AT5G11170

Helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
3553096 .. 3557018
3923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11170.2

Sequence Viewer

Length: 1284 bp
ATGGGAGACGCTAGAGACAACGAAGCCTACGAGGAGGAGCTCTTGGACTATGAAGAAGAAGACGAGAAGGTCCCAGATTCTGGAAACAAAGTTAACGGTGAAGCCGTGAAAAAAGGGTACGTGGGAATACACAGTTCTGGATTCAGAGACTTCCTTTTAAAACCGGAGCTTCTCAGAGCTATTGTTGACTCTGGATTTGAACATCCATCTGAAGTGCAACATGAATGTATCCCTCAAGCTATCTTGGGCATGGATGTCATCTGCCAAGCAAAGTCTGGTATGGGGAAGACTGCTGTGTTTGTCCTGTCTACTCTACAACAGATTGAACCATCTCCTGGCCAGGTTTCTGCACTTGTCTTGTGCCATACAAGAGAGCTAGCTTACCAGATCTGCAATGAGTTTGTGCGATTCAGTACCTATCTGCCTGATACAAAGGTTTCGGTGTTCTATGGTGGAGTCAACATTAAAATTCACAAAGACTTGCTGAAGAATGAATGTCCTCACATTGTTGTTGGTACCCCTGGTCGGGTGCTTGCACTTGCCAGGGAGAAAGATCTCTCTTTGAAGAATGTGAGGCATTTTATTCTTGATGAATGTGATAAAATGCTCGAGTCACTTGACATGCGAAGGGATGTGCAGGAGATTTTCAAGATGACTCCTCATGACAAACAAGTAATGATGTTCTCAGCAACGCTCAGCAAAGAGATACGCCCAGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATATATGTCGATGATGAAGCCAAGTTGACTCTTCATGGGCTTGTCCAGCACTATATCAAACTGAGCGAGATGGAGAAAAACCGGAAGTTGAATGACCTTCTTGATGCGTTGGACTTCAATCAAGTTGTCATTTTTGTGAAGAGCGTGAGCAGGGCTGCTGAGCTGAACAAGTTACTGGTGGAATGCAATTTCCCCTCAATATGCATCCACTCTGGAATGTCTCAAGAAGAGAGGTTGACTCGATACAAAAGTTTCAAGGAAGGGCACAAAAGGATCCTTGTGGCGACTGACTTGGTAGGAAGAGGGATTGACATTGAGCGTGTCAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACCTATCTTCACAGGGTTGGCAGAGCTGGTAGATTTGGAACCAAGGGTCTTGCAATCACATTTGTTGCATCTGCTTCAGATTCAGAGGTTCTTAACCAGGTACAAGAGAGGTTTGAGGTTGATATAAAGGAACTTCCGGAGCAGATTGATACTTCAACCTACATGCCTTCTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

48.34

Weight (kDa)

