Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

25534376 .. 25539305

Gene Structure 4930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG249300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGACGAAGAGGAACATGAGGTGTACGGAGCAGACATCCCAGACGAGACAGAAATGGAGGGCGACTTGGACTCCCATCACGCCGACGTTGACATGTCCACCGCCGACGACGACGCCGCCGTCAAGGAGATGGAGGAGGAAGCTGCTGCCCTCCGTGAGATGCAGGCCAAGGTTGAGAAGGAAATGGGTGCTGCCCAAGACCCTGCCGCTGCAGCTGTTTCTCAGGCACACAAGGAAGAGGCTGATGCGCGTTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTACAGCAGCATTTCCAATCATGTGGCACAGTTAACAGAGTGACTATACTGACAGATAAATTTGGCCAACCAAAGGGTTTTGCCTATGTGGAATTCCTTGAAACAGAAGCCGTTCAAGAGGCTCTTGTTCTGAATGAATCTGAGTTGCATGGTCGGCAATTGAAGGTTTTGCCTAAAAGGACCAATGTCCCTGGTATGAAGCAATTCCGCCCTAGACGCTTCAATCCTTATATGGGTTACCGCTTCAGGAGACCATATGTACCCCCTTACTTCTACTCTCCTTATGGATATGGGAAGGTTCCCAGATTCAGAAGGCCAGCACGATACATGCCCTACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

212

Amino Acids

24.23

Weight (kDa)

