	226
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	183
SatI	GCNGC	4 cut(s)	171, 174, 240, 243
Sau3AI	GATC	2 cut(s)	226, 278
SetI	ASST	7 cut(s)	24, 90, 129, 172, 201, 270, 327
SfaNI	GCATC	2 cut(s)	61, 177
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	234, 295, 376
SsiI	CCGC	2 cut(s)	102, 145
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	90, 277
TasI	AATT	3 cut(s)	234, 295, 376
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	4 cut(s)	170, 173, 239, 242
TspDTI	ATGAA	2 cut(s)	152, 292
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	344
XceI	RCATGY	2 cut(s)	97, 334
XmiI	GTMKAC	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.