5.42

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 2 - 153 1.1e-36 DEAD/DEAH box helicase
ResIII PF04851 5 - 150 4.1e-08 Type III restriction enzyme, res subunit
Helicase_C PF00271 192 - 300 4.2e-30 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
Acc65I GGTACC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 515
AccB7I CCANNNNNTGG 2 cut(s) 80, 335
AccI GTMKAC 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 1246
AclWI GGATC 3 cut(s) 731, 1015, 1028
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 2 cut(s) 468, 725
AcuI CTGAAG 3 cut(s) 231, 506, 1170
AfaI GTAC 4 cut(s) 119, 415, 517, 1212
AfiI CCNNNNNNNGG 4 cut(s) 80, 335, 525, 526
AgsI TTSAA 8 cut(s) 200, 326, 565, 649, 838, 865, 1003, 1266
AjnI CCWGG 5 cut(s) 334, 339, 520, 542, 1206
AluBI AGCT 8 cut(s) 40, 169, 179, 239, 376, 380, 910, 1136
AluI AGCT 8 cut(s) 40, 169, 179, 239, 376, 380, 910, 1136
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 9, 141, 972
AlwI GGATC 3 cut(s) 731, 1015, 1028
AlwNI CAGNNNCTG 2 cut(s) 80, 1103
Ama87I CYCGRG 1 cut(s) 608
Aor13HI TCCGGA 1 cut(s) 1246
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 902
ApoI RAATTY 2 cut(s) 468, 725
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp718I GGTACC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 110
AsuNHI GCTAGC 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 1014
BaeI ACNNNNGTAYC 4 cut(s) 420, 453, 982, 1015
BalI TGGCCA 1 cut(s) 339
BamHI GGATCC 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 42
BbsI GAAGAC 2 cut(s) 66, 293
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 889
BccI CCATC 3 cut(s) 214, 337, 811
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 5 cut(s) 336, 341, 522, 544, 1208
BciVI GTATCC 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 9, 141, 972
BfaI CTAG 2 cut(s) 12, 377
BfuI GTATCC 1 cut(s) 239
BglII AGATCT 2 cut(s) 387, 553
BisI GCNGC 1 cut(s) 903
BlpI GCTNAGC 2 cut(s) 695, 906
BlsI GCNGC 1 cut(s) 904
Bme1390I CCNGG 5 cut(s) 336, 341, 522, 544, 1208
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 4 cut(s) 72, 517, 1022, 1150
BmrFI CCNGG 5 cut(s) 336, 341, 522, 544, 1208
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 3 cut(s) 841, 960, 1187
BmtI GCTAGC 1 cut(s) 380
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 2 cut(s) 66, 293
BplI GAGNNNNNCTC 2 cut(s) 970, 1002
Bpu1102I GCTNAGC 2 cut(s) 695, 906
BpuEI CTTGAG 2 cut(s) 219, 954
BsaAI YACGTR 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 1113
BsaJI CCNNGG 3 cut(s) 520, 543, 1152
BsaWI WCCGGW 3 cut(s) 163, 828, 1246
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 335, 525, 526
Bse1I ACTGG 2 cut(s) 713, 927
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 1113
BseAI TCCGGA 1 cut(s) 1246
BseBI CCWGG 5 cut(s) 336, 341, 522, 544, 1208
BseDI CCNNGG 3 cut(s) 520, 543, 1152
BseGI GGATG 4 cut(s) 202, 259, 637, 951
BseJI GATNNNNATC 1 cut(s) 1113
BseLI CCNNNNNNNGG 4 cut(s) 80, 335, 525, 526
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 5 cut(s) 187, 699, 709, 800, 897
BseNI ACTGG 2 cut(s) 713, 927
BseRI GAGGAG 3 cut(s) 47, 50, 648
BseSI GKGCMC 1 cut(s) 1014
BseXI GCAGC 1 cut(s) 889
BsgI GTGCAG 2 cut(s) 333, 656
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 3 cut(s) 164, 829, 1247
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 4 cut(s) 80, 335, 525, 526
BsmAI GTCTC 3 cut(s) 9, 141, 972
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 42, 1014
Bsp13I TCCGGA 1 cut(s) 1246
Bsp143I GATC 4 cut(s) 387, 553, 736, 1020