4.94

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	86 - 154	1.6e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	250
AciI	CCGC	5 cut(s)	102, 117, 207, 505, 538
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	356, 389
AcuI	CTGAAG	2 cut(s)	312, 526
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	26, 300, 558
AfiI	CCNNNNNNNGG	2 cut(s)	370, 530
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	398, 413, 460, 520
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	2 cut(s)	143, 215
AluI	AGCT	2 cut(s)	143, 215
Alw26I	GTCTC	2 cut(s)	41, 541
AoxI	GGCC	3 cut(s)	165, 361, 611
ApeKI	GCWGC	6 cut(s)	143, 146, 191, 209, 212, 304
ApoI	RAATTY	2 cut(s)	356, 389
Asp700I	GAANNNNTTC	2 cut(s)	408, 500
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	363
BbvI	GCAGC	6 cut(s)	130, 133, 178, 196, 224, 316
BccI	CCATC	2 cut(s)	84, 124
BceAI	ACGGC	2 cut(s)	104, 392
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	41, 541
BfaI	CTAG	2 cut(s)	510, 637
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	8 cut(s)	117, 144, 147, 192, 207, 210, 213, 305
BlsI	GCNGC	8 cut(s)	118, 145, 148, 193, 208, 211, 214, 306
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	150, 235
BoxI	GACNNNNGTC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	168, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 530
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	168, 487
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	370, 530
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	236, 429
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	6 cut(s)	130, 133, 178, 196, 224, 316
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	167, 363, 613
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	370, 530
BsmAI	GTCTC	2 cut(s)	41, 541
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	167, 363, 613
Bso31I	GGTCTC	1 cut(s)	541
BspACI	CCGC	5 cut(s)	102, 117, 207, 505, 538
BspANI	GGCC	3 cut(s)	167, 363, 613
BspCNI	CTCAG	2 cut(s)	235, 430
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	168, 487
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	3, 231
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	165, 283, 615
BstDEI	CTNAG	2 cut(s)	222, 438
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	41, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 451, 513
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	3 cut(s)	97, 285, 628
BstPAI	GACNNNNGTC	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	6 cut(s)	130, 133, 178, 196, 224, 316
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	167, 363, 613
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	165, 283, 615
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	2 cut(s)	122, 522
Csp6I	GTAC	3 cut(s)	25, 299, 557
CviAII	CATG	6 cut(s)	17, 94, 282, 318, 446, 625
CviJI	RGCY	8 cut(s)	143, 167, 215, 242, 363, 407, 419, 613
CviKI_1	RGCY	8 cut(s)	143, 167, 215, 242, 363, 407, 419, 613
CviQI	GTAC	3 cut(s)	25, 299, 557
DdeI	CTNAG	2 cut(s)	222, 438
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	3, 231
EarI	CTCTTC	2 cut(s)	3, 231
EciI	GGCGGA	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	312, 526
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	6 cut(s)	20, 97, 285, 321, 449, 628
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	6 cut(s)	16, 93, 281, 317, 445, 624
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	8 cut(s)	117, 144, 147, 192, 207, 210, 213, 305
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	8 cut(s)	117, 144, 147, 192, 207, 210, 213, 305
FspBI	CTAG	2 cut(s)	510, 637
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	8 cut(s)	117, 144, 147, 192, 207, 210, 213, 305
HaeIII	GGCC	3 cut(s)	167, 363, 613
HgaI	GACGC	2 cut(s)	122, 522
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	20, 97, 285, 321, 449, 628
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	91, 331
HindII	GTYRAC	2 cut(s)	91, 331
HinfI	GANTC	3 cut(s)	71, 434, 603
HpaI	GTTAAC	1 cut(s)	331
Hpy166II	GTNNAC	4 cut(s)	25, 91, 99, 331
Hpy188I	TCNGA	3 cut(s)	429, 439, 608
Hpy188III	TCNNGA	2 cut(s)	413, 544
Hpy8I	GTNNAC	4 cut(s)	25, 91, 99, 331
Hpy99I	CGWCG	4 cut(s)	89, 110, 113, 116
HpyAV	CCTTC	4 cut(s)	172, 454, 586, 603
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	163, 212, 281, 285, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 451, 513
HpyF3I	CTNAG	2 cut(s)	222, 438
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	20, 97, 285, 321, 449, 628
HspAI	GCGC	1 cut(s)	248
KspAI	GTTAAC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	6 cut(s)	130, 133, 178, 196, 224, 316
LweI	GCATC	2 cut(s)	150, 235
MaeI	CTAG	2 cut(s)	510, 637
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	337, 533
MboII	GAAGA	3 cut(s)	20, 248, 305
MfeI	CAATTG	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	4 cut(s)	356, 389, 455, 500
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	4, 13, 52, 127, 130, 161, 232, 409
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	2 cut(s)	408, 500
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	209, 215
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	212, 451, 513
NdeI	CATATG	1 cut(s)	553
NlaIII	CATG	6 cut(s)	20, 97, 285, 321, 449, 628
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	3 cut(s)	97, 285, 628
PaeI	GCATGC	1 cut(s)	285
PciI	ACATGT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	2 cut(s)	408, 500
PfeI	GAWTC	2 cut(s)	434, 603
PkrI	GCNGC	8 cut(s)	118, 145, 148, 193, 208, 211, 214, 306
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	93
PshAI	GACNNNNGTC	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	487
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	26, 300, 558
RsaNI	GTAC	3 cut(s)	25, 299, 557
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	8 cut(s)	117, 144, 147, 192, 207, 210, 213, 305
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	489
SetI	ASST	8 cut(s)	24, 90, 145, 174, 217, 292, 465, 597
SfaNI	GCATC	2 cut(s)	150, 235
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	477
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	4 cut(s)	356, 389, 455, 500
SsiI	CCGC	5 cut(s)	102, 117, 207, 505, 538
SspMI	CTAG	2 cut(s)	510, 637
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	90
TasI	AATT	4 cut(s)	356, 389, 455, 500
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	2 cut(s)	119, 209
TfiI	GAWTC	2 cut(s)	434, 603
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	6 cut(s)	143, 146, 191, 209, 212, 304
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	447, 509
TspGWI	ACGGA	2 cut(s)	42, 143
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	356, 389
XceI	RCATGY	3 cut(s)	97, 285, 628
XmnI	GAANNNNTTC	2 cut(s)	408, 500
XspI	CTAG	2 cut(s)	510, 637
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.