Bsp1720I GCTNAGC 2 cut(s) 695, 906
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 5 cut(s) 186, 698, 708, 801, 898
BspEI TCCGGA 1 cut(s) 1246
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 4 cut(s) 72, 517, 1022, 1150
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 731, 1015, 1028
BspQI GCTCTTC 1 cut(s) 881
BspT107I GGYRCC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 2 cut(s) 713, 927
BssECI CCNNGG 3 cut(s) 520, 543, 1152
BssMI GATC 4 cut(s) 387, 553, 736, 1020
BssT1I CCWWGG 1 cut(s) 1152
Bst2UI CCWGG 5 cut(s) 336, 341, 522, 544, 1208
Bst4CI ACNGT 2 cut(s) 98, 134
Bst6I CTCTTC 4 cut(s) 783, 881, 969, 1042
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 378, 534
BstDEI CTNAG 5 cut(s) 173, 685, 695, 809, 906
BstF5I GGATG 4 cut(s) 202, 259, 637, 951
BstKTI GATC 4 cut(s) 390, 556, 739, 1023
BstMAI GTCTC 3 cut(s) 9, 141, 972
BstMBI GATC 4 cut(s) 387, 553, 736, 1020
BstMWI GCNNNNNNNGC 2 cut(s) 717, 793
BstNI CCWGG 5 cut(s) 336, 341, 522, 544, 1208
BstNSI RCATGY 3 cut(s) 625, 1096, 1276
BstSCI CCNGG 5 cut(s) 334, 339, 520, 542, 1206
BstSLI GKGCMC 1 cut(s) 1014
BstV1I GCAGC 1 cut(s) 889
BstV2I GAAGAC 2 cut(s) 66, 293
BstX2I RGATCY 4 cut(s) 387, 553, 736, 1020
BstYI RGATCY 4 cut(s) 387, 553, 736, 1020
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 4 cut(s) 202, 259, 637, 951
Cac8I GCNNGC 2 cut(s) 378, 534
CaiI CAGNNNCTG 2 cut(s) 80, 1103
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 1206
Csp6I GTAC 4 cut(s) 118, 414, 516, 1211
CviAII CATG 7 cut(s) 221, 250, 622, 662, 782, 1093, 1273
CviQI GTAC 4 cut(s) 118, 414, 516, 1211
DdeI CTNAG 5 cut(s) 173, 685, 695, 809, 906
DpnI GATC 4 cut(s) 389, 555, 738, 1022
DpnII GATC 4 cut(s) 387, 553, 736, 1020
DraI TTTAAA 1 cut(s) 159
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 4 cut(s) 783, 881, 969, 1042
EarI CTCTTC 4 cut(s) 783, 881, 969, 1042
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 1152
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 3 cut(s) 231, 506, 1170
Eco88I CYCGRG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 5 cut(s) 334, 339, 520, 542, 1206
EcoT14I CCWWGG 1 cut(s) 1152
EcoT22I ATGCAT 1 cut(s) 953
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 1152
FaeI CATG 7 cut(s) 224, 253, 625, 665, 785, 1096, 1276
FaqI GGGAC 1 cut(s) 56
FatI CATG 7 cut(s) 220, 249, 621, 661, 781, 1092, 1272
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 1 cut(s) 903
FokI GGATG 4 cut(s) 189, 266, 644, 938
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 903
FspBI CTAG 2 cut(s) 12, 377
GluI GCNGC 1 cut(s) 903
HaeIII GGCC 1 cut(s) 339
HapII CCGG 3 cut(s) 164, 829, 1247
HgaI GACGC 1 cut(s) 17
Hin1II CATG 7 cut(s) 224, 253, 625, 665, 785, 1096, 1276
HincII GTYRAC 6 cut(s) 94, 187, 460, 774, 984, 1072
HindII GTYRAC 6 cut(s) 94, 187, 460, 774, 984, 1072
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 3 cut(s) 164, 829, 1247
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 7 cut(s) 94, 187, 309, 460, 774, 984, 1072
Hpy188I TCNGA 5 cut(s) 146, 176, 211, 1189, 1195
Hpy8I GTNNAC 7 cut(s) 94, 187, 309, 460, 774, 984, 1072
HpyAV CCTTC 4 cut(s) 61, 621, 854, 1001
HpyCH4III ACNGT 2 cut(s) 98, 134
HpyCH4IV ACGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 717, 793
HpyF3I CTNAG 5 cut(s) 173, 685, 695, 809, 906
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 7 cut(s) 224, 253, 625, 665, 785, 1096, 1276
Kpn2I TCCGGA 1 cut(s) 1246
KpnI GGTACC 1 cut(s) 519
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 387, 553, 736, 1020
LguI GCTCTTC 1 cut(s) 881
LmnI GCTCC 3 cut(s) 37, 166, 1249
Lsp1109I GCAGC 1 cut(s) 889
LweI GCATC 3 cut(s) 841, 960, 1187
MabI ACCWGGT 1 cut(s) 1206
MaeI CTAG 2 cut(s) 12, 377
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 612, 918
MalI GATC 4 cut(s) 389, 555, 738, 1022
MboI GATC 4 cut(s) 387, 553, 736, 1020
MflI RGATCY 4 cut(s) 387, 553, 736, 1020
MhlI GDGCHC 2 cut(s) 42, 1014
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 3 cut(s) 468, 725, 934
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 6 cut(s) 182, 465, 620, 649, 769, 979
MmeI TCCRAC 1 cut(s) 837
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 953
MroI TCCGGA 1 cut(s) 1246
MscI TGGCCA 1 cut(s) 339
MseI TTAA 5 cut(s) 93, 158, 465, 1203, 1282
MslI CAYNNNNRTG 1 cut(s) 881
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 3 cut(s) 164, 829, 1247
MspR9I CCNGG 5 cut(s) 336, 341, 522, 544, 1208
Mva1269I GAATGC 1 cut(s) 935
MvaI CCWGG 5 cut(s) 336, 341, 522, 544, 1208
MwoI GCNNNNNNNGC 2 cut(s) 717, 793
NdeII GATC 4 cut(s) 387, 553, 736, 1020
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 7 cut(s) 224, 253, 625, 665, 785, 1096, 1276
NlaIV GGNNCC 4 cut(s) 72, 517, 1022, 1150
NmuCI GTSAC 1 cut(s) 612
NsiI ATGCAT 1 cut(s) 953
NspI RCATGY 3 cut(s) 625, 1096, 1276
PaeR7I CTCGAG 1 cut(s) 608
PagI TCATGA 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 881
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 102
PctI GAATGC 1 cut(s) 935
PfeI GAWTC 5 cut(s) 77, 141, 408, 1100, 1190
PflMI CCANNNNNTGG 2 cut(s) 80, 335
PkrI GCNGC 1 cut(s) 904
PleI GAGTC 6 cut(s) 182, 464, 619, 649, 769, 979
PpsI GAGTC 6 cut(s) 182, 464, 619, 649, 769, 979
Ppu21I YACGTR 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 5 cut(s) 334, 339, 520, 542, 1206
PspGI CCWGG 5 cut(s) 334, 339, 520, 542, 1206
PspN4I GGNNCC 4 cut(s) 72, 517, 1022, 1150
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PspXI VCTCGAGB 1 cut(s) 608
PstNI CAGNNNCTG 2 cut(s) 80, 1103
PsuI RGATCY 4 cut(s) 387, 553, 736, 1020
RsaI GTAC 4 cut(s) 119, 415, 517, 1212
RsaNI GTAC 4 cut(s) 118, 414, 516, 1211
RseI CAYNNNNRTG 1 cut(s) 881
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 881
SaqAI TTAA 5 cut(s) 93, 158, 465, 1203, 1282
SatI GCNGC 1 cut(s) 903
Sau3AI GATC 4 cut(s) 387, 553, 736, 1020
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 6 cut(s) 182, 465, 620, 649, 769, 979
ScrFI CCNGG 5 cut(s) 336, 341, 522, 544, 1208
SduI GDGCHC 2 cut(s) 42, 1014
SexAI ACCWGGT 1 cut(s) 1206
SfaNI GCATC 3 cut(s) 841, 960, 1187
Sfr274I CTCGAG 1 cut(s) 608
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 881
SmlI CTYRAG 3 cut(s) 234, 608, 969
SmoI CTYRAG 3 cut(s) 234, 608, 969
Sse9I AATT 3 cut(s) 468, 725, 934
SspMI CTAG 2 cut(s) 12, 377
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 5 cut(s) 334, 339, 520, 542, 1206
StyI CCWWGG 1 cut(s) 1152
TaaI ACNGT 2 cut(s) 98, 134
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 609, 756, 988
TasI AATT 3 cut(s) 468, 725, 934
TfiI GAWTC 5 cut(s) 77, 141, 408, 1100, 1190
Tru1I TTAA 5 cut(s) 93, 158, 465, 1203, 1282
Tru9I TTAA 5 cut(s) 93, 158, 465, 1203, 1282
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 1 cut(s) 902
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 6 cut(s) 66, 237, 507, 606, 770, 777
Van91I CCANNNNNTGG 2 cut(s) 80, 335
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 468, 725
XceI RCATGY 3 cut(s) 625, 1096, 1276
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 2 cut(s) 12, 377
Zsp2I ATGCAT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.